RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 DHX9Q08211 1270 aaKnown RBP8.84□□□□□ -0.99
LIMA1-205ENST00000550592 KCNA1Q09470 495 aa8.84□□□□□ -0.99
LIMA1-205ENST00000550592 ZNF594Q96JF6 807 aaPredicted RBP8.84□□□□□ -0.99
LIMA1-205ENST00000550592 MRGPRX2Q96LB1 330 aa8.84□□□□□ -0.99
LIMA1-205ENST00000550592 PLA2G2EQ9NZK7 142 aa8.84□□□□□ -0.99
LIMA1-205ENST00000550592 KIAA1024Q9UPX6 916 aa8.84□□□□□ -0.99
LIMA1-205ENST00000550592 A0A0G2JS52 829 aa8.83□□□□□ -1
LIMA1-205ENST00000550592 ADH1CP00326 375 aa8.83□□□□□ -1
LIMA1-205ENST00000550592 MYCP01106 439 aaPredicted RBP8.83□□□□□ -1
LIMA1-205ENST00000550592 ERVK-9P63128 1117 aa8.83□□□□□ -1
LIMA1-205ENST00000550592 NR5A1Q13285 461 aa8.83□□□□□ -1
LIMA1-205ENST00000550592 CCDC102BQ68D86 513 aa8.83□□□□□ -1
LIMA1-205ENST00000550592 ZNF598Q86UK7 904 aaKnown RBP8.83□□□□□ -1
LIMA1-205ENST00000550592 TRIM52Q96A61 297 aa8.83□□□□□ -1
LIMA1-205ENST00000550592 TLL2Q9Y6L7 1015 aa8.83□□□□□ -1
LIMA1-205ENST00000550592 FSHRP23945 695 aa8.82□□□□□ -1
LIMA1-205ENST00000550592 SCTRP47872 440 aa8.82□□□□□ -1
LIMA1-205ENST00000550592 SEC13P55735 322 aa8.81□□□□□ -1
LIMA1-205ENST00000550592 SWI5Q1ZZU3 235 aa8.81□□□□□ -1
LIMA1-205ENST00000550592 CC2D2BQ6DHV5 1058 aa8.81□□□□□ -1
LIMA1-205ENST00000550592 B4GALNT3Q6L9W6 998 aa8.81□□□□□ -1
LIMA1-205ENST00000550592 CLP1Q92989 425 aaKnown RBP8.81□□□□□ -1
LIMA1-205ENST00000550592 ZNF697Q5TEC3 545 aa8.8□□□□□ -1
LIMA1-205ENST00000550592 CCDC116Q8IYX3 515 aa8.8□□□□□ -1
LIMA1-205ENST00000550592 TPCN2Q8NHX9 752 aa8.8□□□□□ -1
LIMA1-205ENST00000550592 TMPRSS4Q9NRS4 437 aa8.8□□□□□ -1
LIMA1-205ENST00000550592 SLAIN2Q9P270 581 aa8.8□□□□□ -1
LIMA1-205ENST00000550592 V9GY48 417 aaPredicted RBP8.8□□□□□ -1
LIMA1-205ENST00000550592 SSFA2P28290 1259 aa8.79□□□□□ -1
LIMA1-205ENST00000550592 PSME1Q06323 249 aa8.79□□□□□ -1
LIMA1-205ENST00000550592 PPP1R26Q5T8A7 1209 aaPredicted RBP8.79□□□□□ -1
LIMA1-205ENST00000550592 PHLDB3Q6NSJ2 640 aa8.79□□□□□ -1
LIMA1-205ENST00000550592 OSBPL3Q9H4L5 887 aa8.79□□□□□ -1
LIMA1-205ENST00000550592 PKD2L1Q9P0L9 805 aa8.79□□□□□ -1
LIMA1-205ENST00000550592 RBM19Q9Y4C8 960 aaKnown RBP8.79□□□□□ -1
LIMA1-205ENST00000550592 LILRA1O75019 489 aa8.78□□□□□ -1
LIMA1-205ENST00000550592 NR3C2P08235 984 aa8.78□□□□□ -1
LIMA1-205ENST00000550592 ZNF784Q8NCA9 323 aaPredicted RBP8.78□□□□□ -1
LIMA1-205ENST00000550592 ESF1Q9H501 851 aaKnown RBP8.78□□□□□ -1
LIMA1-205ENST00000550592 SFI1A8K8P3 1242 aa8.77□□□□□ -1.01
LIMA1-205ENST00000550592 M0R2N6 131 aa8.77□□□□□ -1.01
LIMA1-205ENST00000550592 MYT1Q01538 1121 aa8.77□□□□□ -1.01
LIMA1-205ENST00000550592 PRKD2Q9BZL6 878 aa8.77□□□□□ -1.01
LIMA1-205ENST00000550592 CYLDQ9NQC7 956 aa8.77□□□□□ -1.01
LIMA1-205ENST00000550592 SNIP1Q8TAD8 396 aaKnown RBP8.76□□□□□ -1.01
LIMA1-205ENST00000550592 GNEQ9Y223 722 aaKnown RBP8.76□□□□□ -1.01
LIMA1-205ENST00000550592 EMILIN1Q9Y6C2 1016 aa8.76□□□□□ -1.01
LIMA1-205ENST00000550592 WASLO00401 505 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-205ENST00000550592 ALDH1A1P00352 501 aa8.75□□□□□ -1.01
LIMA1-205ENST00000550592 ADD1P35611 737 aaKnown RBP8.75□□□□□ -1.01
LIMA1-205ENST00000550592 FOXC1Q12948 553 aa8.75□□□□□ -1.01
LIMA1-205ENST00000550592 GZF1Q9H116 711 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-205ENST00000550592 PGPEP1Q9NXJ5 209 aa8.75□□□□□ -1.01
LIMA1-205ENST00000550592 TMEM229AB2RXF0 380 aa8.74□□□□□ -1.01
LIMA1-205ENST00000550592 GDF9O60383 454 aa8.74□□□□□ -1.01
LIMA1-205ENST00000550592 ATP2B4P23634 1241 aa8.74□□□□□ -1.01
LIMA1-205ENST00000550592 SCNN1DP51172 638 aa8.74□□□□□ -1.01
LIMA1-205ENST00000550592 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.74□□□□□ -1.01
LIMA1-205ENST00000550592 C1orf216Q8TAB5 229 aa8.74□□□□□ -1.01
LIMA1-205ENST00000550592 NNTQ13423 1086 aa8.73□□□□□ -1.01
LIMA1-205ENST00000550592 OCLNQ16625 522 aa8.73□□□□□ -1.01
LIMA1-205ENST00000550592 CYP2U1Q7Z449 544 aa8.73□□□□□ -1.01
LIMA1-205ENST00000550592 TXNDC2Q86VQ3 553 aa8.73□□□□□ -1.01
LIMA1-205ENST00000550592 ZNF358Q9NW07 568 aa8.73□□□□□ -1.01
LIMA1-205ENST00000550592 WASF2Q9Y6W5 498 aa8.73□□□□□ -1.01
LIMA1-205ENST00000550592 IVNS1ABPQ9Y6Y0 642 aa8.73□□□□□ -1.01
LIMA1-205ENST00000550592 GNRH1P01148 92 aa8.72□□□□□ -1.01
LIMA1-205ENST00000550592 ARID4AP29374 1257 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-205ENST00000550592 TSEN2Q8NCE0 465 aaKnown RBP8.72□□□□□ -1.01
LIMA1-205ENST00000550592 HINFPQ9BQA5 517 aa8.72□□□□□ -1.01
LIMA1-205ENST00000550592 KLF16Q9BXK1 252 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-205ENST00000550592 BACH1O14867 736 aa8.71□□□□□ -1.02
LIMA1-205ENST00000550592 INHAP05111 366 aa8.71□□□□□ -1.02
LIMA1-205ENST00000550592 GDF10P55107 478 aa8.71□□□□□ -1.02
LIMA1-205ENST00000550592 CCER1Q8TC90 406 aaPredicted RBP8.71□□□□□ -1.02
LIMA1-205ENST00000550592 SLC4A9Q96Q91 983 aa8.71□□□□□ -1.02
LIMA1-205ENST00000550592 ETNK1Q9HBU6 452 aa8.71□□□□□ -1.02
LIMA1-205ENST00000550592 TOR4AQ9NXH8 423 aa8.71□□□□□ -1.02
LIMA1-205ENST00000550592 CXXC1Q9P0U4 656 aaPredicted RBP8.71□□□□□ -1.02
LIMA1-205ENST00000550592 CCDC9Q9Y3X0 531 aaKnown RBP8.71□□□□□ -1.02
LIMA1-205ENST00000550592 J3QL48 77 aa8.7□□□□□ -1.02
LIMA1-205ENST00000550592 PRMT3O60678 531 aa8.7□□□□□ -1.02
LIMA1-205ENST00000550592 WEE1P30291 646 aa8.7□□□□□ -1.02
LIMA1-205ENST00000550592 TAS1R3Q7RTX0 852 aa8.7□□□□□ -1.02
LIMA1-205ENST00000550592 PRIMPOLQ96LW4 560 aa8.7□□□□□ -1.02
LIMA1-205ENST00000550592 TTC24A2A3L6 582 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-205ENST00000550592 STAU1O95793 577 aaKnown RBP8.69□□□□□ -1.02
LIMA1-205ENST00000550592 PRR20EP86478 221 aa8.69□□□□□ -1.02
LIMA1-205ENST00000550592 PRR20CP86479 221 aa8.69□□□□□ -1.02
LIMA1-205ENST00000550592 PRR20DP86480 221 aa8.69□□□□□ -1.02
LIMA1-205ENST00000550592 PRR20BP86481 221 aa8.69□□□□□ -1.02
LIMA1-205ENST00000550592 PRR20AP86496 221 aa8.69□□□□□ -1.02
LIMA1-205ENST00000550592 ESCO1Q5FWF5 840 aa8.69□□□□□ -1.02
LIMA1-205ENST00000550592 Q6ZVU0 165 aa8.69□□□□□ -1.02
LIMA1-205ENST00000550592 CYP4X1Q8N118 509 aa8.69□□□□□ -1.02
LIMA1-205ENST00000550592 TMCO4Q5TGY1 634 aa8.68□□□□□ -1.02
LIMA1-205ENST00000550592 TRIM67Q6ZTA4 783 aa8.68□□□□□ -1.02
LIMA1-205ENST00000550592 KDF1Q8NAX2 398 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-205ENST00000550592 XAGE2Q96GT9 111 aa8.68□□□□□ -1.02
LIMA1-205ENST00000550592 ADH1AP07327 375 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms