RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 IGSF1Q8N6C5 1336 aa14□□□□□ -0.17
SPG11-217ENST00000559511 ZBTB7BO15156 539 aaPredicted RBP13.99□□□□□ -0.17
SPG11-217ENST00000559511 HOXC9P31274 260 aa13.99□□□□□ -0.17
SPG11-217ENST00000559511 PHRF1Q9P1Y6 1649 aaKnown RBP13.99□□□□□ -0.17
SPG11-217ENST00000559511 RGPD2P0DJD1 1756 aa13.99□□□□□ -0.17
SPG11-217ENST00000559511 EYA1Q99502 592 aa13.99□□□□□ -0.17
SPG11-217ENST00000559511 KRT24Q2M2I5 525 aa13.98□□□□□ -0.17
SPG11-217ENST00000559511 XIRP1Q702N8 1843 aaKnown RBP13.98□□□□□ -0.17
SPG11-217ENST00000559511 CHL1O00533 1208 aa13.97□□□□□ -0.17
SPG11-217ENST00000559511 CRB1P82279 1406 aa13.97□□□□□ -0.17
SPG11-217ENST00000559511 C19orf44Q9H6X5 657 aa13.97□□□□□ -0.17
SPG11-217ENST00000559511 C1orf167Q5SNV9 1468 aa13.97□□□□□ -0.17
SPG11-217ENST00000559511 FOXO3O43524 673 aa13.97□□□□□ -0.17
SPG11-217ENST00000559511 C1orf115Q9H7X2 142 aa13.97□□□□□ -0.17
SPG11-217ENST00000559511 RTL1A6NKG5 1358 aa13.96□□□□□ -0.17
SPG11-217ENST00000559511 STRCQ7RTU9 1775 aa13.96□□□□□ -0.17
SPG11-217ENST00000559511 HSPA2P54652 639 aa13.96□□□□□ -0.17
SPG11-217ENST00000559511 MTHFSDQ2M296 383 aaKnown RBP13.96□□□□□ -0.17
SPG11-217ENST00000559511 DAXXQ9UER7 740 aaPredicted RBP13.96□□□□□ -0.17
SPG11-217ENST00000559511 ALS2Q96Q42 1657 aa13.95□□□□□ -0.18
SPG11-217ENST00000559511 SLIT3O75094 1523 aa13.95□□□□□ -0.18
SPG11-217ENST00000559511 XPCQ01831 940 aaPredicted RBP13.95□□□□□ -0.18
SPG11-217ENST00000559511 NUCB1Q02818 461 aa13.95□□□□□ -0.18
SPG11-217ENST00000559511 RTL5Q5HYW3 569 aaPredicted RBP13.95□□□□□ -0.18
SPG11-217ENST00000559511 TMEM94Q12767 1356 aa13.95□□□□□ -0.18
SPG11-217ENST00000559511 API5Q9BZZ5 524 aaKnown RBP13.94□□□□□ -0.18
SPG11-217ENST00000559511 KIAA0232Q92628 1395 aa13.94□□□□□ -0.18
SPG11-217ENST00000559511 RGPD5Q99666 1765 aa13.94□□□□□ -0.18
SPG11-217ENST00000559511 RGS12O14924 1447 aa13.94□□□□□ -0.18
SPG11-217ENST00000559511 MST1RQ04912 1400 aa13.94□□□□□ -0.18
SPG11-217ENST00000559511 SIRT2Q8IXJ6 389 aa13.93□□□□□ -0.18
SPG11-217ENST00000559511 IP6K1Q92551 441 aa13.93□□□□□ -0.18
SPG11-217ENST00000559511 CHMP4BQ9H444 224 aaKnown RBP13.93□□□□□ -0.18
SPG11-217ENST00000559511 MIS18AQ9NYP9 233 aa13.93□□□□□ -0.18
SPG11-217ENST00000559511 LRRC37A3O60309 1634 aa13.93□□□□□ -0.18
SPG11-217ENST00000559511 DEKP35659 375 aaKnown RBP13.93□□□□□ -0.18
SPG11-217ENST00000559511 KCNH5Q8NCM2 988 aa13.93□□□□□ -0.18
SPG11-217ENST00000559511 LTV1Q96GA3 475 aaPredicted RBP13.93□□□□□ -0.18
SPG11-217ENST00000559511 TBC1D32Q96NH3 1257 aa13.93□□□□□ -0.18
SPG11-217ENST00000559511 LNPKQ9C0E8 428 aa13.93□□□□□ -0.18
SPG11-217ENST00000559511 DCCP43146 1447 aa13.93□□□□□ -0.18
SPG11-217ENST00000559511 LMTK3Q96Q04 1460 aa13.92□□□□□ -0.18
SPG11-217ENST00000559511 NCOA3Q9Y6Q9 1424 aa13.92□□□□□ -0.18
SPG11-217ENST00000559511 KDM4FA0A1W2PPD8 638 aa13.92□□□□□ -0.18
SPG11-217ENST00000559511 KRT28Q7Z3Y7 464 aa13.92□□□□□ -0.18
SPG11-217ENST00000559511 CHD1LQ86WJ1 897 aa13.92□□□□□ -0.18
SPG11-217ENST00000559511 UPF2Q9HAU5 1272 aaKnown RBP13.91□□□□□ -0.18
SPG11-217ENST00000559511 ATF3P18847 181 aa13.9□□□□□ -0.18
SPG11-217ENST00000559511 GAS2L2Q8NHY3 880 aa13.9□□□□□ -0.18
SPG11-217ENST00000559511 RTF1Q92541 710 aaKnown RBP13.9□□□□□ -0.18
SPG11-217ENST00000559511 GCP02774 474 aa13.9□□□□□ -0.18
SPG11-217ENST00000559511 HAP1P54257 671 aaPredicted RBP13.9□□□□□ -0.18
SPG11-217ENST00000559511 INTS3Q68E01 1043 aaKnown RBP13.9□□□□□ -0.18
SPG11-217ENST00000559511 GCC1Q96CN9 775 aa13.9□□□□□ -0.18
SPG11-217ENST00000559511 USP35Q9P2H5 1018 aa13.89□□□□□ -0.19
SPG11-217ENST00000559511 TSPYL4Q9UJ04 414 aa13.89□□□□□ -0.19
SPG11-217ENST00000559511 ZBTB7CA1YPR0 619 aa13.88□□□□□ -0.19
SPG11-217ENST00000559511 ANKRD45Q5TZF3 282 aa13.88□□□□□ -0.19
SPG11-217ENST00000559511 LMOD2Q6P5Q4 547 aa13.88□□□□□ -0.19
SPG11-217ENST00000559511 USHBP1Q8N6Y0 703 aa13.88□□□□□ -0.19
SPG11-217ENST00000559511 MED1Q15648 1581 aaPredicted RBP13.88□□□□□ -0.19
SPG11-217ENST00000559511 ARHGEF25Q86VW2 580 aa13.88□□□□□ -0.19
SPG11-217ENST00000559511 PTPRCP08575 1304 aa13.87□□□□□ -0.19
SPG11-217ENST00000559511 PLEKHG5O94827 1062 aa13.87□□□□□ -0.19
SPG11-217ENST00000559511 NBPF6Q5VWK0 638 aa13.87□□□□□ -0.19
SPG11-217ENST00000559511 NBPF4Q96M43 638 aa13.87□□□□□ -0.19
SPG11-217ENST00000559511 FAM208AQ9UK61 1670 aaKnown RBP13.87□□□□□ -0.19
SPG11-217ENST00000559511 CAMTA1Q9Y6Y1 1673 aa13.87□□□□□ -0.19
SPG11-217ENST00000559511 MSH6P52701 1360 aa13.87□□□□□ -0.19
SPG11-217ENST00000559511 ATP10DQ9P241 1426 aa13.87□□□□□ -0.19
SPG11-217ENST00000559511 HTATSF1O43719 755 aaKnown RBP13.87□□□□□ -0.19
SPG11-217ENST00000559511 MFAP1P55081 439 aaKnown RBP13.87□□□□□ -0.19
SPG11-217ENST00000559511 NFKBIBQ15653 356 aa13.87□□□□□ -0.19
SPG11-217ENST00000559511 AEBP2Q6ZN18 517 aaPredicted RBP13.87□□□□□ -0.19
SPG11-217ENST00000559511 CRYBG1Q9Y4K1 1723 aa13.86□□□□□ -0.19
SPG11-217ENST00000559511 GNAT3A8MTJ3 354 aa13.86□□□□□ -0.19
SPG11-217ENST00000559511 SLC4A2P04920 1241 aa13.86□□□□□ -0.19
SPG11-217ENST00000559511 DDX17Q92841 729 aaKnown RBP13.86□□□□□ -0.19
SPG11-217ENST00000559511 LMO7Q8WWI1 1683 aa13.86□□□□□ -0.19
SPG11-217ENST00000559511 CACNA1FO60840 1977 aa13.86□□□□□ -0.19
SPG11-217ENST00000559511 BECN1Q14457 450 aa13.85□□□□□ -0.19
SPG11-217ENST00000559511 CADPS2Q86UW7 1296 aa13.85□□□□□ -0.19
SPG11-217ENST00000559511 MAP3K5Q99683 1374 aa13.85□□□□□ -0.19
SPG11-217ENST00000559511 G2E3Q7L622 706 aa13.85□□□□□ -0.19
SPG11-217ENST00000559511 C22orf23Q9BZE7 217 aa13.85□□□□□ -0.19
SPG11-217ENST00000559511 BMP2KLQ5H9B9 411 aa13.84□□□□□ -0.19
SPG11-217ENST00000559511 LRRC59Q96AG4 307 aaKnown RBP13.84□□□□□ -0.19
SPG11-217ENST00000559511 NCAPD2Q15021 1401 aa13.84□□□□□ -0.19
SPG11-217ENST00000559511 COL18A1P39060 1754 aa13.84□□□□□ -0.19
SPG11-217ENST00000559511 IL17REQ8NFR9 667 aa13.84□□□□□ -0.19
SPG11-217ENST00000559511 TBC1D2Q9BYX2 928 aa13.84□□□□□ -0.19
SPG11-217ENST00000559511 MEIS3Q99687 375 aa13.83□□□□□ -0.2
SPG11-217ENST00000559511 PXDNQ92626 1479 aa13.83□□□□□ -0.2
SPG11-217ENST00000559511 ANKRD44Q8N8A2 993 aa13.82□□□□□ -0.2
SPG11-217ENST00000559511 DCTPP1Q9H773 170 aa13.82□□□□□ -0.2
SPG11-217ENST00000559511 AXIN2Q9Y2T1 843 aa13.82□□□□□ -0.2
SPG11-217ENST00000559511 CEP85Q6P2H3 762 aa13.82□□□□□ -0.2
SPG11-217ENST00000559511 KDM3BQ7LBC6 1761 aa13.82□□□□□ -0.2
SPG11-217ENST00000559511 NPHP3Q7Z494 1330 aa13.82□□□□□ -0.2
SPG11-217ENST00000559511 F6X3S4 739 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms