RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 NLGN2Q8NFZ4 835 aa21.92■■□□□ 1.1
CHMP1A-206ENST00000549139 TMC1Q8TDI8 760 aa21.92■■□□□ 1.1
CHMP1A-206ENST00000549139 SLC12A5Q9H2X9 1139 aa21.92■■□□□ 1.1
CHMP1A-206ENST00000549139 KLHL34Q8N239 644 aa21.9■■□□□ 1.1
CHMP1A-206ENST00000549139 LY75O60449 1722 aa21.89■■□□□ 1.1
CHMP1A-206ENST00000549139 KCNQ4P56696 695 aa21.89■■□□□ 1.09
CHMP1A-206ENST00000549139 IFFO2Q5TF58 517 aa21.89■■□□□ 1.09
CHMP1A-206ENST00000549139 DDX54Q8TDD1 881 aaKnown RBP21.89■■□□□ 1.09
CHMP1A-206ENST00000549139 TFCP2L1Q9NZI6 479 aa21.89■■□□□ 1.09
CHMP1A-206ENST00000549139 NSD2O96028 1365 aa21.88■■□□□ 1.09
CHMP1A-206ENST00000549139 HSPA5P11021 654 aaKnown RBP21.88■■□□□ 1.09
CHMP1A-206ENST00000549139 HDGFL2Q7Z4V5 671 aaPredicted RBP21.88■■□□□ 1.09
CHMP1A-206ENST00000549139 IP6K1Q92551 441 aa21.88■■□□□ 1.09
CHMP1A-206ENST00000549139 ANKRD36BQ8N2N9 1353 aa21.87■■□□□ 1.09
CHMP1A-206ENST00000549139 PRIM1P49642 420 aaKnown RBP21.87■■□□□ 1.09
CHMP1A-206ENST00000549139 PELP1Q8IZL8 1130 aaKnown RBP21.87■■□□□ 1.09
CHMP1A-206ENST00000549139 TERF2IPQ9NYB0 399 aa21.87■■□□□ 1.09
CHMP1A-206ENST00000549139 EDC4Q6P2E9 1401 aaKnown RBP21.87■■□□□ 1.09
CHMP1A-206ENST00000549139 FAM208AQ9UK61 1670 aaKnown RBP21.86■■□□□ 1.09
CHMP1A-206ENST00000549139 YBX3P16989 372 aaKnown RBP eCLIP21.86■■□□□ 1.096e-9■■□□□ 14.5
CHMP1A-206ENST00000549139 DOT1LQ8TEK3 1739 aa21.85■■□□□ 1.09
CHMP1A-206ENST00000549139 GRIN3BO60391 1043 aa21.83■■□□□ 1.09
CHMP1A-206ENST00000549139 A0A1W2PP64 1363 aa21.83■■□□□ 1.08
CHMP1A-206ENST00000549139 SYTL4Q96C24 671 aaPredicted RBP21.82■■□□□ 1.08
CHMP1A-206ENST00000549139 LTV1Q96GA3 475 aaPredicted RBP21.82■■□□□ 1.08
CHMP1A-206ENST00000549139 COL23A1Q86Y22 540 aaPredicted RBP21.81■■□□□ 1.08
CHMP1A-206ENST00000549139 CCNL1Q9UK58 526 aaPredicted RBP21.8■■□□□ 1.08
CHMP1A-206ENST00000549139 RGPD2P0DJD1 1756 aa21.79■■□□□ 1.08
CHMP1A-206ENST00000549139 MEGF6O75095 1541 aa21.79■■□□□ 1.08
CHMP1A-206ENST00000549139 ZCRB1Q8TBF4 217 aaKnown RBP21.78■■□□□ 1.08
CHMP1A-206ENST00000549139 MAP3K19Q56UN5 1328 aa21.78■■□□□ 1.08
CHMP1A-206ENST00000549139 HOXC9P31274 260 aa21.77■■□□□ 1.08
CHMP1A-206ENST00000549139 ATP10DQ9P241 1426 aa21.77■■□□□ 1.08
CHMP1A-206ENST00000549139 FBLN1P23142 703 aa21.74■■□□□ 1.07
CHMP1A-206ENST00000549139 MSH5O43196 834 aa21.73■■□□□ 1.07
CHMP1A-206ENST00000549139 MSL1Q68DK7 614 aa21.73■■□□□ 1.07
CHMP1A-206ENST00000549139 CD2APQ9Y5K6 639 aa21.73■■□□□ 1.07
CHMP1A-206ENST00000549139 ADCY9O60503 1353 aa21.73■■□□□ 1.07
CHMP1A-206ENST00000549139 C5P01031 1676 aa21.72■■□□□ 1.07
CHMP1A-206ENST00000549139 COG3Q96JB2 828 aa21.71■■□□□ 1.07
CHMP1A-206ENST00000549139 POLR3GLQ9BT43 218 aa21.71■■□□□ 1.07
CHMP1A-206ENST00000549139 TAF1LQ8IZX4 1826 aa21.71■■□□□ 1.07
CHMP1A-206ENST00000549139 AMPHP49418 695 aa21.7■■□□□ 1.06
CHMP1A-206ENST00000549139 NBPF6Q5VWK0 638 aa21.7■■□□□ 1.06
CHMP1A-206ENST00000549139 NBPF4Q96M43 638 aa21.7■■□□□ 1.06
CHMP1A-206ENST00000549139 CGNL1Q0VF96 1302 aa21.69■■□□□ 1.06
CHMP1A-206ENST00000549139 GPBP1L1Q9HC44 474 aaPredicted RBP21.68■■□□□ 1.06
CHMP1A-206ENST00000549139 RTL1A6NKG5 1358 aa21.68■■□□□ 1.06
CHMP1A-206ENST00000549139 KIF20BQ96Q89 1820 aa21.68■■□□□ 1.06
CHMP1A-206ENST00000549139 CARD14Q9BXL6 1004 aa21.67■■□□□ 1.06
CHMP1A-206ENST00000549139 FYB1O15117 783 aa21.66■■□□□ 1.06
CHMP1A-206ENST00000549139 HSPA6P17066 643 aa21.66■■□□□ 1.06
CHMP1A-206ENST00000549139 FLAD1Q8NFF5 587 aa21.66■■□□□ 1.06
CHMP1A-206ENST00000549139 AMIGO3Q86WK7 504 aa21.65■■□□□ 1.06
CHMP1A-206ENST00000549139 USHBP1Q8N6Y0 703 aa21.65■■□□□ 1.06
CHMP1A-206ENST00000549139 PALLDQ8WX93 1383 aa21.64■■□□□ 1.06
CHMP1A-206ENST00000549139 TOGARAM1Q9Y4F4 1720 aa21.64■■□□□ 1.06
CHMP1A-206ENST00000549139 RRS1Q15050 365 aaKnown RBP21.64■■□□□ 1.05
CHMP1A-206ENST00000549139 RAPGEF4Q8WZA2 1011 aa21.63■■□□□ 1.05
CHMP1A-206ENST00000549139 KIF7Q2M1P5 1343 aa21.62■■□□□ 1.05
CHMP1A-206ENST00000549139 HMGB2P26583 209 aaKnown RBP21.62■■□□□ 1.05
CHMP1A-206ENST00000549139 C4BP0C0L5 1744 aa21.62■■□□□ 1.05
CHMP1A-206ENST00000549139 UBR3Q6ZT12 1888 aa21.62■■□□□ 1.05
CHMP1A-206ENST00000549139 NSD3Q9BZ95 1437 aa21.62■■□□□ 1.05
CHMP1A-206ENST00000549139 PANK3Q9H999 370 aa21.61■■□□□ 1.05
CHMP1A-206ENST00000549139 PCDH11XQ9BZA7 1347 aa21.6■■□□□ 1.05
CHMP1A-206ENST00000549139 PCDH11YQ9BZA8 1340 aa21.6■■□□□ 1.05
CHMP1A-206ENST00000549139 ITGB4P16144 1822 aa21.6■■□□□ 1.05
CHMP1A-206ENST00000549139 CYP27B1O15528 508 aa21.6■■□□□ 1.05
CHMP1A-206ENST00000549139 TATP17735 454 aaPredicted RBP21.6■■□□□ 1.05
CHMP1A-206ENST00000549139 MPRIPQ6WCQ1 1025 aa21.6■■□□□ 1.05
CHMP1A-206ENST00000549139 ZNF526Q8TF50 670 aaPredicted RBP21.6■■□□□ 1.05
CHMP1A-206ENST00000549139 GGNBP2Q9H3C7 697 aa21.6■■□□□ 1.05
CHMP1A-206ENST00000549139 IGSF1Q8N6C5 1336 aa21.59■■□□□ 1.05
CHMP1A-206ENST00000549139 HSP90AB2PQ58FF8 381 aa21.58■■□□□ 1.05
CHMP1A-206ENST00000549139 SMIM5Q71RC9 77 aa21.58■■□□□ 1.05
CHMP1A-206ENST00000549139 INSRP06213 1382 aa21.58■■□□□ 1.04
CHMP1A-206ENST00000549139 MAP2P11137 1827 aaKnown RBP21.57■■□□□ 1.04
CHMP1A-206ENST00000549139 SMG6Q86US8 1419 aaKnown RBP21.57■■□□□ 1.04
CHMP1A-206ENST00000549139 KIF3CO14782 793 aa21.57■■□□□ 1.04
CHMP1A-206ENST00000549139 SMARCC1Q92922 1105 aaPredicted RBP21.56■■□□□ 1.04
CHMP1A-206ENST00000549139 AK7Q96M32 723 aa21.56■■□□□ 1.04
CHMP1A-206ENST00000549139 ANKRD26Q9UPS8 1709 aa21.55■■□□□ 1.04
CHMP1A-206ENST00000549139 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.55■■□□□ 1.04
CHMP1A-206ENST00000549139 WWC3Q9ULE0 1092 aa21.55■■□□□ 1.04
CHMP1A-206ENST00000549139 PIGBQ92521 554 aa21.54■■□□□ 1.04
CHMP1A-206ENST00000549139 PKD1L3Q7Z443 1732 aa21.54■■□□□ 1.04
CHMP1A-206ENST00000549139 CICQ96RK0 1608 aaPredicted RBP21.54■■□□□ 1.04
CHMP1A-206ENST00000549139 WASHC2AQ641Q2 1341 aa21.54■■□□□ 1.04
CHMP1A-206ENST00000549139 FLT4P35916 1363 aa21.53■■□□□ 1.04
CHMP1A-206ENST00000549139 KIF24Q5T7B8 1368 aa21.53■■□□□ 1.04
CHMP1A-206ENST00000549139 PHF14O94880 888 aa21.53■■□□□ 1.04
CHMP1A-206ENST00000549139 ZEB1P37275 1124 aaPredicted RBP21.53■■□□□ 1.04
CHMP1A-206ENST00000549139 NKX1-1Q15270 411 aaPredicted RBP21.53■■□□□ 1.04
CHMP1A-206ENST00000549139 SSFA2P28290 1259 aa21.52■■□□□ 1.04
CHMP1A-206ENST00000549139 NCAPD2Q15021 1401 aa21.52■■□□□ 1.04
CHMP1A-206ENST00000549139 LINC00116Q8NCU8 138 aa21.51■■□□□ 1.03
CHMP1A-206ENST00000549139 KNSTRNQ9Y448 316 aa21.5■■□□□ 1.03
CHMP1A-206ENST00000549139 LOC102724428A0A0B4J2F2 783 aa21.49■■□□□ 1.03
CHMP1A-206ENST00000549139 SIK1P57059 783 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms