RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 USP26Q9BXU7 913 aa10.8□□□□□ -0.68
TDP1-204ENST00000545686 KIAA0232Q92628 1395 aa10.8□□□□□ -0.68
TDP1-204ENST00000545686 CPS1P31327 1500 aa10.79□□□□□ -0.68
TDP1-204ENST00000545686 HS1BP3Q53T59 392 aa10.79□□□□□ -0.68
TDP1-204ENST00000545686 TOPAZ1Q8N9V7 1692 aa10.79□□□□□ -0.68
TDP1-204ENST00000545686 FOXD4L1Q9NU39 408 aa10.79□□□□□ -0.68
TDP1-204ENST00000545686 EMILIN1Q9Y6C2 1016 aa10.79□□□□□ -0.68
TDP1-204ENST00000545686 ST18O60284 1047 aa10.78□□□□□ -0.68
TDP1-204ENST00000545686 ZSCAN30Q86W11 494 aa10.78□□□□□ -0.68
TDP1-204ENST00000545686 PTPRCP08575 1304 aa10.78□□□□□ -0.68
TDP1-204ENST00000545686 RTL1A6NKG5 1358 aa10.77□□□□□ -0.69
TDP1-204ENST00000545686 TECPR2O15040 1411 aa10.77□□□□□ -0.69
TDP1-204ENST00000545686 REC8O95072 547 aa10.77□□□□□ -0.69
TDP1-204ENST00000545686 HSP90AA2PQ14568 343 aaPredicted RBP10.77□□□□□ -0.69
TDP1-204ENST00000545686 PPP6R1Q9UPN7 881 aa10.77□□□□□ -0.69
TDP1-204ENST00000545686 ELL2O00472 640 aaPredicted RBP10.77□□□□□ -0.69
TDP1-204ENST00000545686 CEP85Q6P2H3 762 aa10.77□□□□□ -0.69
TDP1-204ENST00000545686 MSH6P52701 1360 aa10.76□□□□□ -0.69
TDP1-204ENST00000545686 WASLO00401 505 aaPredicted RBP10.76□□□□□ -0.69
TDP1-204ENST00000545686 TERF1P54274 439 aa10.76□□□□□ -0.69
TDP1-204ENST00000545686 COG3Q96JB2 828 aa10.76□□□□□ -0.69
TDP1-204ENST00000545686 LMBRD1Q9NUN5 540 aa10.76□□□□□ -0.69
TDP1-204ENST00000545686 NME9Q86XW9 330 aa10.76□□□□□ -0.69
TDP1-204ENST00000545686 FAM208AQ9UK61 1670 aaKnown RBP10.76□□□□□ -0.69
TDP1-204ENST00000545686 SDSP20132 328 aa10.75□□□□□ -0.69
TDP1-204ENST00000545686 FBLN1P23142 703 aa10.75□□□□□ -0.69
TDP1-204ENST00000545686 ZSCAN23Q3MJ62 389 aa10.75□□□□□ -0.69
TDP1-204ENST00000545686 MCTP1Q6DN14 999 aa10.75□□□□□ -0.69
TDP1-204ENST00000545686 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.75□□□□□ -0.69
TDP1-204ENST00000545686 SIRT1Q96EB6 747 aa10.75□□□□□ -0.69
TDP1-204ENST00000545686 OSBPL3Q9H4L5 887 aa10.75□□□□□ -0.69
TDP1-204ENST00000545686 STAG3Q9UJ98 1225 aa10.75□□□□□ -0.69
TDP1-204ENST00000545686 PEAK1Q9H792 1746 aa10.75□□□□□ -0.69
TDP1-204ENST00000545686 CHL1O00533 1208 aa10.74□□□□□ -0.69
TDP1-204ENST00000545686 HMMRO75330 724 aa10.74□□□□□ -0.69
TDP1-204ENST00000545686 OFD1O75665 1012 aa10.74□□□□□ -0.69
TDP1-204ENST00000545686 MSNP26038 577 aaKnown RBP10.74□□□□□ -0.69
TDP1-204ENST00000545686 WAPLQ7Z5K2 1190 aa10.74□□□□□ -0.69
TDP1-204ENST00000545686 PDLIM2Q96JY6 352 aa10.74□□□□□ -0.69
TDP1-204ENST00000545686 XRN1Q8IZH2 1706 aaKnown RBP10.74□□□□□ -0.69
TDP1-204ENST00000545686 ERC2O15083 957 aa10.74□□□□□ -0.69
TDP1-204ENST00000545686 FBXO31Q5XUX0 539 aaPredicted RBP10.74□□□□□ -0.69
TDP1-204ENST00000545686 LRRC37A3O60309 1634 aa10.74□□□□□ -0.69
TDP1-204ENST00000545686 ARHGEF10O15013 1369 aa10.73□□□□□ -0.69
TDP1-204ENST00000545686 FAM83GA6ND36 823 aa10.73□□□□□ -0.69
TDP1-204ENST00000545686 MCM2P49736 904 aa10.73□□□□□ -0.69
TDP1-204ENST00000545686 CAVIN1Q6NZI2 390 aaKnown RBP10.73□□□□□ -0.69
TDP1-204ENST00000545686 C16orf71Q8IYS4 520 aaPredicted RBP10.73□□□□□ -0.69
TDP1-204ENST00000545686 CCDC61Q9Y6R9 512 aa10.73□□□□□ -0.69
TDP1-204ENST00000545686 OVOS2A0A0J9YW53 1432 aa10.72□□□□□ -0.69
TDP1-204ENST00000545686 OVOS2Q6IE36 1432 aa10.72□□□□□ -0.69
TDP1-204ENST00000545686 SSH2Q76I76 1423 aa10.72□□□□□ -0.69
TDP1-204ENST00000545686 NUDT16Q96DE0 195 aaKnown RBP10.72□□□□□ -0.69
TDP1-204ENST00000545686 SENP3Q9H4L4 574 aaPredicted RBP10.72□□□□□ -0.69
TDP1-204ENST00000545686 MBD3O95983 291 aa10.72□□□□□ -0.69
TDP1-204ENST00000545686 OTUD7AQ8TE49 926 aaPredicted RBP10.72□□□□□ -0.69
TDP1-204ENST00000545686 CRB1P82279 1406 aa10.71□□□□□ -0.69
TDP1-204ENST00000545686 ZNF500O60304 480 aaPredicted RBP10.71□□□□□ -0.69
TDP1-204ENST00000545686 MCM5P33992 734 aa10.71□□□□□ -0.69
TDP1-204ENST00000545686 KIAA1211Q6ZU35 1233 aa10.71□□□□□ -0.69
TDP1-204ENST00000545686 OSCARQ8IYS5 282 aa10.71□□□□□ -0.69
TDP1-204ENST00000545686 NOL7Q9UMY1 257 aaKnown RBP10.71□□□□□ -0.69
TDP1-204ENST00000545686 DCTN1Q14203 1278 aa10.7□□□□□ -0.7
TDP1-204ENST00000545686 RRS1Q15050 365 aaKnown RBP10.7□□□□□ -0.7
TDP1-204ENST00000545686 LRSAM1Q6UWE0 723 aa10.7□□□□□ -0.7
TDP1-204ENST00000545686 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.7□□□□□ -0.7
TDP1-204ENST00000545686 ZDHHC9Q9Y397 364 aa10.7□□□□□ -0.7
TDP1-204ENST00000545686 CCT4P50991 539 aaKnown RBP10.7□□□□□ -0.7
TDP1-204ENST00000545686 PKP1Q13835 747 aa10.7□□□□□ -0.7
TDP1-204ENST00000545686 GPT2Q8TD30 523 aa10.7□□□□□ -0.7
TDP1-204ENST00000545686 IL17RAQ96F46 866 aa10.7□□□□□ -0.7
TDP1-204ENST00000545686 MEIS3Q99687 375 aa10.7□□□□□ -0.7
TDP1-204ENST00000545686 RBSNQ9H1K0 784 aa10.7□□□□□ -0.7
TDP1-204ENST00000545686 ZRANB1Q9UGI0 708 aa10.7□□□□□ -0.7
TDP1-204ENST00000545686 TTC21BQ7Z4L5 1316 aa10.7□□□□□ -0.7
TDP1-204ENST00000545686 TCHHQ07283 1943 aa10.7□□□□□ -0.7
TDP1-204ENST00000545686 NCLP19338 710 aaKnown RBP10.69□□□□□ -0.7
TDP1-204ENST00000545686 ANAPC15P60006 121 aa10.69□□□□□ -0.7
TDP1-204ENST00000545686 EIF4A2Q14240 407 aaKnown RBP10.69□□□□□ -0.7
TDP1-204ENST00000545686 ZGPATQ8N5A5 531 aaKnown RBP10.69□□□□□ -0.7
TDP1-204ENST00000545686 METP08581 1390 aa10.69□□□□□ -0.7
TDP1-204ENST00000545686 PRPF40AO75400 957 aaKnown RBP10.69□□□□□ -0.7
TDP1-204ENST00000545686 PDE1AP54750 535 aa10.69□□□□□ -0.7
TDP1-204ENST00000545686 PDCL3Q9H2J4 239 aa10.69□□□□□ -0.7
TDP1-204ENST00000545686 PXDNLA1KZ92 1463 aa10.69□□□□□ -0.7
TDP1-204ENST00000545686 RIMS1Q86UR5 1692 aaKnown RBP10.69□□□□□ -0.7
TDP1-204ENST00000545686 EPB41L2O43491 1005 aaKnown RBP10.68□□□□□ -0.7
TDP1-204ENST00000545686 SMARCA5O60264 1052 aaPredicted RBP10.68□□□□□ -0.7
TDP1-204ENST00000545686 MCCP23508 829 aa10.68□□□□□ -0.7
TDP1-204ENST00000545686 PRIM1P49642 420 aaKnown RBP10.68□□□□□ -0.7
TDP1-204ENST00000545686 CUL4AQ13619 759 aa10.68□□□□□ -0.7
TDP1-204ENST00000545686 SULT6B1Q6IMI4 303 aa10.68□□□□□ -0.7
TDP1-204ENST00000545686 INTS4Q96HW7 963 aaKnown RBP10.68□□□□□ -0.7
TDP1-204ENST00000545686 SALL3Q9BXA9 1300 aa10.68□□□□□ -0.7
TDP1-204ENST00000545686 USP31Q70CQ4 1352 aa10.68□□□□□ -0.7
TDP1-204ENST00000545686 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.68□□□□□ -0.7
TDP1-204ENST00000545686 UBR1Q8IWV7 1749 aa10.68□□□□□ -0.7
TDP1-204ENST00000545686 CSPP1Q1MSJ5 1256 aa10.67□□□□□ -0.7
TDP1-204ENST00000545686 AEBP1Q8IUX7 1158 aa10.67□□□□□ -0.7
TDP1-204ENST00000545686 ZKSCAN5Q9Y2L8 839 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms