RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 ZCRB1Q8TBF4 217 aaKnown RBP19.45■□□□□ 0.7
CCDC88C-207ENST00000554051 EP400Q96L91 3159 aa19.44■□□□□ 0.7
CCDC88C-207ENST00000554051 USHBP1Q8N6Y0 703 aa19.43■□□□□ 0.7
CCDC88C-207ENST00000554051 EYA1Q99502 592 aa19.43■□□□□ 0.7
CCDC88C-207ENST00000554051 BCL11BQ9C0K0 894 aaPredicted RBP19.43■□□□□ 0.7
CCDC88C-207ENST00000554051 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.43■□□□□ 0.7
CCDC88C-207ENST00000554051 RREB1Q92766 1687 aa19.43■□□□□ 0.7
CCDC88C-207ENST00000554051 MTHFSP49914 203 aa19.42■□□□□ 0.7
CCDC88C-207ENST00000554051 DOT1LQ8TEK3 1739 aa19.42■□□□□ 0.7
CCDC88C-207ENST00000554051 CFAP53Q96M91 514 aa19.41■□□□□ 0.7
CCDC88C-207ENST00000554051 SPG7Q9UQ90 795 aa19.41■□□□□ 0.7
CCDC88C-207ENST00000554051 KDRP35968 1356 aa19.41■□□□□ 0.7
CCDC88C-207ENST00000554051 COL3A1P02461 1466 aaPredicted RBP19.41■□□□□ 0.7
CCDC88C-207ENST00000554051 APBA3O96018 575 aa19.4■□□□□ 0.7
CCDC88C-207ENST00000554051 DEFB132Q7Z7B7 95 aa19.39■□□□□ 0.69
CCDC88C-207ENST00000554051 DDX54Q8TDD1 881 aaKnown RBP19.39■□□□□ 0.69
CCDC88C-207ENST00000554051 DIAPH1O60610 1272 aaKnown RBP19.38■□□□□ 0.69
CCDC88C-207ENST00000554051 IL13P35225 146 aa19.38■□□□□ 0.69
CCDC88C-207ENST00000554051 PLSCR1O15162 318 aa19.37■□□□□ 0.69
CCDC88C-207ENST00000554051 BTAF1O14981 1849 aa19.37■□□□□ 0.69
CCDC88C-207ENST00000554051 NUP188Q5SRE5 1749 aa19.37■□□□□ 0.69
CCDC88C-207ENST00000554051 AMOTQ4VCS5 1084 aa19.36■□□□□ 0.69
CCDC88C-207ENST00000554051 CAMKK2Q96RR4 588 aa19.35■□□□□ 0.69
CCDC88C-207ENST00000554051 EN1Q05925 392 aaPredicted RBP19.34■□□□□ 0.69
CCDC88C-207ENST00000554051 RALBP1Q15311 655 aa19.34■□□□□ 0.69
CCDC88C-207ENST00000554051 HSP90AB1P08238 724 aaKnown RBP19.33■□□□□ 0.68
CCDC88C-207ENST00000554051 PPP2R1AP30153 589 aa19.33■□□□□ 0.68
CCDC88C-207ENST00000554051 PLEKHO1Q53GL0 409 aaPredicted RBP19.33■□□□□ 0.68
CCDC88C-207ENST00000554051 HMGB2P26583 209 aaKnown RBP19.32■□□□□ 0.68
CCDC88C-207ENST00000554051 CNGB1Q14028 1251 aaPredicted RBP19.32■□□□□ 0.68
CCDC88C-207ENST00000554051 SULT6B1Q6IMI4 303 aa19.32■□□□□ 0.68
CCDC88C-207ENST00000554051 IFNL2Q8IZJ0 200 aa19.32■□□□□ 0.68
CCDC88C-207ENST00000554051 NUDCQ9Y266 331 aa19.32■□□□□ 0.68
CCDC88C-207ENST00000554051 DDX10Q13206 875 aaKnown RBP19.31■□□□□ 0.68
CCDC88C-207ENST00000554051 NKX1-1Q15270 411 aaPredicted RBP19.31■□□□□ 0.68
CCDC88C-207ENST00000554051 TOGARAM1Q9Y4F4 1720 aa19.31■□□□□ 0.68
CCDC88C-207ENST00000554051 CYP27B1O15528 508 aa19.3■□□□□ 0.68
CCDC88C-207ENST00000554051 EZH2Q15910 746 aaKnown RBP19.3■□□□□ 0.68
CCDC88C-207ENST00000554051 ACSBG1Q96GR2 724 aa19.3■□□□□ 0.68
CCDC88C-207ENST00000554051 PHKG2P15735 406 aa19.28■□□□□ 0.68
CCDC88C-207ENST00000554051 C1orf141Q5JVX7 400 aa19.28■□□□□ 0.68
CCDC88C-207ENST00000554051 NBPF14Q5TI25 921 aa19.28■□□□□ 0.68
CCDC88C-207ENST00000554051 AEBP1Q8IUX7 1158 aa19.28■□□□□ 0.68
CCDC88C-207ENST00000554051 KCNQ2O43526 872 aa19.27■□□□□ 0.68
CCDC88C-207ENST00000554051 SYTL4Q96C24 671 aaPredicted RBP19.27■□□□□ 0.68
CCDC88C-207ENST00000554051 LY75O60449 1722 aa19.27■□□□□ 0.68
CCDC88C-207ENST00000554051 ITGB4P16144 1822 aa19.26■□□□□ 0.67
CCDC88C-207ENST00000554051 PRIM1P49642 420 aaKnown RBP19.26■□□□□ 0.67
CCDC88C-207ENST00000554051 SLC27A3Q5K4L6 730 aa19.26■□□□□ 0.67
CCDC88C-207ENST00000554051 ZNF530Q6P9A1 599 aaPredicted RBP19.26■□□□□ 0.67
CCDC88C-207ENST00000554051 KAT6BQ8WYB5 2073 aa19.26■□□□□ 0.67
CCDC88C-207ENST00000554051 MYBBP1AQ9BQG0 1328 aaKnown RBP19.25■□□□□ 0.67
CCDC88C-207ENST00000554051 ZNF316A6NFI3 1004 aaPredicted RBP19.25■□□□□ 0.67
CCDC88C-207ENST00000554051 U2SURPO15042 1029 aaKnown RBP19.25■□□□□ 0.67
CCDC88C-207ENST00000554051 DCAF5Q96JK2 942 aa19.25■□□□□ 0.67
CCDC88C-207ENST00000554051 PAPPAQ13219 1627 aa19.25■□□□□ 0.67
CCDC88C-207ENST00000554051 PTF1AQ7RTS3 328 aa19.24■□□□□ 0.67
CCDC88C-207ENST00000554051 TXNRD1Q16881 649 aa19.23■□□□□ 0.67
CCDC88C-207ENST00000554051 SMARCC1Q92922 1105 aaPredicted RBP19.23■□□□□ 0.67
CCDC88C-207ENST00000554051 HMOX1P09601 288 aa19.22■□□□□ 0.67
CCDC88C-207ENST00000554051 AKAP4Q5JQC9 854 aa19.22■□□□□ 0.67
CCDC88C-207ENST00000554051 TMOD3Q9NYL9 352 aa19.22■□□□□ 0.67
CCDC88C-207ENST00000554051 ERVV-2B6SEH9 535 aa19.21■□□□□ 0.67
CCDC88C-207ENST00000554051 GAS2L2Q8NHY3 880 aa19.21■□□□□ 0.67
CCDC88C-207ENST00000554051 SCN11AQ9UI33 1791 aa19.21■□□□□ 0.67
CCDC88C-207ENST00000554051 MRC1P22897 1456 aa19.21■□□□□ 0.67
CCDC88C-207ENST00000554051 ADAMTS7Q9UKP4 1686 aa19.2■□□□□ 0.66
CCDC88C-207ENST00000554051 KDM6AO15550 1401 aaPredicted RBP19.2■□□□□ 0.66
CCDC88C-207ENST00000554051 LRP5O75197 1615 aa19.2■□□□□ 0.66
CCDC88C-207ENST00000554051 PALLDQ8WX93 1383 aa19.19■□□□□ 0.66
CCDC88C-207ENST00000554051 NEFMP07197 916 aa19.19■□□□□ 0.66
CCDC88C-207ENST00000554051 U2AF1L5P0DN76 240 aaPredicted RBP19.19■□□□□ 0.66
CCDC88C-207ENST00000554051 U2AF1Q01081 240 aaKnown RBP eCLIP19.19■□□□□ 0.66
CCDC88C-207ENST00000554051 MPRIPQ6WCQ1 1025 aa19.19■□□□□ 0.66
CCDC88C-207ENST00000554051 ZNF831Q5JPB2 1677 aa19.18■□□□□ 0.66
CCDC88C-207ENST00000554051 QSER1Q2KHR3 1735 aa19.18■□□□□ 0.66
CCDC88C-207ENST00000554051 FCHSD2O94868 740 aa19.18■□□□□ 0.66
CCDC88C-207ENST00000554051 PNNQ9H307 717 aaKnown RBP19.18■□□□□ 0.66
CCDC88C-207ENST00000554051 STK32BQ9NY57 414 aa19.18■□□□□ 0.66
CCDC88C-207ENST00000554051 C5P01031 1676 aa19.17■□□□□ 0.66
CCDC88C-207ENST00000554051 RSPH6AQ9H0K4 717 aa19.17■□□□□ 0.66
CCDC88C-207ENST00000554051 MAP3K5Q99683 1374 aa19.17■□□□□ 0.66
CCDC88C-207ENST00000554051 PRKAR2BP31323 418 aa19.16■□□□□ 0.66
CCDC88C-207ENST00000554051 PRKRIP1Q9H875 184 aaPredicted RBP19.16■□□□□ 0.66
CCDC88C-207ENST00000554051 CCNL1Q9UK58 526 aaPredicted RBP19.16■□□□□ 0.66
CCDC88C-207ENST00000554051 R3HDM1Q15032 1099 aaKnown RBP19.15■□□□□ 0.66
CCDC88C-207ENST00000554051 PROM2Q8N271 834 aa19.15■□□□□ 0.66
CCDC88C-207ENST00000554051 PIGBQ92521 554 aa19.15■□□□□ 0.66
CCDC88C-207ENST00000554051 CICQ96RK0 1608 aaPredicted RBP19.14■□□□□ 0.66
CCDC88C-207ENST00000554051 VIRMAQ69YN4 1812 aaKnown RBP19.14■□□□□ 0.65
CCDC88C-207ENST00000554051 CABP4P57796 275 aa19.14■□□□□ 0.65
CCDC88C-207ENST00000554051 MTHFSDQ2M296 383 aaKnown RBP19.14■□□□□ 0.65
CCDC88C-207ENST00000554051 CASZ1Q86V15 1759 aa19.13■□□□□ 0.65
CCDC88C-207ENST00000554051 PSDA5PKW4 1024 aaPredicted RBP19.12■□□□□ 0.65
CCDC88C-207ENST00000554051 SLC15A2Q16348 729 aa19.12■□□□□ 0.65
CCDC88C-207ENST00000554051 ANO8Q9HCE9 1232 aaPredicted RBP19.12■□□□□ 0.65
CCDC88C-207ENST00000554051 TAF1LQ8IZX4 1826 aa19.11■□□□□ 0.65
CCDC88C-207ENST00000554051 GNAT3A8MTJ3 354 aa19.11■□□□□ 0.65
CCDC88C-207ENST00000554051 MAPK8IP3Q9UPT6 1336 aa19.1■□□□□ 0.65
CCDC88C-207ENST00000554051 SLC52A2Q9HAB3 445 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms