RNA–Protein interactions for RNA: ENST00000563759.1

LINC01960-201, Transcript of long intergenic non-protein coding RNA 1960, humanhuman

BASIC

Gene LINC01960, Length 1,884 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01960-201ENST00000563759 TSR2Q969E8 191 aaKnown RBP28.53■■■□□ 2.16
LINC01960-201ENST00000563759 STRN4Q9NRL3 753 aa28.53■■■□□ 2.16
LINC01960-201ENST00000563759 PLEKHO1Q53GL0 409 aaPredicted RBP28.53■■■□□ 2.16
LINC01960-201ENST00000563759 LAS1LQ9Y4W2 734 aaKnown RBP28.53■■■□□ 2.16
LINC01960-201ENST00000563759 GNAT3A8MTJ3 354 aa28.52■■■□□ 2.16
LINC01960-201ENST00000563759 EVA1CP58658 441 aa28.52■■■□□ 2.16
LINC01960-201ENST00000563759 AMOTQ4VCS5 1084 aa28.52■■■□□ 2.16
LINC01960-201ENST00000563759 PKD1L3Q7Z443 1732 aa28.51■■■□□ 2.16
LINC01960-201ENST00000563759 BTG4Q9NY30 223 aa28.51■■■□□ 2.15
LINC01960-201ENST00000563759 MEGF6O75095 1541 aa28.51■■■□□ 2.15
LINC01960-201ENST00000563759 JCADQ9P266 1359 aa28.51■■■□□ 2.15
LINC01960-201ENST00000563759 IFT57Q9NWB7 429 aa28.51■■■□□ 2.15
LINC01960-201ENST00000563759 GNAI1P63096 354 aa28.5■■■□□ 2.15
LINC01960-201ENST00000563759 NUTM2BA6NNL0 878 aaPredicted RBP28.49■■■□□ 2.15
LINC01960-201ENST00000563759 NUTM2EB1AL46 878 aaPredicted RBP28.49■■■□□ 2.15
LINC01960-201ENST00000563759 HTATSF1O43719 755 aaKnown RBP28.49■■■□□ 2.15
LINC01960-201ENST00000563759 ADAMTS2O95450 1211 aa28.49■■■□□ 2.15
LINC01960-201ENST00000563759 TATP17735 454 aaPredicted RBP28.49■■■□□ 2.15
LINC01960-201ENST00000563759 NUTM2AQ8IVF1 878 aaPredicted RBP28.49■■■□□ 2.15
LINC01960-201ENST00000563759 ZNF530Q6P9A1 599 aaPredicted RBP28.49■■■□□ 2.15
LINC01960-201ENST00000563759 PLEKHG2Q9H7P9 1386 aa28.48■■■□□ 2.15
LINC01960-201ENST00000563759 FKBP8Q14318 412 aa28.47■■■□□ 2.15
LINC01960-201ENST00000563759 CRB1P82279 1406 aa28.47■■■□□ 2.15
LINC01960-201ENST00000563759 NRAPQ86VF7 1730 aa28.47■■■□□ 2.15
LINC01960-201ENST00000563759 NWD2Q9ULI1 1742 aa28.47■■■□□ 2.15
LINC01960-201ENST00000563759 LARP1Q6PKG0 1096 aaKnown RBP28.46■■■□□ 2.15
LINC01960-201ENST00000563759 CFAP44Q96MT7 982 aa28.46■■■□□ 2.15
LINC01960-201ENST00000563759 RNF123Q5XPI4 1314 aa28.46■■■□□ 2.15
LINC01960-201ENST00000563759 C1orf141Q5JVX7 400 aa28.45■■■□□ 2.15
LINC01960-201ENST00000563759 CARD10Q9BWT7 1032 aa28.45■■■□□ 2.15
LINC01960-201ENST00000563759 ZNF853P0CG23 659 aa28.44■■■□□ 2.14
LINC01960-201ENST00000563759 AKAP4Q5JQC9 854 aa28.44■■■□□ 2.14
LINC01960-201ENST00000563759 RRP1P56182 461 aaKnown RBP28.43■■■□□ 2.14
LINC01960-201ENST00000563759 IRX6P78412 446 aaPredicted RBP28.43■■■□□ 2.14
LINC01960-201ENST00000563759 MBIPQ9NS73 344 aa28.43■■■□□ 2.14
LINC01960-201ENST00000563759 EXOSC9Q06265 439 aaKnown RBP28.42■■■□□ 2.14
LINC01960-201ENST00000563759 OVOS2A0A0G2JMS6 1433 aa28.42■■■□□ 2.14
LINC01960-201ENST00000563759 SPG7Q9UQ90 795 aa28.42■■■□□ 2.14
LINC01960-201ENST00000563759 WNK3Q9BYP7 1800 aa28.41■■■□□ 2.14
LINC01960-201ENST00000563759 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.4■■■□□ 2.14
LINC01960-201ENST00000563759 SCN11AQ9UI33 1791 aa28.4■■■□□ 2.14
LINC01960-201ENST00000563759 CT47B1P0C2W7 299 aaPredicted RBP28.39■■■□□ 2.14
LINC01960-201ENST00000563759 IL17REQ8NFR9 667 aa28.38■■■□□ 2.13
LINC01960-201ENST00000563759 USP35Q9P2H5 1018 aa28.38■■■□□ 2.13
LINC01960-201ENST00000563759 ADAMTS7Q9UKP4 1686 aa28.38■■■□□ 2.13
LINC01960-201ENST00000563759 HSPA1LP34931 641 aa28.38■■■□□ 2.13
LINC01960-201ENST00000563759 CEMIPQ8WUJ3 1361 aa28.37■■■□□ 2.13
LINC01960-201ENST00000563759 SHANK3Q9BYB0 1731 aa28.37■■■□□ 2.13
LINC01960-201ENST00000563759 SPATA31A6Q5VVP1 1343 aa28.37■■■□□ 2.13
LINC01960-201ENST00000563759 IL2RBP14784 551 aa28.36■■■□□ 2.13
LINC01960-201ENST00000563759 CHL1O00533 1208 aa28.36■■■□□ 2.13
LINC01960-201ENST00000563759 SIPA1L3O60292 1781 aaPredicted RBP28.35■■■□□ 2.13
LINC01960-201ENST00000563759 MPRIPQ6WCQ1 1025 aa28.35■■■□□ 2.13
LINC01960-201ENST00000563759 TSPYL4Q9UJ04 414 aa28.34■■■□□ 2.13
LINC01960-201ENST00000563759 SLIT2O94813 1529 aa28.34■■■□□ 2.13
LINC01960-201ENST00000563759 KDM3BQ7LBC6 1761 aa28.33■■■□□ 2.13
LINC01960-201ENST00000563759 RARSP54136 660 aaKnown RBP28.33■■■□□ 2.13
LINC01960-201ENST00000563759 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.33■■■□□ 2.13
LINC01960-201ENST00000563759 BCAR3O75815 825 aa28.32■■■□□ 2.12
LINC01960-201ENST00000563759 IFNL2Q8IZJ0 200 aa28.32■■■□□ 2.12
LINC01960-201ENST00000563759 LGR6Q9HBX8 967 aa28.32■■■□□ 2.12
LINC01960-201ENST00000563759 LRP6O75581 1613 aa28.32■■■□□ 2.12
LINC01960-201ENST00000563759 PHKG2P15735 406 aa28.32■■■□□ 2.12
LINC01960-201ENST00000563759 TEFQ10587 303 aa28.32■■■□□ 2.12
LINC01960-201ENST00000563759 PLIN1O60240 522 aa28.31■■■□□ 2.12
LINC01960-201ENST00000563759 MIS18AQ9NYP9 233 aa28.31■■■□□ 2.12
LINC01960-201ENST00000563759 PCDH11XQ9BZA7 1347 aa28.31■■■□□ 2.12
LINC01960-201ENST00000563759 PCDH11YQ9BZA8 1340 aa28.31■■■□□ 2.12
LINC01960-201ENST00000563759 RNMTO43148 476 aaKnown RBP28.3■■■□□ 2.12
LINC01960-201ENST00000563759 TAF7Q15545 349 aaPredicted RBP28.3■■■□□ 2.12
LINC01960-201ENST00000563759 C8orf37Q96NL8 207 aa28.3■■■□□ 2.12
LINC01960-201ENST00000563759 ZCRB1Q8TBF4 217 aaKnown RBP28.29■■■□□ 2.12
LINC01960-201ENST00000563759 BCL2L13Q9BXK5 485 aa28.29■■■□□ 2.12
LINC01960-201ENST00000563759 CYP27B1O15528 508 aa28.28■■■□□ 2.12
LINC01960-201ENST00000563759 TWISTNBQ3B726 338 aaPredicted RBP28.28■■■□□ 2.12
LINC01960-201ENST00000563759 KDM6AO15550 1401 aaPredicted RBP28.28■■■□□ 2.12
LINC01960-201ENST00000563759 BABAM1Q9NWV8 329 aa28.27■■■□□ 2.12
LINC01960-201ENST00000563759 ELL2O00472 640 aaPredicted RBP28.27■■■□□ 2.12
LINC01960-201ENST00000563759 TSPYL6Q8N831 410 aa28.27■■■□□ 2.12
LINC01960-201ENST00000563759 NGLY1Q96IV0 654 aa28.27■■■□□ 2.12
LINC01960-201ENST00000563759 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.27■■■□□ 2.12
LINC01960-201ENST00000563759 DISP2A7MBM2 1401 aa28.26■■■□□ 2.11
LINC01960-201ENST00000563759 HSP90AB1P08238 724 aaKnown RBP28.26■■■□□ 2.11
LINC01960-201ENST00000563759 CANXP27824 592 aaKnown RBP28.26■■■□□ 2.11
LINC01960-201ENST00000563759 C8orf58Q8NAV2 365 aa28.26■■■□□ 2.11
LINC01960-201ENST00000563759 ZNF428Q96B54 188 aa28.26■■■□□ 2.11
LINC01960-201ENST00000563759 SMC4Q9NTJ3 1288 aa28.26■■■□□ 2.11
LINC01960-201ENST00000563759 DCAF5Q96JK2 942 aa28.24■■■□□ 2.11
LINC01960-201ENST00000563759 SPATA31A1Q5TZJ5 1347 aa28.23■■■□□ 2.11
LINC01960-201ENST00000563759 VAMP4O75379 141 aa28.23■■■□□ 2.11
LINC01960-201ENST00000563759 ERICH6BQ5W0A0 696 aa28.23■■■□□ 2.11
LINC01960-201ENST00000563759 KRT24Q2M2I5 525 aa28.23■■■□□ 2.11
LINC01960-201ENST00000563759 MEX3CQ5U5Q3 659 aaKnown RBP28.23■■■□□ 2.11
LINC01960-201ENST00000563759 SSH1Q8WYL5 1049 aa28.23■■■□□ 2.11
LINC01960-201ENST00000563759 FRAT1Q92837 279 aaPredicted RBP28.23■■■□□ 2.11
LINC01960-201ENST00000563759 CCDC9Q9Y3X0 531 aaKnown RBP28.23■■■□□ 2.11
LINC01960-201ENST00000563759 MRC1P22897 1456 aa28.23■■■□□ 2.11
LINC01960-201ENST00000563759 ALDH1L2Q3SY69 923 aa28.21■■■□□ 2.11
LINC01960-201ENST00000563759 UNC5CLQ8IV45 518 aa28.21■■■□□ 2.11
LINC01960-201ENST00000563759 BTBD11A6QL63 1104 aa28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms