RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 SLC4A2P04920 1241 aa19.59■□□□□ 0.73
LDLR-204ENST00000545707 MSH6P52701 1360 aa19.58■□□□□ 0.73
LDLR-204ENST00000545707 RGS12O14924 1447 aa19.58■□□□□ 0.73
LDLR-204ENST00000545707 MRE11P49959 708 aa19.58■□□□□ 0.72
LDLR-204ENST00000545707 F6X3S4 739 aa19.57■□□□□ 0.72
LDLR-204ENST00000545707 ATP10DQ9P241 1426 aa19.57■□□□□ 0.72
LDLR-204ENST00000545707 AGLP35573 1532 aa19.57■□□□□ 0.72
LDLR-204ENST00000545707 SDSP20132 328 aa19.57■□□□□ 0.72
LDLR-204ENST00000545707 SLC4A10Q6U841 1118 aa19.57■□□□□ 0.72
LDLR-204ENST00000545707 G2E3Q7L622 706 aa19.57■□□□□ 0.72
LDLR-204ENST00000545707 USP26Q9BXU7 913 aa19.56■□□□□ 0.72
LDLR-204ENST00000545707 RTL1A6NKG5 1358 aa19.56■□□□□ 0.72
LDLR-204ENST00000545707 RPAP2Q8IXW5 612 aaPredicted RBP19.55■□□□□ 0.72
LDLR-204ENST00000545707 KIF24Q5T7B8 1368 aa19.55■□□□□ 0.72
LDLR-204ENST00000545707 SIRT1Q96EB6 747 aa19.54■□□□□ 0.72
LDLR-204ENST00000545707 SLC26A8Q96RN1 970 aa19.54■□□□□ 0.72
LDLR-204ENST00000545707 DIP2BQ9P265 1576 aa19.54■□□□□ 0.72
LDLR-204ENST00000545707 MON2Q7Z3U7 1717 aa19.54■□□□□ 0.72
LDLR-204ENST00000545707 C3P01024 1663 aa19.53■□□□□ 0.72
LDLR-204ENST00000545707 MTHFSDQ2M296 383 aaKnown RBP19.53■□□□□ 0.72
LDLR-204ENST00000545707 HDGFP51858 240 aaKnown RBP19.53■□□□□ 0.72
LDLR-204ENST00000545707 MAP3K19Q56UN5 1328 aa19.52■□□□□ 0.72
LDLR-204ENST00000545707 LTKP29376 864 aa19.52■□□□□ 0.72
LDLR-204ENST00000545707 PKP1Q13835 747 aa19.52■□□□□ 0.71
LDLR-204ENST00000545707 TSHZ3Q63HK5 1081 aa19.52■□□□□ 0.71
LDLR-204ENST00000545707 TSPYL4Q9UJ04 414 aa19.52■□□□□ 0.71
LDLR-204ENST00000545707 TECPR2O15040 1411 aa19.51■□□□□ 0.71
LDLR-204ENST00000545707 RABEP1Q15276 862 aa19.51■□□□□ 0.71
LDLR-204ENST00000545707 NECTIN2Q92692 538 aa19.51■□□□□ 0.71
LDLR-204ENST00000545707 REREQ9P2R6 1566 aa19.5■□□□□ 0.71
LDLR-204ENST00000545707 BAG4O95429 457 aaKnown RBP19.5■□□□□ 0.71
LDLR-204ENST00000545707 PLPPR3Q6T4P5 718 aa19.5■□□□□ 0.71
LDLR-204ENST00000545707 CRB1P82279 1406 aa19.5■□□□□ 0.71
LDLR-204ENST00000545707 PTPRCP08575 1304 aa19.5■□□□□ 0.71
LDLR-204ENST00000545707 KIAA0232Q92628 1395 aa19.5■□□□□ 0.71
LDLR-204ENST00000545707 TMEM2Q9UHN6 1383 aa19.49■□□□□ 0.71
LDLR-204ENST00000545707 HAP1P54257 671 aaPredicted RBP19.49■□□□□ 0.71
LDLR-204ENST00000545707 OVOS2A0A0J9YW53 1432 aa19.49■□□□□ 0.71
LDLR-204ENST00000545707 OVOS2Q6IE36 1432 aa19.49■□□□□ 0.71
LDLR-204ENST00000545707 TNRQ92752 1358 aa19.49■□□□□ 0.71
LDLR-204ENST00000545707 PLEKHG3A1L390 1219 aa19.49■□□□□ 0.71
LDLR-204ENST00000545707 SKOR2Q2VWA4 1001 aaPredicted RBP19.49■□□□□ 0.71
LDLR-204ENST00000545707 RTF1Q92541 710 aaKnown RBP19.49■□□□□ 0.71
LDLR-204ENST00000545707 AKAP12Q02952 1782 aa19.48■□□□□ 0.71
LDLR-204ENST00000545707 ZGPATQ8N5A5 531 aaKnown RBP19.48■□□□□ 0.71
LDLR-204ENST00000545707 EXOC6BQ9Y2D4 811 aa19.48■□□□□ 0.71
LDLR-204ENST00000545707 USP6P35125 1406 aa19.48■□□□□ 0.71
LDLR-204ENST00000545707 DDX49Q9Y6V7 483 aaKnown RBP19.47■□□□□ 0.71
LDLR-204ENST00000545707 ITSN1Q15811 1721 aa19.47■□□□□ 0.71
LDLR-204ENST00000545707 MCTP1Q6DN14 999 aa19.47■□□□□ 0.71
LDLR-204ENST00000545707 ADAMTS13Q76LX8 1427 aa19.47■□□□□ 0.71
LDLR-204ENST00000545707 PEAK1Q9H792 1746 aa19.47■□□□□ 0.71
LDLR-204ENST00000545707 AK9Q5TCS8 1911 aa19.46■□□□□ 0.71
LDLR-204ENST00000545707 CEBPAP49715 358 aaPredicted RBP19.46■□□□□ 0.71
LDLR-204ENST00000545707 CHAMP1Q96JM3 812 aa19.46■□□□□ 0.71
LDLR-204ENST00000545707 NRKQ7Z2Y5 1582 aa19.46■□□□□ 0.71
LDLR-204ENST00000545707 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.45■□□□□ 0.7
LDLR-204ENST00000545707 NUTM2GQ5VZR2 741 aa19.45■□□□□ 0.7
LDLR-204ENST00000545707 EYA1Q99502 592 aa19.45■□□□□ 0.7
LDLR-204ENST00000545707 ERBB4Q15303 1308 aa19.45■□□□□ 0.7
LDLR-204ENST00000545707 GOLGA6L22H0YM25 854 aa19.45■□□□□ 0.7
LDLR-204ENST00000545707 CASC1Q6TDU7 716 aa19.45■□□□□ 0.7
LDLR-204ENST00000545707 NCLP19338 710 aaKnown RBP19.44■□□□□ 0.7
LDLR-204ENST00000545707 PDE1AP54750 535 aa19.44■□□□□ 0.7
LDLR-204ENST00000545707 AMPHP49418 695 aa19.44■□□□□ 0.7
LDLR-204ENST00000545707 HMMRO75330 724 aa19.43■□□□□ 0.7
LDLR-204ENST00000545707 CLCN1P35523 988 aa19.43■□□□□ 0.7
LDLR-204ENST00000545707 NGDNQ8NEJ9 315 aaKnown RBP19.43■□□□□ 0.7
LDLR-204ENST00000545707 RIMS1Q86UR5 1692 aaKnown RBP19.42■□□□□ 0.7
LDLR-204ENST00000545707 FOXD4L5Q5VV16 416 aaPredicted RBP19.42■□□□□ 0.7
LDLR-204ENST00000545707 FOXD4L4Q8WXT5 416 aaPredicted RBP19.42■□□□□ 0.7
LDLR-204ENST00000545707 ISY1Q9ULR0 285 aaKnown RBP19.42■□□□□ 0.7
LDLR-204ENST00000545707 USP31Q70CQ4 1352 aa19.42■□□□□ 0.7
LDLR-204ENST00000545707 ERC2O15083 957 aa19.42■□□□□ 0.7
LDLR-204ENST00000545707 AMOTL2Q9Y2J4 779 aa19.42■□□□□ 0.7
LDLR-204ENST00000545707 PNMA6EA0A0J9YXQ4 647 aa19.41■□□□□ 0.7
LDLR-204ENST00000545707 CCT4P50991 539 aaKnown RBP19.41■□□□□ 0.7
LDLR-204ENST00000545707 FKBP5Q13451 457 aaPredicted RBP19.41■□□□□ 0.7
LDLR-204ENST00000545707 CLEC17AQ6ZS10 378 aa19.41■□□□□ 0.7
LDLR-204ENST00000545707 PTPRUQ92729 1446 aa19.41■□□□□ 0.7
LDLR-204ENST00000545707 ST18O60284 1047 aa19.41■□□□□ 0.7
LDLR-204ENST00000545707 REC8O95072 547 aa19.41■□□□□ 0.7
LDLR-204ENST00000545707 GNAI2P04899 355 aa19.41■□□□□ 0.7
LDLR-204ENST00000545707 PTMSP20962 102 aa19.41■□□□□ 0.7
LDLR-204ENST00000545707 KLHL40Q2TBA0 621 aa19.41■□□□□ 0.7
LDLR-204ENST00000545707 NAP1L5Q96NT1 182 aaPredicted RBP19.41■□□□□ 0.7
LDLR-204ENST00000545707 ESPNB1AK53 854 aa19.4■□□□□ 0.7
LDLR-204ENST00000545707 CYP2E1P05181 493 aaPredicted RBP19.4■□□□□ 0.7
LDLR-204ENST00000545707 STK31Q9BXU1 1019 aa19.4■□□□□ 0.7
LDLR-204ENST00000545707 NUCB2P80303 420 aa19.4■□□□□ 0.7
LDLR-204ENST00000545707 CAVIN1Q6NZI2 390 aaKnown RBP19.4■□□□□ 0.7
LDLR-204ENST00000545707 LTV1Q96GA3 475 aaPredicted RBP19.4■□□□□ 0.7
LDLR-204ENST00000545707 ZDHHC9Q9Y397 364 aa19.4■□□□□ 0.7
LDLR-204ENST00000545707 FLIIQ13045 1269 aa19.39■□□□□ 0.69
LDLR-204ENST00000545707 TRIM44Q96DX7 344 aaPredicted RBP19.39■□□□□ 0.69
LDLR-204ENST00000545707 LMBRD1Q9NUN5 540 aa19.39■□□□□ 0.69
LDLR-204ENST00000545707 ARHGEF10O15013 1369 aa19.39■□□□□ 0.69
LDLR-204ENST00000545707 NEK4P51957 841 aa19.38■□□□□ 0.69
LDLR-204ENST00000545707 NOL8Q76FK4 1167 aaKnown RBP19.38■□□□□ 0.69
LDLR-204ENST00000545707 SSH2Q76I76 1423 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms