RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 APBA3O96018 575 aa35.1■■■■□ 3.21
CPSF6-205ENST00000550075 NHSQ6T4R5 1651 aa35.1■■■■□ 3.21
CPSF6-205ENST00000550075 PKD1L3Q7Z443 1732 aa35.09■■■■□ 3.21
CPSF6-205ENST00000550075 PLEKHG2Q9H7P9 1386 aa35.09■■■■□ 3.21
CPSF6-205ENST00000550075 BCL11BQ9C0K0 894 aaPredicted RBP35.08■■■■□ 3.21
CPSF6-205ENST00000550075 PARD3Q8TEW0 1356 aa35.08■■■■□ 3.21
CPSF6-205ENST00000550075 PCDH11XQ9BZA7 1347 aa35.07■■■■□ 3.21
CPSF6-205ENST00000550075 PCDH11YQ9BZA8 1340 aa35.07■■■■□ 3.21
CPSF6-205ENST00000550075 EN1Q05925 392 aaPredicted RBP35.04■■■■□ 3.2
CPSF6-205ENST00000550075 RGPD3A6NKT7 1758 aaPredicted RBP35.04■■■■□ 3.2
CPSF6-205ENST00000550075 RGPD4Q7Z3J3 1758 aa35.04■■■■□ 3.2
CPSF6-205ENST00000550075 SPG7Q9UQ90 795 aa35.02■■■■□ 3.2
CPSF6-205ENST00000550075 KAT6BQ8WYB5 2073 aa35.01■■■■□ 3.2
CPSF6-205ENST00000550075 IL13P35225 146 aa35.01■■■■□ 3.2
CPSF6-205ENST00000550075 DDX10Q13206 875 aaKnown RBP35■■■■□ 3.19
CPSF6-205ENST00000550075 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP35■■■■□ 3.194e-11■■■■□ 25
CPSF6-205ENST00000550075 DOT1LQ8TEK3 1739 aa35■■■■□ 3.19
CPSF6-205ENST00000550075 DIAPH1O60610 1272 aaKnown RBP34.99■■■■□ 3.19
CPSF6-205ENST00000550075 ACSBG1Q96GR2 724 aa34.99■■■■□ 3.19
CPSF6-205ENST00000550075 CFAP53Q96M91 514 aa34.98■■■■□ 3.19
CPSF6-205ENST00000550075 CAMKK2Q96RR4 588 aa34.97■■■■□ 3.19
CPSF6-205ENST00000550075 RREB1Q92766 1687 aa34.97■■■■□ 3.19
CPSF6-205ENST00000550075 COL3A1P02461 1466 aaPredicted RBP34.97■■■■□ 3.19
CPSF6-205ENST00000550075 EZH2Q15910 746 aaKnown RBP34.95■■■■□ 3.19
CPSF6-205ENST00000550075 KDRP35968 1356 aa34.95■■■■□ 3.19
CPSF6-205ENST00000550075 PPP2R1AP30153 589 aa34.94■■■■□ 3.18
CPSF6-205ENST00000550075 BTAF1O14981 1849 aa34.94■■■■□ 3.18
CPSF6-205ENST00000550075 PLSCR1O15162 318 aa34.93■■■■□ 3.18
CPSF6-205ENST00000550075 KCNQ2O43526 872 aa34.93■■■■□ 3.18
CPSF6-205ENST00000550075 SULT6B1Q6IMI4 303 aa34.93■■■■□ 3.18
CPSF6-205ENST00000550075 PTF1AQ7RTS3 328 aa34.92■■■■□ 3.18
CPSF6-205ENST00000550075 CYP27B1O15528 508 aa34.91■■■■□ 3.18
CPSF6-205ENST00000550075 AEBP1Q8IUX7 1158 aa34.91■■■■□ 3.18
CPSF6-205ENST00000550075 NUP188Q5SRE5 1749 aa34.89■■■■□ 3.18
CPSF6-205ENST00000550075 PLEKHO1Q53GL0 409 aaPredicted RBP34.89■■■■□ 3.18
CPSF6-205ENST00000550075 SYTL4Q96C24 671 aaPredicted RBP34.89■■■■□ 3.18
CPSF6-205ENST00000550075 AMOTQ4VCS5 1084 aa34.88■■■■□ 3.17
CPSF6-205ENST00000550075 IFNL2Q8IZJ0 200 aa34.87■■■■□ 3.17
CPSF6-205ENST00000550075 PRIM1P49642 420 aaKnown RBP34.85■■■■□ 3.17
CPSF6-205ENST00000550075 RALBP1Q15311 655 aa34.85■■■■□ 3.17
CPSF6-205ENST00000550075 U2SURPO15042 1029 aaKnown RBP34.84■■■■□ 3.17
CPSF6-205ENST00000550075 NUDCQ9Y266 331 aa34.84■■■■□ 3.17
CPSF6-205ENST00000550075 PHKG2P15735 406 aa34.83■■■■□ 3.17
CPSF6-205ENST00000550075 NKX1-1Q15270 411 aaPredicted RBP34.83■■■■□ 3.17
CPSF6-205ENST00000550075 TOGARAM1Q9Y4F4 1720 aa34.83■■■■□ 3.17
CPSF6-205ENST00000550075 HMOX1P09601 288 aa34.82■■■■□ 3.16
CPSF6-205ENST00000550075 ZNF530Q6P9A1 599 aaPredicted RBP34.82■■■■□ 3.16
CPSF6-205ENST00000550075 ZNF316A6NFI3 1004 aaPredicted RBP34.81■■■■□ 3.16
CPSF6-205ENST00000550075 HSP90AB1P08238 724 aaKnown RBP34.8■■■■□ 3.16
CPSF6-205ENST00000550075 NBPF14Q5TI25 921 aa34.79■■■■□ 3.16
CPSF6-205ENST00000550075 ITGB4P16144 1822 aa34.78■■■■□ 3.16
CPSF6-205ENST00000550075 C1orf141Q5JVX7 400 aa34.78■■■■□ 3.16
CPSF6-205ENST00000550075 TXNRD1Q16881 649 aa34.77■■■■□ 3.16
CPSF6-205ENST00000550075 MPRIPQ6WCQ1 1025 aa34.72■■■■□ 3.15
CPSF6-205ENST00000550075 DCAF5Q96JK2 942 aa34.72■■■■□ 3.15
CPSF6-205ENST00000550075 LY75O60449 1722 aa34.71■■■■□ 3.15
CPSF6-205ENST00000550075 MYBBP1AQ9BQG0 1328 aaKnown RBP34.71■■■■□ 3.15
CPSF6-205ENST00000550075 PROM2Q8N271 834 aa34.7■■■■□ 3.15
CPSF6-205ENST00000550075 TMOD3Q9NYL9 352 aa34.7■■■■□ 3.15
CPSF6-205ENST00000550075 U2AF1L5P0DN76 240 aaPredicted RBP34.69■■■■□ 3.14
CPSF6-205ENST00000550075 U2AF1Q01081 240 aaKnown RBP eCLIP34.69■■■■□ 3.144e-7■■□□□ 13.8
CPSF6-205ENST00000550075 SLC27A3Q5K4L6 730 aa34.69■■■■□ 3.14
CPSF6-205ENST00000550075 R3HDM1Q15032 1099 aaKnown RBP34.68■■■■□ 3.14
CPSF6-205ENST00000550075 PSDA5PKW4 1024 aaPredicted RBP34.67■■■■□ 3.14
CPSF6-205ENST00000550075 AKAP4Q5JQC9 854 aa34.67■■■■□ 3.14
CPSF6-205ENST00000550075 KDM6AO15550 1401 aaPredicted RBP34.66■■■■□ 3.14
CPSF6-205ENST00000550075 ERVV-2B6SEH9 535 aa34.66■■■■□ 3.14
CPSF6-205ENST00000550075 SMARCC1Q92922 1105 aaPredicted RBP34.66■■■■□ 3.14
CPSF6-205ENST00000550075 PIGBQ92521 554 aa34.64■■■■□ 3.14
CPSF6-205ENST00000550075 SCN11AQ9UI33 1791 aa34.64■■■■□ 3.14
CPSF6-205ENST00000550075 PALLDQ8WX93 1383 aa34.63■■■■□ 3.13
CPSF6-205ENST00000550075 PAPPAQ13219 1627 aa34.63■■■■□ 3.13
CPSF6-205ENST00000550075 GAS2L2Q8NHY3 880 aa34.63■■■■□ 3.13
CPSF6-205ENST00000550075 RSPH6AQ9H0K4 717 aa34.63■■■■□ 3.13
CPSF6-205ENST00000550075 STK32BQ9NY57 414 aa34.63■■■■□ 3.13
CPSF6-205ENST00000550075 PRKAR2BP31323 418 aa34.62■■■■□ 3.13
CPSF6-205ENST00000550075 FCHSD2O94868 740 aa34.61■■■■□ 3.13
CPSF6-205ENST00000550075 MTHFSDQ2M296 383 aaKnown RBP34.61■■■■□ 3.13
CPSF6-205ENST00000550075 PRKRIP1Q9H875 184 aaPredicted RBP34.61■■■■□ 3.13
CPSF6-205ENST00000550075 HMGB2P26583 209 aaKnown RBP34.6■■■■□ 3.13
CPSF6-205ENST00000550075 ANO8Q9HCE9 1232 aaPredicted RBP34.6■■■■□ 3.13
CPSF6-205ENST00000550075 CCNL1Q9UK58 526 aaPredicted RBP34.6■■■■□ 3.13
CPSF6-205ENST00000550075 CABP4P57796 275 aa34.59■■■■□ 3.13
CPSF6-205ENST00000550075 VIRMAQ69YN4 1812 aaKnown RBP34.58■■■■□ 3.13
CPSF6-205ENST00000550075 LRRC4BQ9NT99 713 aa34.57■■■■□ 3.12
CPSF6-205ENST00000550075 NEFMP07197 916 aa34.56■■■■□ 3.12
CPSF6-205ENST00000550075 MAP3K5Q99683 1374 aa34.56■■■■□ 3.12
CPSF6-205ENST00000550075 ADAMTS7Q9UKP4 1686 aa34.54■■■■□ 3.12
CPSF6-205ENST00000550075 SLC15A2Q16348 729 aa34.54■■■■□ 3.12
CPSF6-205ENST00000550075 MRC1P22897 1456 aa34.53■■■■□ 3.12
CPSF6-205ENST00000550075 C5P01031 1676 aa34.53■■■■□ 3.12
CPSF6-205ENST00000550075 PNNQ9H307 717 aaKnown RBP34.52■■■■□ 3.12
CPSF6-205ENST00000550075 GNAT3A8MTJ3 354 aa34.51■■■■□ 3.12
CPSF6-205ENST00000550075 RNMTO43148 476 aaKnown RBP34.51■■■■□ 3.12
CPSF6-205ENST00000550075 ASAP1Q9ULH1 1129 aa34.5■■■■□ 3.11
CPSF6-205ENST00000550075 PHACTR3Q96KR7 559 aa34.49■■■■□ 3.11
CPSF6-205ENST00000550075 TAF1LQ8IZX4 1826 aa34.48■■■■□ 3.11
CPSF6-205ENST00000550075 LRP5O75197 1615 aa34.48■■■■□ 3.11
CPSF6-205ENST00000550075 KCNQ4P56696 695 aa34.48■■■■□ 3.11
CPSF6-205ENST00000550075 SLC52A2Q9HAB3 445 aa34.48■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms