RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 CYP2E1P05181 493 aaPredicted RBP17.16■□□□□ 0.34
VPS9D1-202ENST00000561976 CEP85Q6P2H3 762 aa17.16■□□□□ 0.34
VPS9D1-202ENST00000561976 KRT24Q2M2I5 525 aa17.16■□□□□ 0.34
VPS9D1-202ENST00000561976 REC8O95072 547 aa17.15■□□□□ 0.34
VPS9D1-202ENST00000561976 KNDC1Q76NI1 1749 aa17.15■□□□□ 0.34
VPS9D1-202ENST00000561976 VSIG10Q8N0Z9 540 aa17.15■□□□□ 0.34
VPS9D1-202ENST00000561976 HAP1P54257 671 aaPredicted RBP17.14■□□□□ 0.33
VPS9D1-202ENST00000561976 CDK12Q9NYV4 1490 aaPredicted RBP17.14■□□□□ 0.33
VPS9D1-202ENST00000561976 EDC4Q6P2E9 1401 aaKnown RBP17.14■□□□□ 0.33
VPS9D1-202ENST00000561976 RBSNQ9H1K0 784 aa17.14■□□□□ 0.33
VPS9D1-202ENST00000561976 PREX1Q8TCU6 1659 aa17.14■□□□□ 0.33
VPS9D1-202ENST00000561976 NEO1Q92859 1461 aa17.13■□□□□ 0.33
VPS9D1-202ENST00000561976 RBM27Q9P2N5 1060 aaKnown RBP17.13■□□□□ 0.33
VPS9D1-202ENST00000561976 YEATS2Q9ULM3 1422 aa17.13■□□□□ 0.33
VPS9D1-202ENST00000561976 ATP10DQ9P241 1426 aa17.13■□□□□ 0.33
VPS9D1-202ENST00000561976 PRIM1P49642 420 aaKnown RBP17.12■□□□□ 0.33
VPS9D1-202ENST00000561976 FOXD4L5Q5VV16 416 aaPredicted RBP17.12■□□□□ 0.33
VPS9D1-202ENST00000561976 FOXD4L4Q8WXT5 416 aaPredicted RBP17.12■□□□□ 0.33
VPS9D1-202ENST00000561976 MEIS3Q99687 375 aa17.12■□□□□ 0.33
VPS9D1-202ENST00000561976 MSH6P52701 1360 aa17.12■□□□□ 0.33
VPS9D1-202ENST00000561976 ERC2O15083 957 aa17.12■□□□□ 0.33
VPS9D1-202ENST00000561976 WASLO00401 505 aaPredicted RBP17.11■□□□□ 0.33
VPS9D1-202ENST00000561976 OFD1O75665 1012 aa17.11■□□□□ 0.33
VPS9D1-202ENST00000561976 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.11■□□□□ 0.33
VPS9D1-202ENST00000561976 DLG5Q8TDM6 1919 aa17.11■□□□□ 0.33
VPS9D1-202ENST00000561976 RTL1A6NKG5 1358 aa17.11■□□□□ 0.33
VPS9D1-202ENST00000561976 SULT6B1Q6IMI4 303 aa17.11■□□□□ 0.33
VPS9D1-202ENST00000561976 AATKQ6ZMQ8 1374 aa17.11■□□□□ 0.33
VPS9D1-202ENST00000561976 MCM10Q7L590 875 aa17.11■□□□□ 0.33
VPS9D1-202ENST00000561976 AEBP1Q8IUX7 1158 aa17.11■□□□□ 0.33
VPS9D1-202ENST00000561976 GPT2Q8TD30 523 aa17.11■□□□□ 0.33
VPS9D1-202ENST00000561976 NCKAP5LQ9HCH0 1330 aa17.1■□□□□ 0.33
VPS9D1-202ENST00000561976 ZDHHC9Q9Y397 364 aa17.1■□□□□ 0.33
VPS9D1-202ENST00000561976 HMMRO75330 724 aa17.1■□□□□ 0.33
VPS9D1-202ENST00000561976 CHAMP1Q96JM3 812 aa17.1■□□□□ 0.33
VPS9D1-202ENST00000561976 CPSF1Q10570 1443 aaKnown RBP17.09■□□□□ 0.33
VPS9D1-202ENST00000561976 NEK4P51957 841 aa17.09■□□□□ 0.33
VPS9D1-202ENST00000561976 NUDT16Q96DE0 195 aaKnown RBP17.09■□□□□ 0.33
VPS9D1-202ENST00000561976 PTPRCP08575 1304 aa17.08■□□□□ 0.33
VPS9D1-202ENST00000561976 SLC4A2P04920 1241 aa17.08■□□□□ 0.33
VPS9D1-202ENST00000561976 HS1BP3Q53T59 392 aa17.08■□□□□ 0.33
VPS9D1-202ENST00000561976 SLC4A10Q6U841 1118 aa17.08■□□□□ 0.33
VPS9D1-202ENST00000561976 CHL1O00533 1208 aa17.08■□□□□ 0.32
VPS9D1-202ENST00000561976 RGS12O14924 1447 aa17.08■□□□□ 0.32
VPS9D1-202ENST00000561976 SYCE3A1L190 88 aa17.07■□□□□ 0.32
VPS9D1-202ENST00000561976 R3HCC1Q9Y3T6 440 aaKnown RBP17.07■□□□□ 0.32
VPS9D1-202ENST00000561976 TXNDC2Q86VQ3 553 aa17.06■□□□□ 0.32
VPS9D1-202ENST00000561976 TMEM63CQ9P1W3 806 aa17.06■□□□□ 0.32
VPS9D1-202ENST00000561976 NOL7Q9UMY1 257 aaKnown RBP17.06■□□□□ 0.32
VPS9D1-202ENST00000561976 LRSAM1Q6UWE0 723 aa17.06■□□□□ 0.32
VPS9D1-202ENST00000561976 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.06■□□□□ 0.32
VPS9D1-202ENST00000561976 CCDC61Q9Y6R9 512 aa17.06■□□□□ 0.32
VPS9D1-202ENST00000561976 DLC1Q96QB1 1528 aa17.06■□□□□ 0.32
VPS9D1-202ENST00000561976 PDE1AP54750 535 aa17.06■□□□□ 0.32
VPS9D1-202ENST00000561976 EIF4A2Q14240 407 aaKnown RBP17.06■□□□□ 0.32
VPS9D1-202ENST00000561976 TMX3Q96JJ7 454 aa17.06■□□□□ 0.32
VPS9D1-202ENST00000561976 PDLIM2Q96JY6 352 aa17.06■□□□□ 0.32
VPS9D1-202ENST00000561976 XPCQ01831 940 aaPredicted RBP17.05■□□□□ 0.32
VPS9D1-202ENST00000561976 NOL8Q76FK4 1167 aaKnown RBP17.05■□□□□ 0.32
VPS9D1-202ENST00000561976 PDCL3Q9H2J4 239 aa17.05■□□□□ 0.32
VPS9D1-202ENST00000561976 NSFL1CQ9UNZ2 370 aaKnown RBP17.05■□□□□ 0.32
VPS9D1-202ENST00000561976 TSHZ3Q63HK5 1081 aa17.04■□□□□ 0.32
VPS9D1-202ENST00000561976 MIS18AQ9NYP9 233 aa17.04■□□□□ 0.32
VPS9D1-202ENST00000561976 CPS1P31327 1500 aa17.04■□□□□ 0.32
VPS9D1-202ENST00000561976 KIAA0232Q92628 1395 aa17.04■□□□□ 0.32
VPS9D1-202ENST00000561976 F6X3S4 739 aa17.04■□□□□ 0.32
VPS9D1-202ENST00000561976 RNF214Q8ND24 703 aa17.04■□□□□ 0.32
VPS9D1-202ENST00000561976 ZMYND15Q9H091 742 aa17.04■□□□□ 0.32
VPS9D1-202ENST00000561976 MBD3O95983 291 aa17.03■□□□□ 0.32
VPS9D1-202ENST00000561976 MCCP23508 829 aa17.03■□□□□ 0.32
VPS9D1-202ENST00000561976 EXOC6BQ9Y2D4 811 aa17.03■□□□□ 0.32
VPS9D1-202ENST00000561976 PLEKHG5O94827 1062 aa17.03■□□□□ 0.32
VPS9D1-202ENST00000561976 RBM10P98175 930 aaKnown RBP17.03■□□□□ 0.32
VPS9D1-202ENST00000561976 OSBPL3Q9H4L5 887 aa17.02■□□□□ 0.32
VPS9D1-202ENST00000561976 RICTORQ6R327 1708 aa17.02■□□□□ 0.32
VPS9D1-202ENST00000561976 ZNF500O60304 480 aaPredicted RBP17.02■□□□□ 0.31
VPS9D1-202ENST00000561976 MCM2P49736 904 aa17.02■□□□□ 0.31
VPS9D1-202ENST00000561976 G2E3Q7L622 706 aa17.01■□□□□ 0.31
VPS9D1-202ENST00000561976 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.01■□□□□ 0.31
VPS9D1-202ENST00000561976 ZKSCAN5Q9Y2L8 839 aa17.01■□□□□ 0.31
VPS9D1-202ENST00000561976 TRIM6-TRIM34B2RNG4 842 aa17.01■□□□□ 0.31
VPS9D1-202ENST00000561976 CCT4P50991 539 aaKnown RBP17.01■□□□□ 0.31
VPS9D1-202ENST00000561976 TERF1P54274 439 aa17.01■□□□□ 0.31
VPS9D1-202ENST00000561976 RILPL2Q969X0 211 aa17.01■□□□□ 0.31
VPS9D1-202ENST00000561976 ESYT1Q9BSJ8 1104 aa17.01■□□□□ 0.31
VPS9D1-202ENST00000561976 ANO2Q9NQ90 1003 aa17.01■□□□□ 0.31
VPS9D1-202ENST00000561976 SOX12O15370 315 aa17■□□□□ 0.31
VPS9D1-202ENST00000561976 CCDC39Q9UFE4 941 aa17■□□□□ 0.31
VPS9D1-202ENST00000561976 GNAI2P04899 355 aa17■□□□□ 0.31
VPS9D1-202ENST00000561976 FOXD4L6Q3SYB3 417 aaPredicted RBP17■□□□□ 0.31
VPS9D1-202ENST00000561976 FOXD4L3Q6VB84 417 aaPredicted RBP17■□□□□ 0.31
VPS9D1-202ENST00000561976 TSPYL4Q9UJ04 414 aa17■□□□□ 0.31
VPS9D1-202ENST00000561976 A2ML1A8K2U0 1454 aa16.99■□□□□ 0.31
VPS9D1-202ENST00000561976 BRD1O95696 1058 aa16.99■□□□□ 0.31
VPS9D1-202ENST00000561976 PTMAP06454 111 aaKnown RBP16.99■□□□□ 0.31
VPS9D1-202ENST00000561976 HSP90AB2PQ58FF8 381 aa16.99■□□□□ 0.31
VPS9D1-202ENST00000561976 RTF1Q92541 710 aaKnown RBP16.99■□□□□ 0.31
VPS9D1-202ENST00000561976 LRRCC1Q9C099 1032 aa16.99■□□□□ 0.31
VPS9D1-202ENST00000561976 FAM13BQ9NYF5 915 aa16.99■□□□□ 0.31
VPS9D1-202ENST00000561976 PODXL2Q9NZ53 605 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms