RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 CAMKK2Q96RR4 588 aa16.2■□□□□ 0.18
YBX3-217ENST00000546164 RGPD2P0DJD1 1756 aa16.2■□□□□ 0.18
YBX3-217ENST00000546164 USHBP1Q8N6Y0 703 aa16.19■□□□□ 0.18
YBX3-217ENST00000546164 RAPGEF4Q8WZA2 1011 aa16.19■□□□□ 0.18
YBX3-217ENST00000546164 SBF2Q86WG5 1849 aa16.18■□□□□ 0.18
YBX3-217ENST00000546164 EIF4A2Q14240 407 aaKnown RBP16.18■□□□□ 0.18
YBX3-217ENST00000546164 ZCRB1Q8TBF4 217 aaKnown RBP16.18■□□□□ 0.18
YBX3-217ENST00000546164 CNKSR2Q8WXI2 1034 aa16.18■□□□□ 0.18
YBX3-217ENST00000546164 EYA1Q99502 592 aa16.18■□□□□ 0.18
YBX3-217ENST00000546164 TATP17735 454 aaPredicted RBP16.17■□□□□ 0.18
YBX3-217ENST00000546164 PLEKHG2Q9H7P9 1386 aa16.16■□□□□ 0.18
YBX3-217ENST00000546164 PLSCR1O15162 318 aa16.16■□□□□ 0.18
YBX3-217ENST00000546164 EZH2Q15910 746 aaKnown RBP16.16■□□□□ 0.18
YBX3-217ENST00000546164 SRCAPQ6ZRS2 3230 aa16.16■□□□□ 0.18
YBX3-217ENST00000546164 CC2D1BQ5T0F9 858 aaKnown RBP16.15■□□□□ 0.18
YBX3-217ENST00000546164 PTF1AQ7RTS3 328 aa16.15■□□□□ 0.18
YBX3-217ENST00000546164 DDX54Q8TDD1 881 aaKnown RBP16.15■□□□□ 0.18
YBX3-217ENST00000546164 IGSF1Q8N6C5 1336 aa16.15■□□□□ 0.18
YBX3-217ENST00000546164 RGPD3A6NKT7 1758 aaPredicted RBP16.14■□□□□ 0.17
YBX3-217ENST00000546164 RGPD4Q7Z3J3 1758 aa16.14■□□□□ 0.17
YBX3-217ENST00000546164 NHSQ6T4R5 1651 aa16.14■□□□□ 0.17
YBX3-217ENST00000546164 SHANK3Q9BYB0 1731 aa16.14■□□□□ 0.17
YBX3-217ENST00000546164 KCNQ2O43526 872 aa16.13■□□□□ 0.17
YBX3-217ENST00000546164 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.13■□□□□ 0.178e-7■□□□□ 11
YBX3-217ENST00000546164 PCDH11XQ9BZA7 1347 aa16.13■□□□□ 0.17
YBX3-217ENST00000546164 PCDH11YQ9BZA8 1340 aa16.13■□□□□ 0.17
YBX3-217ENST00000546164 MTHFSP49914 203 aa16.12■□□□□ 0.17
YBX3-217ENST00000546164 RREB1Q92766 1687 aa16.11■□□□□ 0.17
YBX3-217ENST00000546164 ZEB1P37275 1124 aaPredicted RBP16.11■□□□□ 0.17
YBX3-217ENST00000546164 ACSBG1Q96GR2 724 aa16.11■□□□□ 0.17
YBX3-217ENST00000546164 PKD1L3Q7Z443 1732 aa16.11■□□□□ 0.17
YBX3-217ENST00000546164 IL13P35225 146 aa16.1■□□□□ 0.17
YBX3-217ENST00000546164 CYP27B1O15528 508 aa16.09■□□□□ 0.17
YBX3-217ENST00000546164 SPG7Q9UQ90 795 aa16.09■□□□□ 0.17
YBX3-217ENST00000546164 KDRP35968 1356 aa16.09■□□□□ 0.17
YBX3-217ENST00000546164 PROM2Q8N271 834 aa16.08■□□□□ 0.16
YBX3-217ENST00000546164 PRIM1P49642 420 aaKnown RBP16.07■□□□□ 0.16
YBX3-217ENST00000546164 NKX1-1Q15270 411 aaPredicted RBP16.07■□□□□ 0.16
YBX3-217ENST00000546164 NUP188Q5SRE5 1749 aa16.07■□□□□ 0.16
YBX3-217ENST00000546164 TXNRD1Q16881 649 aa16.06■□□□□ 0.16
YBX3-217ENST00000546164 COL3A1P02461 1466 aaPredicted RBP16.05■□□□□ 0.16
YBX3-217ENST00000546164 NBPF14Q5TI25 921 aa16.05■□□□□ 0.16
YBX3-217ENST00000546164 AEBP1Q8IUX7 1158 aa16.05■□□□□ 0.16
YBX3-217ENST00000546164 RNF216Q9NWF9 866 aaPredicted RBP16.05■□□□□ 0.16
YBX3-217ENST00000546164 BTAF1O14981 1849 aa16.05■□□□□ 0.16
YBX3-217ENST00000546164 DOT1LQ8TEK3 1739 aa16.05■□□□□ 0.16
YBX3-217ENST00000546164 DIAPH1O60610 1272 aaKnown RBP16.04■□□□□ 0.16
YBX3-217ENST00000546164 R3HDM1Q15032 1099 aaKnown RBP16.04■□□□□ 0.16
YBX3-217ENST00000546164 SULT6B1Q6IMI4 303 aa16.04■□□□□ 0.16
YBX3-217ENST00000546164 IFNL2Q8IZJ0 200 aa16.04■□□□□ 0.16
YBX3-217ENST00000546164 PSDA5PKW4 1024 aaPredicted RBP16.03■□□□□ 0.16
YBX3-217ENST00000546164 PHKG2P15735 406 aa16.03■□□□□ 0.16
YBX3-217ENST00000546164 AMOTQ4VCS5 1084 aa16.03■□□□□ 0.16
YBX3-217ENST00000546164 PLEKHO1Q53GL0 409 aaPredicted RBP16.03■□□□□ 0.16
YBX3-217ENST00000546164 SYTL4Q96C24 671 aaPredicted RBP16.03■□□□□ 0.16
YBX3-217ENST00000546164 KAT6BQ8WYB5 2073 aa16.03■□□□□ 0.16
YBX3-217ENST00000546164 CNGB1Q14028 1251 aaPredicted RBP16.02■□□□□ 0.16
YBX3-217ENST00000546164 PPP2R1AP30153 589 aa16.01■□□□□ 0.15
YBX3-217ENST00000546164 SLC27A3Q5K4L6 730 aa16.01■□□□□ 0.15
YBX3-217ENST00000546164 ANO8Q9HCE9 1232 aaPredicted RBP16.01■□□□□ 0.15
YBX3-217ENST00000546164 HSP90AB1P08238 724 aaKnown RBP16■□□□□ 0.15
YBX3-217ENST00000546164 TOGARAM1Q9Y4F4 1720 aa15.99■□□□□ 0.15
YBX3-217ENST00000546164 CFAP53Q96M91 514 aa15.99■□□□□ 0.15
YBX3-217ENST00000546164 PAPPAQ13219 1627 aa15.98■□□□□ 0.15
YBX3-217ENST00000546164 ZNF530Q6P9A1 599 aaPredicted RBP15.98■□□□□ 0.15
YBX3-217ENST00000546164 MPRIPQ6WCQ1 1025 aa15.98■□□□□ 0.15
YBX3-217ENST00000546164 DCAF5Q96JK2 942 aa15.98■□□□□ 0.15
YBX3-217ENST00000546164 LRRC4BQ9NT99 713 aa15.98■□□□□ 0.15
YBX3-217ENST00000546164 HMOX1P09601 288 aa15.97■□□□□ 0.15
YBX3-217ENST00000546164 DDX10Q13206 875 aaKnown RBP15.97■□□□□ 0.15
YBX3-217ENST00000546164 ERVV-2B6SEH9 535 aa15.96■□□□□ 0.15
YBX3-217ENST00000546164 SLC15A2Q16348 729 aa15.96■□□□□ 0.15
YBX3-217ENST00000546164 PIGBQ92521 554 aa15.96■□□□□ 0.15
YBX3-217ENST00000546164 SMARCC1Q92922 1105 aaPredicted RBP15.96■□□□□ 0.15
YBX3-217ENST00000546164 STK32BQ9NY57 414 aa15.96■□□□□ 0.15
YBX3-217ENST00000546164 LY75O60449 1722 aa15.96■□□□□ 0.15
YBX3-217ENST00000546164 KDM6AO15550 1401 aaPredicted RBP15.95■□□□□ 0.14
YBX3-217ENST00000546164 LRP5O75197 1615 aa15.95■□□□□ 0.14
YBX3-217ENST00000546164 C1orf141Q5JVX7 400 aa15.95■□□□□ 0.14
YBX3-217ENST00000546164 TMOD3Q9NYL9 352 aa15.95■□□□□ 0.14
YBX3-217ENST00000546164 PALLDQ8WX93 1383 aa15.95■□□□□ 0.14
YBX3-217ENST00000546164 ITGB4P16144 1822 aa15.94■□□□□ 0.14
YBX3-217ENST00000546164 U2SURPO15042 1029 aaKnown RBP15.94■□□□□ 0.14
YBX3-217ENST00000546164 RALBP1Q15311 655 aa15.94■□□□□ 0.14
YBX3-217ENST00000546164 NUDCQ9Y266 331 aa15.94■□□□□ 0.14
YBX3-217ENST00000546164 HMGB2P26583 209 aaKnown RBP15.93■□□□□ 0.14
YBX3-217ENST00000546164 AKAP4Q5JQC9 854 aa15.93■□□□□ 0.14
YBX3-217ENST00000546164 AKT1S1Q96B36 256 aa15.93■□□□□ 0.14
YBX3-217ENST00000546164 CCNL1Q9UK58 526 aaPredicted RBP15.93■□□□□ 0.14
YBX3-217ENST00000546164 ZNF827Q17R98 1081 aa15.92■□□□□ 0.14
YBX3-217ENST00000546164 NCBP3Q53F19 620 aaKnown RBP15.92■□□□□ 0.14
YBX3-217ENST00000546164 POTEHQ6S545 545 aa15.92■□□□□ 0.14
YBX3-217ENST00000546164 MTHFSDQ2M296 383 aaKnown RBP15.91■□□□□ 0.14
YBX3-217ENST00000546164 RSPH6AQ9H0K4 717 aa15.91■□□□□ 0.14
YBX3-217ENST00000546164 CASZ1Q86V15 1759 aa15.9■□□□□ 0.14
YBX3-217ENST00000546164 KCNQ4P56696 695 aa15.9■□□□□ 0.14
YBX3-217ENST00000546164 ATG3Q9NT62 314 aa15.9■□□□□ 0.14
YBX3-217ENST00000546164 CABP4P57796 275 aa15.89■□□□□ 0.13
YBX3-217ENST00000546164 GAS2L2Q8NHY3 880 aa15.89■□□□□ 0.13
YBX3-217ENST00000546164 ASAP1Q9ULH1 1129 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms