RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 SOX12O15370 315 aa19.81■□□□□ 0.76
SHMT2-208ENST00000553868 CPSF1Q10570 1443 aaKnown RBP19.81■□□□□ 0.76
SHMT2-208ENST00000553868 PPIP5K1Q6PFW1 1433 aa19.81■□□□□ 0.76
SHMT2-208ENST00000553868 MSL1Q68DK7 614 aa19.8■□□□□ 0.76
SHMT2-208ENST00000553868 PCNTO95613 3336 aa19.79■□□□□ 0.76
SHMT2-208ENST00000553868 PRELPP51888 382 aa19.79■□□□□ 0.76
SHMT2-208ENST00000553868 TNS4Q8IZW8 715 aa19.79■□□□□ 0.76
SHMT2-208ENST00000553868 ABCC6O95255 1503 aa19.78■□□□□ 0.76
SHMT2-208ENST00000553868 HTRA3P83110 453 aa19.78■□□□□ 0.76
SHMT2-208ENST00000553868 ARHGEF25Q86VW2 580 aa19.78■□□□□ 0.76
SHMT2-208ENST00000553868 PIK3C2AO00443 1686 aa19.78■□□□□ 0.76
SHMT2-208ENST00000553868 ANP32CO43423 234 aa19.77■□□□□ 0.76
SHMT2-208ENST00000553868 MSH5O43196 834 aa19.76■□□□□ 0.75
SHMT2-208ENST00000553868 SRPK2P78362 688 aaKnown RBP19.75■□□□□ 0.75
SHMT2-208ENST00000553868 SLC27A3Q5K4L6 730 aa19.75■□□□□ 0.75
SHMT2-208ENST00000553868 CABP2Q9NPB3 220 aa19.75■□□□□ 0.75
SHMT2-208ENST00000553868 COL23A1Q86Y22 540 aaPredicted RBP19.74■□□□□ 0.75
SHMT2-208ENST00000553868 WDR90Q96KV7 1748 aa19.72■□□□□ 0.75
SHMT2-208ENST00000553868 MIER1Q8N108 512 aa19.71■□□□□ 0.75
SHMT2-208ENST00000553868 CABP1Q9NZU7 370 aa19.71■□□□□ 0.75
SHMT2-208ENST00000553868 CD2APQ9Y5K6 639 aa19.7■□□□□ 0.74
SHMT2-208ENST00000553868 TOMM70O94826 608 aa19.69■□□□□ 0.74
SHMT2-208ENST00000553868 KLRG1Q96E93 195 aa19.69■□□□□ 0.74
SHMT2-208ENST00000553868 IL2RBP14784 551 aa19.68■□□□□ 0.74
SHMT2-208ENST00000553868 PANK3Q9H999 370 aa19.68■□□□□ 0.74
SHMT2-208ENST00000553868 NLRP2Q9NX02 1062 aa19.68■□□□□ 0.74
SHMT2-208ENST00000553868 SLC34A2O95436 690 aa19.67■□□□□ 0.74
SHMT2-208ENST00000553868 JMYQ8N9B5 988 aa19.67■□□□□ 0.74
SHMT2-208ENST00000553868 KCNH5Q8NCM2 988 aa19.66■□□□□ 0.74
SHMT2-208ENST00000553868 TMC1Q8TDI8 760 aa19.66■□□□□ 0.74
SHMT2-208ENST00000553868 SYTL4Q96C24 671 aaPredicted RBP19.66■□□□□ 0.74
SHMT2-208ENST00000553868 IGSF1Q8N6C5 1336 aa19.66■□□□□ 0.74
SHMT2-208ENST00000553868 NFAT5O94916 1531 aa19.66■□□□□ 0.74
SHMT2-208ENST00000553868 DDX54Q8TDD1 881 aaKnown RBP19.65■□□□□ 0.74
SHMT2-208ENST00000553868 LY75O60449 1722 aa19.65■□□□□ 0.74
SHMT2-208ENST00000553868 PRIM1P49642 420 aaKnown RBP19.64■□□□□ 0.73
SHMT2-208ENST00000553868 NMRK2Q9NPI5 230 aa19.64■□□□□ 0.73
SHMT2-208ENST00000553868 KNSTRNQ9Y448 316 aa19.64■□□□□ 0.73
SHMT2-208ENST00000553868 KTN1Q86UP2 1357 aaKnown RBP19.64■□□□□ 0.73
SHMT2-208ENST00000553868 CCNL1Q9UK58 526 aaPredicted RBP19.63■□□□□ 0.73
SHMT2-208ENST00000553868 ERBB3P21860 1342 aa19.62■□□□□ 0.73
SHMT2-208ENST00000553868 TTC21BQ7Z4L5 1316 aa19.62■□□□□ 0.73
SHMT2-208ENST00000553868 NSD2O96028 1365 aa19.61■□□□□ 0.73
SHMT2-208ENST00000553868 ANKRD36BQ8N2N9 1353 aa19.61■□□□□ 0.73
SHMT2-208ENST00000553868 PER1O15534 1290 aaPredicted RBP19.61■□□□□ 0.73
SHMT2-208ENST00000553868 SLC12A5Q9H2X9 1139 aa19.61■□□□□ 0.73
SHMT2-208ENST00000553868 TERF2IPQ9NYB0 399 aa19.61■□□□□ 0.73
SHMT2-208ENST00000553868 CCER2I3L3R5 266 aa19.6■□□□□ 0.73
SHMT2-208ENST00000553868 PRKRIP1Q9H875 184 aaPredicted RBP19.6■□□□□ 0.73
SHMT2-208ENST00000553868 DOT1LQ8TEK3 1739 aa19.59■□□□□ 0.73
SHMT2-208ENST00000553868 HDGFL2Q7Z4V5 671 aaPredicted RBP19.59■□□□□ 0.73
SHMT2-208ENST00000553868 NPC1L1Q9UHC9 1359 aa19.58■□□□□ 0.73
SHMT2-208ENST00000553868 RALBP1Q15311 655 aa19.58■□□□□ 0.72
SHMT2-208ENST00000553868 SMIM5Q71RC9 77 aa19.56■□□□□ 0.72
SHMT2-208ENST00000553868 ANKRD24Q8TF21 1146 aa19.56■□□□□ 0.72
SHMT2-208ENST00000553868 RBM46Q8TBY0 533 aaKnown RBP19.55■□□□□ 0.72
SHMT2-208ENST00000553868 CICQ96RK0 1608 aaPredicted RBP19.54■□□□□ 0.72
SHMT2-208ENST00000553868 NSD3Q9BZ95 1437 aa19.54■□□□□ 0.72
SHMT2-208ENST00000553868 AMIGO3Q86WK7 504 aa19.54■□□□□ 0.72
SHMT2-208ENST00000553868 C5P01031 1676 aa19.52■□□□□ 0.72
SHMT2-208ENST00000553868 CGNL1Q0VF96 1302 aa19.52■□□□□ 0.72
SHMT2-208ENST00000553868 LTN1O94822 1766 aa19.52■□□□□ 0.72
SHMT2-208ENST00000553868 HSPA1AP0DMV8 641 aaKnown RBP19.52■□□□□ 0.72
SHMT2-208ENST00000553868 HSPA1BP0DMV9 641 aaKnown RBP19.52■□□□□ 0.72
SHMT2-208ENST00000553868 AMER1Q5JTC6 1135 aaPredicted RBP19.52■□□□□ 0.72
SHMT2-208ENST00000553868 CARD14Q9BXL6 1004 aa19.52■□□□□ 0.72
SHMT2-208ENST00000553868 A0A1W2PP64 1363 aa19.52■□□□□ 0.72
SHMT2-208ENST00000553868 USP54Q70EL1 1684 aa19.5■□□□□ 0.71
SHMT2-208ENST00000553868 CC2D1BQ5T0F9 858 aaKnown RBP19.5■□□□□ 0.71
SHMT2-208ENST00000553868 C16orf71Q8IYS4 520 aaPredicted RBP19.5■□□□□ 0.71
SHMT2-208ENST00000553868 ZNF692Q9BU19 519 aaPredicted RBP19.5■□□□□ 0.71
SHMT2-208ENST00000553868 TTC21AQ8NDW8 1320 aa19.5■□□□□ 0.71
SHMT2-208ENST00000553868 MYBBP1AQ9BQG0 1328 aaKnown RBP19.5■□□□□ 0.71
SHMT2-208ENST00000553868 CNGB1Q14028 1251 aaPredicted RBP19.49■□□□□ 0.71
SHMT2-208ENST00000553868 CD163L1Q9NR16 1453 aa19.48■□□□□ 0.71
SHMT2-208ENST00000553868 PHF14O94880 888 aa19.47■□□□□ 0.71
SHMT2-208ENST00000553868 FSTL1Q12841 308 aa19.47■□□□□ 0.71
SHMT2-208ENST00000553868 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.47■□□□□ 0.71
SHMT2-208ENST00000553868 LTV1Q96GA3 475 aaPredicted RBP19.47■□□□□ 0.71
SHMT2-208ENST00000553868 TOGARAM1Q9Y4F4 1720 aa19.47■□□□□ 0.71
SHMT2-208ENST00000553868 TAF1LQ8IZX4 1826 aa19.46■□□□□ 0.71
SHMT2-208ENST00000553868 EDC4Q6P2E9 1401 aaKnown RBP19.46■□□□□ 0.71
SHMT2-208ENST00000553868 ARHGAP27Q6ZUM4 889 aa19.46■□□□□ 0.71
SHMT2-208ENST00000553868 FLAD1Q8NFF5 587 aa19.46■□□□□ 0.71
SHMT2-208ENST00000553868 BCS1LQ9Y276 419 aa19.46■□□□□ 0.71
SHMT2-208ENST00000553868 N4BP2Q86UW6 1770 aaPredicted RBP19.45■□□□□ 0.7
SHMT2-208ENST00000553868 NME9Q86XW9 330 aa19.44■□□□□ 0.7
SHMT2-208ENST00000553868 KCPQ6ZWJ8 1503 aa19.44■□□□□ 0.7
SHMT2-208ENST00000553868 PXDNLA1KZ92 1463 aa19.43■□□□□ 0.7
SHMT2-208ENST00000553868 KIAA1551Q9HCM1 1747 aa19.43■□□□□ 0.7
SHMT2-208ENST00000553868 MORC1Q86VD1 984 aa19.42■□□□□ 0.7
SHMT2-208ENST00000553868 RRAGCQ9HB90 399 aa19.42■□□□□ 0.7
SHMT2-208ENST00000553868 MRS2Q9HD23 443 aa19.42■□□□□ 0.7
SHMT2-208ENST00000553868 C4BP0C0L5 1744 aa19.42■□□□□ 0.7
SHMT2-208ENST00000553868 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.41■□□□□ 0.7
SHMT2-208ENST00000553868 A0A0G2JLW4 131 aa19.41■□□□□ 0.7
SHMT2-208ENST00000553868 C9orf131Q5VYM1 1079 aa19.41■□□□□ 0.7
SHMT2-208ENST00000553868 ZCRB1Q8TBF4 217 aaKnown RBP19.41■□□□□ 0.7
SHMT2-208ENST00000553868 AK7Q96M32 723 aa19.41■□□□□ 0.7
SHMT2-208ENST00000553868 UBR3Q6ZT12 1888 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms