RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TSPYL6Q8N831 410 aa6.85□□□□□ -1.31
VPS13C-209ENST00000560637 MBIPQ9NS73 344 aa6.85□□□□□ -1.31
VPS13C-209ENST00000560637 PIK3C2BO00750 1634 aa6.84□□□□□ -1.31
VPS13C-209ENST00000560637 ALKQ9UM73 1620 aa6.84□□□□□ -1.31
VPS13C-209ENST00000560637 PRIM1P49642 420 aaKnown RBP6.84□□□□□ -1.31
VPS13C-209ENST00000560637 SSH1Q8WYL5 1049 aa6.84□□□□□ -1.31
VPS13C-209ENST00000560637 SIL1Q9H173 461 aa6.84□□□□□ -1.31
VPS13C-209ENST00000560637 ADGRL3Q9HAR2 1447 aa6.84□□□□□ -1.31
VPS13C-209ENST00000560637 IL13P35225 146 aa6.84□□□□□ -1.31
VPS13C-209ENST00000560637 ANKRD45Q5TZF3 282 aa6.84□□□□□ -1.31
VPS13C-209ENST00000560637 QTRT2Q9H974 415 aaKnown RBP6.84□□□□□ -1.31
VPS13C-209ENST00000560637 TNNQ9UQP3 1299 aa6.84□□□□□ -1.31
VPS13C-209ENST00000560637 FANCIQ9NVI1 1328 aa6.84□□□□□ -1.31
VPS13C-209ENST00000560637 NINLQ9Y2I6 1382 aa6.84□□□□□ -1.32
VPS13C-209ENST00000560637 EDC4Q6P2E9 1401 aaKnown RBP6.84□□□□□ -1.32
VPS13C-209ENST00000560637 DDX58O95786 925 aaKnown RBP6.83□□□□□ -1.32
VPS13C-209ENST00000560637 AMOTQ4VCS5 1084 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 CCDC30Q5VVM6 783 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 UPF2Q9HAU5 1272 aaKnown RBP6.83□□□□□ -1.32
VPS13C-209ENST00000560637 SPHKAPQ2M3C7 1700 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 ADGRB3O60242 1522 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 SLIT1O75093 1534 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 PARD3Q8TEW0 1356 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 IQGAP1P46940 1657 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 MYOM2P54296 1465 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 CCDC24Q8N4L8 307 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 C8orf58Q8NAV2 365 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 TRIM6-TRIM34B2RNG4 842 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 KCNQ3O43525 872 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 FBXW7Q969H0 707 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 SIRT1Q96EB6 747 aa6.83□□□□□ -1.32
VPS13C-209ENST00000560637 G3V3G9 751 aa6.82□□□□□ -1.32
VPS13C-209ENST00000560637 SLFN5Q08AF3 891 aa6.82□□□□□ -1.32
VPS13C-209ENST00000560637 DCAF8Q5TAQ9 597 aa6.82□□□□□ -1.32
VPS13C-209ENST00000560637 RSPH6AQ9H0K4 717 aa6.82□□□□□ -1.32
VPS13C-209ENST00000560637 TBC1D2BQ9UPU7 963 aa6.82□□□□□ -1.32
VPS13C-209ENST00000560637 NEURL4Q96JN8 1562 aa6.82□□□□□ -1.32
VPS13C-209ENST00000560637 HSP90AB1P08238 724 aaKnown RBP6.82□□□□□ -1.32
VPS13C-209ENST00000560637 KCNJ4P48050 445 aa6.82□□□□□ -1.32
VPS13C-209ENST00000560637 ARHGEF25Q86VW2 580 aa6.82□□□□□ -1.32
VPS13C-209ENST00000560637 LNPKQ9C0E8 428 aa6.82□□□□□ -1.32
VPS13C-209ENST00000560637 ARHGAP23Q9P227 1491 aa6.82□□□□□ -1.32
VPS13C-209ENST00000560637 ATP6V1AP38606 617 aa6.82□□□□□ -1.32
VPS13C-209ENST00000560637 NAP1L2Q9ULW6 460 aaPredicted RBP6.82□□□□□ -1.32
VPS13C-209ENST00000560637 USP6P35125 1406 aa6.82□□□□□ -1.32
VPS13C-209ENST00000560637 API5Q9BZZ5 524 aaKnown RBP6.81□□□□□ -1.32
VPS13C-209ENST00000560637 NSD2O96028 1365 aa6.81□□□□□ -1.32
VPS13C-209ENST00000560637 SPATA31A3Q5VYP0 1347 aa6.81□□□□□ -1.32
VPS13C-209ENST00000560637 UBTFL1P0CB47 393 aaPredicted RBP6.81□□□□□ -1.32
VPS13C-209ENST00000560637 ANP32AP39687 249 aaKnown RBP6.81□□□□□ -1.32
VPS13C-209ENST00000560637 NEUROD6Q96NK8 337 aa6.81□□□□□ -1.32
VPS13C-209ENST00000560637 RWDD1Q9H446 243 aaPredicted RBP6.81□□□□□ -1.32
VPS13C-209ENST00000560637 SBNO2Q9Y2G9 1366 aa6.81□□□□□ -1.32
VPS13C-209ENST00000560637 KIF6Q6ZMV9 814 aa6.81□□□□□ -1.32
VPS13C-209ENST00000560637 SPRYD3Q8NCJ5 442 aa6.81□□□□□ -1.32
VPS13C-209ENST00000560637 PUS7Q96PZ0 661 aaKnown RBP6.81□□□□□ -1.32
VPS13C-209ENST00000560637 PODXL2Q9NZ53 605 aa6.81□□□□□ -1.32
VPS13C-209ENST00000560637 CHPF2Q9P2E5 772 aa6.81□□□□□ -1.32
VPS13C-209ENST00000560637 VWDEQ8N2E2 1590 aa6.81□□□□□ -1.32
VPS13C-209ENST00000560637 NCOA3Q9Y6Q9 1424 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 WDR63Q8IWG1 891 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 RILPL2Q969X0 211 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 MYD88Q99836 296 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 MROH1Q8NDA8 1641 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 ZFYVE9O95405 1425 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 ARHGEF10O15013 1369 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 STARD3NLO95772 234 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 TMEM57Q8N5G2 664 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 FMNL2Q96PY5 1086 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 TMX4Q9H1E5 349 aaPredicted RBP6.8□□□□□ -1.32
VPS13C-209ENST00000560637 ISY1Q9ULR0 285 aaKnown RBP6.8□□□□□ -1.32
VPS13C-209ENST00000560637 SBNO1A3KN83 1393 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 KIF16BQ96L93 1317 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 PI4KAP2A4QPH2 592 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 TRIM37O94972 964 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 TMEM132AQ24JP5 1023 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 SMIM5Q71RC9 77 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 PI4KAP1Q8N8J0 262 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 CFAP44Q96MT7 982 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 NEXMIFQ5QGS0 1516 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 UBR1Q8IWV7 1749 aa6.8□□□□□ -1.32
VPS13C-209ENST00000560637 DIP2AQ14689 1571 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 AFF2P51816 1311 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 SURF6O75683 361 aaKnown RBP6.79□□□□□ -1.32
VPS13C-209ENST00000560637 A1BGP04217 495 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 CNKSR2Q8WXI2 1034 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 CHMP4AQ9BY43 222 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 CHMP4BQ9H444 224 aaKnown RBP6.79□□□□□ -1.32
VPS13C-209ENST00000560637 NKTRP30414 1462 aaKnown RBP6.79□□□□□ -1.32
VPS13C-209ENST00000560637 HMMRO75330 724 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 RARSP54136 660 aaKnown RBP6.79□□□□□ -1.32
VPS13C-209ENST00000560637 AKAP4Q5JQC9 854 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 COPS6Q7L5N1 327 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 PHAXQ9H814 394 aaKnown RBP6.79□□□□□ -1.32
VPS13C-209ENST00000560637 FAM135BQ49AJ0 1406 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 PIK3R4Q99570 1358 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 ERBB3P21860 1342 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 C1orf167Q5SNV9 1468 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 PRAMEF22A3QJZ6 481 aa6.79□□□□□ -1.32
VPS13C-209ENST00000560637 RNMTO43148 476 aaKnown RBP6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms