RNA–Protein interactions for RNA: ENST00000553945.1

NEK9-203, Transcript of NIMA related kinase 9, humanhuman

TSL 5

Gene NEK9, Length 786 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-203ENST00000553945 SHANK3Q9BYB0 1731 aa31.49■■■□□ 2.63
NEK9-203ENST00000553945 EN1Q05925 392 aaPredicted RBP31.48■■■□□ 2.63
NEK9-203ENST00000553945 IGSF1Q8N6C5 1336 aa31.47■■■□□ 2.63
NEK9-203ENST00000553945 BCL11BQ9C0K0 894 aaPredicted RBP31.45■■■□□ 2.63
NEK9-203ENST00000553945 IL13P35225 146 aa31.44■■■□□ 2.62
NEK9-203ENST00000553945 PTF1AQ7RTS3 328 aa31.44■■■□□ 2.62
NEK9-203ENST00000553945 ACSBG1Q96GR2 724 aa31.44■■■□□ 2.62
NEK9-203ENST00000553945 NHSQ6T4R5 1651 aa31.41■■■□□ 2.62
NEK9-203ENST00000553945 PKD1L3Q7Z443 1732 aa31.41■■■□□ 2.62
NEK9-203ENST00000553945 KCNQ2O43526 872 aa31.4■■■□□ 2.62
NEK9-203ENST00000553945 EZH2Q15910 746 aaKnown RBP31.4■■■□□ 2.62
NEK9-203ENST00000553945 PCDH11XQ9BZA7 1347 aa31.4■■■□□ 2.62
NEK9-203ENST00000553945 PCDH11YQ9BZA8 1340 aa31.4■■■□□ 2.62
NEK9-203ENST00000553945 DIAPH1O60610 1272 aaKnown RBP31.39■■■□□ 2.62
NEK9-203ENST00000553945 PPP2R1AP30153 589 aa31.39■■■□□ 2.62
NEK9-203ENST00000553945 SPG7Q9UQ90 795 aa31.39■■■□□ 2.62
NEK9-203ENST00000553945 SULT6B1Q6IMI4 303 aa31.38■■■□□ 2.61
NEK9-203ENST00000553945 AEBP1Q8IUX7 1158 aa31.38■■■□□ 2.61
NEK9-203ENST00000553945 CAMKK2Q96RR4 588 aa31.38■■■□□ 2.61
NEK9-203ENST00000553945 DOT1LQ8TEK3 1739 aa31.36■■■□□ 2.61
NEK9-203ENST00000553945 KAT6BQ8WYB5 2073 aa31.36■■■□□ 2.61
NEK9-203ENST00000553945 COL3A1P02461 1466 aaPredicted RBP31.35■■■□□ 2.61
NEK9-203ENST00000553945 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP31.35■■■□□ 2.612e-6■■□□□ 14
NEK9-203ENST00000553945 PARD3Q8TEW0 1356 aa31.34■■■□□ 2.61
NEK9-203ENST00000553945 CYP27B1O15528 508 aa31.34■■■□□ 2.61
NEK9-203ENST00000553945 CFAP53Q96M91 514 aa31.34■■■□□ 2.61
NEK9-203ENST00000553945 SYTL4Q96C24 671 aaPredicted RBP31.32■■■□□ 2.6
NEK9-203ENST00000553945 BTAF1O14981 1849 aa31.31■■■□□ 2.6
NEK9-203ENST00000553945 PLSCR1O15162 318 aa31.31■■■□□ 2.6
NEK9-203ENST00000553945 PRIM1P49642 420 aaKnown RBP31.31■■■□□ 2.6
NEK9-203ENST00000553945 KDRP35968 1356 aa31.3■■■□□ 2.6
NEK9-203ENST00000553945 PLEKHG2Q9H7P9 1386 aa31.3■■■□□ 2.6
NEK9-203ENST00000553945 RREB1Q92766 1687 aa31.3■■■□□ 2.6
NEK9-203ENST00000553945 RGPD3A6NKT7 1758 aaPredicted RBP31.3■■■□□ 2.6
NEK9-203ENST00000553945 RGPD4Q7Z3J3 1758 aa31.3■■■□□ 2.6
NEK9-203ENST00000553945 U2SURPO15042 1029 aaKnown RBP31.29■■■□□ 2.6
NEK9-203ENST00000553945 HMOX1P09601 288 aa31.29■■■□□ 2.6
NEK9-203ENST00000553945 PLEKHO1Q53GL0 409 aaPredicted RBP31.29■■■□□ 2.6
NEK9-203ENST00000553945 ZNF316A6NFI3 1004 aaPredicted RBP31.28■■■□□ 2.6
NEK9-203ENST00000553945 IFNL2Q8IZJ0 200 aa31.27■■■□□ 2.6
NEK9-203ENST00000553945 PHKG2P15735 406 aa31.26■■■□□ 2.59
NEK9-203ENST00000553945 NUP188Q5SRE5 1749 aa31.25■■■□□ 2.59
NEK9-203ENST00000553945 AMOTQ4VCS5 1084 aa31.25■■■□□ 2.59
NEK9-203ENST00000553945 NKX1-1Q15270 411 aaPredicted RBP31.24■■■□□ 2.59
NEK9-203ENST00000553945 RALBP1Q15311 655 aa31.23■■■□□ 2.59
NEK9-203ENST00000553945 ZNF530Q6P9A1 599 aaPredicted RBP31.23■■■□□ 2.59
NEK9-203ENST00000553945 TOGARAM1Q9Y4F4 1720 aa31.23■■■□□ 2.59
NEK9-203ENST00000553945 NUDCQ9Y266 331 aa31.21■■■□□ 2.59
NEK9-203ENST00000553945 TXNRD1Q16881 649 aa31.2■■■□□ 2.59
NEK9-203ENST00000553945 PROM2Q8N271 834 aa31.19■■■□□ 2.58
NEK9-203ENST00000553945 ITGB4P16144 1822 aa31.19■■■□□ 2.58
NEK9-203ENST00000553945 C1orf141Q5JVX7 400 aa31.18■■■□□ 2.58
NEK9-203ENST00000553945 MPRIPQ6WCQ1 1025 aa31.18■■■□□ 2.58
NEK9-203ENST00000553945 PSDA5PKW4 1024 aaPredicted RBP31.16■■■□□ 2.58
NEK9-203ENST00000553945 NBPF14Q5TI25 921 aa31.16■■■□□ 2.58
NEK9-203ENST00000553945 HSP90AB1P08238 724 aaKnown RBP31.15■■■□□ 2.58
NEK9-203ENST00000553945 U2AF1L5P0DN76 240 aaPredicted RBP31.14■■■□□ 2.58
NEK9-203ENST00000553945 U2AF1Q01081 240 aaKnown RBP eCLIP31.14■■■□□ 2.58
NEK9-203ENST00000553945 R3HDM1Q15032 1099 aaKnown RBP31.14■■■□□ 2.58
NEK9-203ENST00000553945 DCAF5Q96JK2 942 aa31.12■■■□□ 2.57
NEK9-203ENST00000553945 MYBBP1AQ9BQG0 1328 aaKnown RBP31.12■■■□□ 2.57
NEK9-203ENST00000553945 TMOD3Q9NYL9 352 aa31.11■■■□□ 2.57
NEK9-203ENST00000553945 MTHFSDQ2M296 383 aaKnown RBP31.1■■■□□ 2.57
NEK9-203ENST00000553945 PIGBQ92521 554 aa31.1■■■□□ 2.57
NEK9-203ENST00000553945 LY75O60449 1722 aa31.1■■■□□ 2.57
NEK9-203ENST00000553945 KDM6AO15550 1401 aaPredicted RBP31.09■■■□□ 2.57
NEK9-203ENST00000553945 AKAP4Q5JQC9 854 aa31.09■■■□□ 2.57
NEK9-203ENST00000553945 RSPH6AQ9H0K4 717 aa31.09■■■□□ 2.57
NEK9-203ENST00000553945 PRKAR2BP31323 418 aa31.08■■■□□ 2.57
NEK9-203ENST00000553945 PRKRIP1Q9H875 184 aaPredicted RBP31.08■■■□□ 2.57
NEK9-203ENST00000553945 ERVV-2B6SEH9 535 aa31.07■■■□□ 2.56
NEK9-203ENST00000553945 SLC27A3Q5K4L6 730 aa31.06■■■□□ 2.56
NEK9-203ENST00000553945 ANO8Q9HCE9 1232 aaPredicted RBP31.06■■■□□ 2.56
NEK9-203ENST00000553945 LRRC4BQ9NT99 713 aa31.06■■■□□ 2.56
NEK9-203ENST00000553945 FCHSD2O94868 740 aa31.04■■■□□ 2.56
NEK9-203ENST00000553945 KCNQ4P56696 695 aa31.04■■■□□ 2.56
NEK9-203ENST00000553945 CABP4P57796 275 aa31.04■■■□□ 2.56
NEK9-203ENST00000553945 SMARCC1Q92922 1105 aaPredicted RBP31.04■■■□□ 2.56
NEK9-203ENST00000553945 PALLDQ8WX93 1383 aa31.04■■■□□ 2.56
NEK9-203ENST00000553945 SCN11AQ9UI33 1791 aa31.03■■■□□ 2.56
NEK9-203ENST00000553945 STK32BQ9NY57 414 aa31.03■■■□□ 2.56
NEK9-203ENST00000553945 CCNL1Q9UK58 526 aaPredicted RBP31.03■■■□□ 2.56
NEK9-203ENST00000553945 GAS2L2Q8NHY3 880 aa31.02■■■□□ 2.56
NEK9-203ENST00000553945 PHACTR3Q96KR7 559 aa31.02■■■□□ 2.56
NEK9-203ENST00000553945 PAPPAQ13219 1627 aa31.01■■■□□ 2.55
NEK9-203ENST00000553945 LGR6Q9HBX8 967 aa31■■■□□ 2.55
NEK9-203ENST00000553945 ASAP1Q9ULH1 1129 aa31■■■□□ 2.55
NEK9-203ENST00000553945 VIRMAQ69YN4 1812 aaKnown RBP31■■■□□ 2.55
NEK9-203ENST00000553945 SLC15A2Q16348 729 aa30.98■■■□□ 2.55
NEK9-203ENST00000553945 MAP3K5Q99683 1374 aa30.97■■■□□ 2.55
NEK9-203ENST00000553945 RNMTO43148 476 aaKnown RBP30.97■■■□□ 2.55
NEK9-203ENST00000553945 NFATC2IPQ8NCF5 419 aa30.97■■■□□ 2.55
NEK9-203ENST00000553945 ATG3Q9NT62 314 aa30.97■■■□□ 2.55
NEK9-203ENST00000553945 GNAT3A8MTJ3 354 aa30.95■■■□□ 2.55
NEK9-203ENST00000553945 ADAMTS7Q9UKP4 1686 aa30.94■■■□□ 2.54
NEK9-203ENST00000553945 ZNF827Q17R98 1081 aa30.94■■■□□ 2.54
NEK9-203ENST00000553945 NEFMP07197 916 aa30.93■■■□□ 2.54
NEK9-203ENST00000553945 SRCAPQ6ZRS2 3230 aa30.92■■■□□ 2.54
NEK9-203ENST00000553945 LOC102724428A0A0B4J2F2 783 aa30.92■■■□□ 2.54
NEK9-203ENST00000553945 SIK1P57059 783 aa30.92■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms