RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	ELL2	O00472	640 aa	Predicted RBP	20.02	■□□□□ 0.8
SHMT2-231	ENST00000557433	A2ML1	A8K2U0	1454 aa		20.02	■□□□□ 0.8
SHMT2-231	ENST00000557433	TERF1	P54274	439 aa		20.01	■□□□□ 0.79
SHMT2-231	ENST00000557433	RGS12	O14924	1447 aa		20.01	■□□□□ 0.79
SHMT2-231	ENST00000557433	HMMR	O75330	724 aa		20	■□□□□ 0.79
SHMT2-231	ENST00000557433	HSP90AA2P	Q14568	343 aa	Predicted RBP	20	■□□□□ 0.79
SHMT2-231	ENST00000557433	CEP85	Q6P2H3	762 aa		20	■□□□□ 0.79
SHMT2-231	ENST00000557433	AGL	P35573	1532 aa		20	■□□□□ 0.79
SHMT2-231	ENST00000557433	SPATA31D1	Q6ZQQ2	1576 aa		19.99	■□□□□ 0.79
SHMT2-231	ENST00000557433	CHL1	O00533	1208 aa		19.99	■□□□□ 0.79
SHMT2-231	ENST00000557433	NME9	Q86XW9	330 aa		19.99	■□□□□ 0.79
SHMT2-231	ENST00000557433	OSBPL3	Q9H4L5	887 aa		19.99	■□□□□ 0.79
SHMT2-231	ENST00000557433	LMBRD1	Q9NUN5	540 aa		19.99	■□□□□ 0.79
SHMT2-231	ENST00000557433	RTL1	A6NKG5	1358 aa		19.99	■□□□□ 0.79
SHMT2-231	ENST00000557433	MCM2	P49736	904 aa		19.98	■□□□□ 0.79
SHMT2-231	ENST00000557433	C3	P01024	1663 aa		19.98	■□□□□ 0.79
SHMT2-231	ENST00000557433	AKAP12	Q02952	1782 aa		19.98	■□□□□ 0.79
SHMT2-231	ENST00000557433	SDS	P20132	328 aa		19.98	■□□□□ 0.79
SHMT2-231	ENST00000557433	MCTP1	Q6DN14	999 aa		19.98	■□□□□ 0.79
SHMT2-231	ENST00000557433	WAPL	Q7Z5K2	1190 aa		19.98	■□□□□ 0.79
SHMT2-231	ENST00000557433	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	19.98	■□□□□ 0.79
SHMT2-231	ENST00000557433	CCDC61	Q9Y6R9	512 aa		19.98	■□□□□ 0.79
SHMT2-231	ENST00000557433	TECPR2	O15040	1411 aa		19.97	■□□□□ 0.79
SHMT2-231	ENST00000557433	ERC2	O15083	957 aa		19.97	■□□□□ 0.79
SHMT2-231	ENST00000557433	FBLN1	P23142	703 aa		19.97	■□□□□ 0.79
SHMT2-231	ENST00000557433	FBXO31	Q5XUX0	539 aa	Predicted RBP	19.97	■□□□□ 0.79
SHMT2-231	ENST00000557433	MSN	P26038	577 aa	Known RBP	19.96	■□□□□ 0.79
SHMT2-231	ENST00000557433	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	19.96	■□□□□ 0.79
SHMT2-231	ENST00000557433	ZSCAN23	Q3MJ62	389 aa		19.96	■□□□□ 0.79
SHMT2-231	ENST00000557433	OFD1	O75665	1012 aa		19.95	■□□□□ 0.78
SHMT2-231	ENST00000557433	NUDT16	Q96DE0	195 aa	Known RBP	19.95	■□□□□ 0.78
SHMT2-231	ENST00000557433	ITSN1	Q15811	1721 aa		19.95	■□□□□ 0.78
SHMT2-231	ENST00000557433	CPS1	P31327	1500 aa		19.94	■□□□□ 0.78
SHMT2-231	ENST00000557433	PDLIM2	Q96JY6	352 aa		19.94	■□□□□ 0.78
SHMT2-231	ENST00000557433	MSH6	P52701	1360 aa		19.94	■□□□□ 0.78
SHMT2-231	ENST00000557433	FAM83G	A6ND36	823 aa		19.93	■□□□□ 0.78
SHMT2-231	ENST00000557433	MCM5	P33992	734 aa		19.93	■□□□□ 0.78
SHMT2-231	ENST00000557433	CAVIN1	Q6NZI2	390 aa	Known RBP	19.93	■□□□□ 0.78
SHMT2-231	ENST00000557433	C16orf71	Q8IYS4	520 aa	Predicted RBP	19.93	■□□□□ 0.78
SHMT2-231	ENST00000557433	MBD3	O95983	291 aa		19.92	■□□□□ 0.78
SHMT2-231	ENST00000557433	CCT4	P50991	539 aa	Known RBP	19.92	■□□□□ 0.78
SHMT2-231	ENST00000557433	NRXN3	Q9Y4C0	1643 aa		19.91	■□□□□ 0.78
SHMT2-231	ENST00000557433	ARHGEF10	O15013	1369 aa		19.91	■□□□□ 0.78
SHMT2-231	ENST00000557433	EPB41L2	O43491	1005 aa	Known RBP	19.9	■□□□□ 0.78
SHMT2-231	ENST00000557433	ANAPC15	P60006	121 aa		19.9	■□□□□ 0.78
SHMT2-231	ENST00000557433	SENP3	Q9H4L4	574 aa	Predicted RBP	19.9	■□□□□ 0.78
SHMT2-231	ENST00000557433	NOL7	Q9UMY1	257 aa	Known RBP	19.9	■□□□□ 0.78
SHMT2-231	ENST00000557433	MCC	P23508	829 aa		19.9	■□□□□ 0.78
SHMT2-231	ENST00000557433	HDGF	P51858	240 aa	Known RBP	19.9	■□□□□ 0.78
SHMT2-231	ENST00000557433	RRS1	Q15050	365 aa	Known RBP	19.9	■□□□□ 0.78
SHMT2-231	ENST00000557433	SSH2	Q76I76	1423 aa		19.89	■□□□□ 0.78
SHMT2-231	ENST00000557433	TTC21B	Q7Z4L5	1316 aa		19.89	■□□□□ 0.77
SHMT2-231	ENST00000557433	ZNF500	O60304	480 aa	Predicted RBP	19.89	■□□□□ 0.77
SHMT2-231	ENST00000557433	NCL	P19338	710 aa	Known RBP	19.89	■□□□□ 0.77
SHMT2-231	ENST00000557433	DCTN1	Q14203	1278 aa		19.89	■□□□□ 0.77
SHMT2-231	ENST00000557433	EIF4A2	Q14240	407 aa	Known RBP	19.89	■□□□□ 0.77
SHMT2-231	ENST00000557433	IL17RA	Q96F46	866 aa		19.89	■□□□□ 0.77
SHMT2-231	ENST00000557433	LRSAM1	Q6UWE0	723 aa		19.88	■□□□□ 0.77
SHMT2-231	ENST00000557433	OTUD7A	Q8TE49	926 aa	Predicted RBP	19.88	■□□□□ 0.77
SHMT2-231	ENST00000557433	INTS4	Q96HW7	963 aa	Known RBP	19.88	■□□□□ 0.77
SHMT2-231	ENST00000557433	ZRANB1	Q9UGI0	708 aa		19.88	■□□□□ 0.77
SHMT2-231	ENST00000557433	PDE1A	P54750	535 aa		19.88	■□□□□ 0.77
SHMT2-231	ENST00000557433	SULT6B1	Q6IMI4	303 aa		19.88	■□□□□ 0.77
SHMT2-231	ENST00000557433	MEIS3	Q99687	375 aa		19.88	■□□□□ 0.77
SHMT2-231	ENST00000557433	CRB1	P82279	1406 aa		19.88	■□□□□ 0.77
SHMT2-231	ENST00000557433	RGPD1	P0DJD0	1748 aa		19.87	■□□□□ 0.77
SHMT2-231	ENST00000557433	PRPF40A	O75400	957 aa	Known RBP	19.87	■□□□□ 0.77
SHMT2-231	ENST00000557433	CYB5RL	Q6IPT4	315 aa		19.87	■□□□□ 0.77
SHMT2-231	ENST00000557433	KIAA1211	Q6ZU35	1233 aa		19.87	■□□□□ 0.77
SHMT2-231	ENST00000557433	RBSN	Q9H1K0	784 aa		19.86	■□□□□ 0.77
SHMT2-231	ENST00000557433	ZDHHC9	Q9Y397	364 aa		19.86	■□□□□ 0.77
SHMT2-231	ENST00000557433	OVOS2	A0A0J9YW53	1432 aa		19.86	■□□□□ 0.77
SHMT2-231	ENST00000557433	OVOS2	Q6IE36	1432 aa		19.86	■□□□□ 0.77
SHMT2-231	ENST00000557433	CUL4A	Q13619	759 aa		19.86	■□□□□ 0.77
SHMT2-231	ENST00000557433	CSPP1	Q1MSJ5	1256 aa		19.86	■□□□□ 0.77
SHMT2-231	ENST00000557433	ZGPAT	Q8N5A5	531 aa	Known RBP	19.86	■□□□□ 0.77
SHMT2-231	ENST00000557433	PDCL3	Q9H2J4	239 aa		19.86	■□□□□ 0.77
SHMT2-231	ENST00000557433	GPT2	Q8TD30	523 aa		19.85	■□□□□ 0.77
SHMT2-231	ENST00000557433	SYAP1	Q96A49	352 aa	Predicted RBP	19.85	■□□□□ 0.77
SHMT2-231	ENST00000557433	SOS1	Q07889	1333 aa	Predicted RBP	19.85	■□□□□ 0.77
SHMT2-231	ENST00000557433	MET	P08581	1390 aa		19.84	■□□□□ 0.77
SHMT2-231	ENST00000557433	SMARCA5	O60264	1052 aa	Predicted RBP	19.84	■□□□□ 0.77
SHMT2-231	ENST00000557433	GNAI2	P04899	355 aa		19.84	■□□□□ 0.77
SHMT2-231	ENST00000557433	SLC4A2	P04920	1241 aa		19.84	■□□□□ 0.77
SHMT2-231	ENST00000557433	PRIM1	P49642	420 aa	Known RBP	19.84	■□□□□ 0.77
SHMT2-231	ENST00000557433	PKP1	Q13835	747 aa		19.84	■□□□□ 0.77
SHMT2-231	ENST00000557433	SRCIN1	Q9C0H9	1055 aa		19.84	■□□□□ 0.77
SHMT2-231	ENST00000557433	AK9	Q5TCS8	1911 aa		19.84	■□□□□ 0.77
SHMT2-231	ENST00000557433	USP31	Q70CQ4	1352 aa		19.84	■□□□□ 0.77
SHMT2-231	ENST00000557433	NALCN	Q8IZF0	1738 aa		19.84	■□□□□ 0.77
SHMT2-231	ENST00000557433	AOX1	Q06278	1338 aa		19.83	■□□□□ 0.77
SHMT2-231	ENST00000557433	BRD1	O95696	1058 aa		19.83	■□□□□ 0.77
SHMT2-231	ENST00000557433	KLHL34	Q8N239	644 aa		19.83	■□□□□ 0.77
SHMT2-231	ENST00000557433	TMX3	Q96JJ7	454 aa		19.83	■□□□□ 0.77
SHMT2-231	ENST00000557433	MAP7D2	Q96T17	732 aa		19.83	■□□□□ 0.77
SHMT2-231	ENST00000557433	CCDC39	Q9UFE4	941 aa		19.83	■□□□□ 0.77
SHMT2-231	ENST00000557433	SALL3	Q9BXA9	1300 aa		19.83	■□□□□ 0.76
SHMT2-231	ENST00000557433	GNAI3	P08754	354 aa		19.82	■□□□□ 0.76
SHMT2-231	ENST00000557433	AEBP1	Q8IUX7	1158 aa		19.82	■□□□□ 0.76
SHMT2-231	ENST00000557433	ESYT1	Q9BSJ8	1104 aa		19.82	■□□□□ 0.76

Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms