RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 ERBB3P21860 1342 aa13.42□□□□□ -0.26
SYNE2-224ENST00000557024 EVC2Q86UK5 1308 aa13.42□□□□□ -0.26
SYNE2-224ENST00000557024 TTC21AQ8NDW8 1320 aa13.42□□□□□ -0.26
SYNE2-224ENST00000557024 ATP10DQ9P241 1426 aa13.42□□□□□ -0.26
SYNE2-224ENST00000557024 GRIN3BO60391 1043 aa13.42□□□□□ -0.26
SYNE2-224ENST00000557024 SLC27A3Q5K4L6 730 aa13.42□□□□□ -0.26
SYNE2-224ENST00000557024 ZNF692Q9BU19 519 aaPredicted RBP13.42□□□□□ -0.26
SYNE2-224ENST00000557024 RGPD5Q99666 1765 aa13.41□□□□□ -0.26
SYNE2-224ENST00000557024 BTAF1O14981 1849 aa13.41□□□□□ -0.26
SYNE2-224ENST00000557024 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.39□□□□□ -0.27
SYNE2-224ENST00000557024 DDX54Q8TDD1 881 aaKnown RBP13.39□□□□□ -0.27
SYNE2-224ENST00000557024 ANKRD24Q8TF21 1146 aa13.39□□□□□ -0.27
SYNE2-224ENST00000557024 ZNF526Q8TF50 670 aaPredicted RBP13.39□□□□□ -0.27
SYNE2-224ENST00000557024 SYTL4Q96C24 671 aaPredicted RBP13.39□□□□□ -0.27
SYNE2-224ENST00000557024 GPBP1L1Q9HC44 474 aaPredicted RBP13.39□□□□□ -0.27
SYNE2-224ENST00000557024 KTN1Q86UP2 1357 aaKnown RBP13.39□□□□□ -0.27
SYNE2-224ENST00000557024 HSPA6P17066 643 aa13.38□□□□□ -0.27
SYNE2-224ENST00000557024 RBM42Q9BTD8 480 aaKnown RBP13.38□□□□□ -0.27
SYNE2-224ENST00000557024 MSL1Q68DK7 614 aa13.37□□□□□ -0.27
SYNE2-224ENST00000557024 NME9Q86XW9 330 aa13.37□□□□□ -0.27
SYNE2-224ENST00000557024 PRIM1P49642 420 aaKnown RBP13.36□□□□□ -0.27
SYNE2-224ENST00000557024 COL23A1Q86Y22 540 aaPredicted RBP13.35□□□□□ -0.27
SYNE2-224ENST00000557024 USP31Q70CQ4 1352 aa13.34□□□□□ -0.27
SYNE2-224ENST00000557024 COL24A1Q17RW2 1714 aa13.34□□□□□ -0.27
SYNE2-224ENST00000557024 CCNL1Q9UK58 526 aaPredicted RBP13.34□□□□□ -0.27
SYNE2-224ENST00000557024 ADCY9O60503 1353 aa13.33□□□□□ -0.27
SYNE2-224ENST00000557024 NSD2O96028 1365 aa13.33□□□□□ -0.27
SYNE2-224ENST00000557024 ANKRD36BQ8N2N9 1353 aa13.33□□□□□ -0.27
SYNE2-224ENST00000557024 QSER1Q2KHR3 1735 aa13.33□□□□□ -0.27
SYNE2-224ENST00000557024 LTV1Q96GA3 475 aaPredicted RBP13.33□□□□□ -0.28
SYNE2-224ENST00000557024 SBNO2Q9Y2G9 1366 aa13.32□□□□□ -0.28
SYNE2-224ENST00000557024 POTEHQ6S545 545 aa13.31□□□□□ -0.28
SYNE2-224ENST00000557024 WWC3Q9ULE0 1092 aa13.31□□□□□ -0.28
SYNE2-224ENST00000557024 ZBTB12Q9Y330 459 aaPredicted RBP13.31□□□□□ -0.28
SYNE2-224ENST00000557024 CD2APQ9Y5K6 639 aa13.31□□□□□ -0.28
SYNE2-224ENST00000557024 TUBGCP6Q96RT7 1819 aa13.31□□□□□ -0.28
SYNE2-224ENST00000557024 IP6K1Q92551 441 aa13.29□□□□□ -0.28
SYNE2-224ENST00000557024 L3MBTL2Q969R5 705 aa13.29□□□□□ -0.28
SYNE2-224ENST00000557024 FBXO3Q9UK99 471 aa13.29□□□□□ -0.28
SYNE2-224ENST00000557024 ROCK2O75116 1388 aaKnown RBP13.29□□□□□ -0.28
SYNE2-224ENST00000557024 USP47Q96K76 1375 aa13.29□□□□□ -0.28
SYNE2-224ENST00000557024 ZCRB1Q8TBF4 217 aaKnown RBP13.28□□□□□ -0.28
SYNE2-224ENST00000557024 TMC1Q8TDI8 760 aa13.28□□□□□ -0.28
SYNE2-224ENST00000557024 CD163L1Q9NR16 1453 aa13.28□□□□□ -0.28
SYNE2-224ENST00000557024 KIF3CO14782 793 aa13.27□□□□□ -0.29
SYNE2-224ENST00000557024 TRIM26Q12899 539 aaPredicted RBP13.27□□□□□ -0.29
SYNE2-224ENST00000557024 MON2Q7Z3U7 1717 aa13.27□□□□□ -0.29
SYNE2-224ENST00000557024 LTN1O94822 1766 aa13.27□□□□□ -0.29
SYNE2-224ENST00000557024 USP54Q70EL1 1684 aa13.26□□□□□ -0.29
SYNE2-224ENST00000557024 HDGFL2Q7Z4V5 671 aaPredicted RBP13.26□□□□□ -0.29
SYNE2-224ENST00000557024 IGSF1Q8N6C5 1336 aa13.26□□□□□ -0.29
SYNE2-224ENST00000557024 DOT1LQ8TEK3 1739 aa13.26□□□□□ -0.29
SYNE2-224ENST00000557024 KAT6BQ8WYB5 2073 aa13.25□□□□□ -0.29
SYNE2-224ENST00000557024 LY75O60449 1722 aa13.25□□□□□ -0.29
SYNE2-224ENST00000557024 MEGF6O75095 1541 aa13.25□□□□□ -0.29
SYNE2-224ENST00000557024 EDC4Q6P2E9 1401 aaKnown RBP13.25□□□□□ -0.29
SYNE2-224ENST00000557024 APLP1P51693 650 aa13.25□□□□□ -0.29
SYNE2-224ENST00000557024 SLC12A5Q9H2X9 1139 aa13.25□□□□□ -0.29
SYNE2-224ENST00000557024 FLAD1Q8NFF5 587 aa13.24□□□□□ -0.29
SYNE2-224ENST00000557024 MAP3K19Q56UN5 1328 aa13.23□□□□□ -0.29
SYNE2-224ENST00000557024 HOXC9P31274 260 aa13.23□□□□□ -0.29
SYNE2-224ENST00000557024 SMIM5Q71RC9 77 aa13.23□□□□□ -0.29
SYNE2-224ENST00000557024 AMIGO3Q86WK7 504 aa13.23□□□□□ -0.29
SYNE2-224ENST00000557024 DNAJC5GQ8N7S2 189 aa13.23□□□□□ -0.29
SYNE2-224ENST00000557024 A0A1W2PP64 1363 aa13.22□□□□□ -0.29
SYNE2-224ENST00000557024 PHF14O94880 888 aa13.22□□□□□ -0.29
SYNE2-224ENST00000557024 FBLN1P23142 703 aa13.22□□□□□ -0.29
SYNE2-224ENST00000557024 AMPHP49418 695 aa13.22□□□□□ -0.29
SYNE2-224ENST00000557024 TERF2IPQ9NYB0 399 aa13.22□□□□□ -0.29
SYNE2-224ENST00000557024 PALLDQ8WX93 1383 aa13.21□□□□□ -0.29
SYNE2-224ENST00000557024 USHBP1Q8N6Y0 703 aa13.21□□□□□ -0.29
SYNE2-224ENST00000557024 AK7Q96M32 723 aa13.21□□□□□ -0.29
SYNE2-224ENST00000557024 FAM208AQ9UK61 1670 aaKnown RBP13.21□□□□□ -0.3
SYNE2-224ENST00000557024 NBPF6Q5VWK0 638 aa13.2□□□□□ -0.3
SYNE2-224ENST00000557024 NBPF4Q96M43 638 aa13.2□□□□□ -0.3
SYNE2-224ENST00000557024 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.19□□□□□ -0.3
SYNE2-224ENST00000557024 TOMM70O94826 608 aa13.19□□□□□ -0.3
SYNE2-224ENST00000557024 MPRIPQ6WCQ1 1025 aa13.19□□□□□ -0.3
SYNE2-224ENST00000557024 RAPGEF4Q8WZA2 1011 aa13.19□□□□□ -0.3
SYNE2-224ENST00000557024 COG3Q96JB2 828 aa13.19□□□□□ -0.3
SYNE2-224ENST00000557024 C5P01031 1676 aa13.18□□□□□ -0.3
SYNE2-224ENST00000557024 SIN3AQ96ST3 1273 aa13.18□□□□□ -0.3
SYNE2-224ENST00000557024 CGNL1Q0VF96 1302 aa13.17□□□□□ -0.3
SYNE2-224ENST00000557024 HMGB2P26583 209 aaKnown RBP13.17□□□□□ -0.3
SYNE2-224ENST00000557024 VASPP50552 380 aaPredicted RBP13.17□□□□□ -0.3
SYNE2-224ENST00000557024 NEUROD1Q13562 356 aa13.17□□□□□ -0.3
SYNE2-224ENST00000557024 COL13A1Q5TAT6 717 aaPredicted RBP13.17□□□□□ -0.3
SYNE2-224ENST00000557024 NMRK2Q9NPI5 230 aa13.17□□□□□ -0.3
SYNE2-224ENST00000557024 PCDH11XQ9BZA7 1347 aa13.16□□□□□ -0.3
SYNE2-224ENST00000557024 PCDH11YQ9BZA8 1340 aa13.16□□□□□ -0.3
SYNE2-224ENST00000557024 TATP17735 454 aaPredicted RBP13.16□□□□□ -0.3
SYNE2-224ENST00000557024 RRS1Q15050 365 aaKnown RBP13.16□□□□□ -0.3
SYNE2-224ENST00000557024 PCGF6Q9BYE7 350 aa13.16□□□□□ -0.3
SYNE2-224ENST00000557024 HTRA3P83110 453 aa13.15□□□□□ -0.3
SYNE2-224ENST00000557024 SMARCC1Q92922 1105 aaPredicted RBP13.15□□□□□ -0.3
SYNE2-224ENST00000557024 CARD11Q9BXL7 1154 aa13.15□□□□□ -0.3
SYNE2-224ENST00000557024 C4BP0C0L5 1744 aa13.15□□□□□ -0.3
SYNE2-224ENST00000557024 RTL1A6NKG5 1358 aa13.15□□□□□ -0.3
SYNE2-224ENST00000557024 NSD3Q9BZ95 1437 aa13.14□□□□□ -0.31
SYNE2-224ENST00000557024 CICQ96RK0 1608 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms