RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 MSH5O43196 834 aa13.5□□□□□ -0.25
CHD4-212ENST00000545083 GPBP1L1Q9HC44 474 aaPredicted RBP13.5□□□□□ -0.25
CHD4-212ENST00000545083 LY75O60449 1722 aa13.5□□□□□ -0.25
CHD4-212ENST00000545083 ZNF526Q8TF50 670 aaPredicted RBP13.49□□□□□ -0.25
CHD4-212ENST00000545083 LTV1Q96GA3 475 aaPredicted RBP13.49□□□□□ -0.25
CHD4-212ENST00000545083 CCNL1Q9UK58 526 aaPredicted RBP13.49□□□□□ -0.25
CHD4-212ENST00000545083 DOT1LQ8TEK3 1739 aa13.48□□□□□ -0.25
CHD4-212ENST00000545083 IP6K1Q92551 441 aa13.48□□□□□ -0.25
CHD4-212ENST00000545083 ROCK2O75116 1388 aaKnown RBP13.47□□□□□ -0.25
CHD4-212ENST00000545083 CD2APQ9Y5K6 639 aa13.46□□□□□ -0.25
CHD4-212ENST00000545083 MEGF6O75095 1541 aa13.45□□□□□ -0.26
CHD4-212ENST00000545083 FAM208AQ9UK61 1670 aaKnown RBP13.45□□□□□ -0.26
CHD4-212ENST00000545083 FBLN1P23142 703 aa13.45□□□□□ -0.26
CHD4-212ENST00000545083 ZCRB1Q8TBF4 217 aaKnown RBP13.45□□□□□ -0.26
CHD4-212ENST00000545083 SLC12A5Q9H2X9 1139 aa13.45□□□□□ -0.26
CHD4-212ENST00000545083 EDC4Q6P2E9 1401 aaKnown RBP13.45□□□□□ -0.26
CHD4-212ENST00000545083 TMC1Q8TDI8 760 aa13.44□□□□□ -0.26
CHD4-212ENST00000545083 WWC3Q9ULE0 1092 aa13.44□□□□□ -0.26
CHD4-212ENST00000545083 A0A1W2PP64 1363 aa13.44□□□□□ -0.26
CHD4-212ENST00000545083 USP47Q96K76 1375 aa13.44□□□□□ -0.26
CHD4-212ENST00000545083 KIF3CO14782 793 aa13.43□□□□□ -0.26
CHD4-212ENST00000545083 HDGFL2Q7Z4V5 671 aaPredicted RBP13.43□□□□□ -0.26
CHD4-212ENST00000545083 AMIGO3Q86WK7 504 aa13.43□□□□□ -0.26
CHD4-212ENST00000545083 MAP3K19Q56UN5 1328 aa13.42□□□□□ -0.26
CHD4-212ENST00000545083 HOXC9P31274 260 aa13.42□□□□□ -0.26
CHD4-212ENST00000545083 SIN3AQ96ST3 1273 aa13.42□□□□□ -0.26
CHD4-212ENST00000545083 SMIM5Q71RC9 77 aa13.41□□□□□ -0.26
CHD4-212ENST00000545083 C5P01031 1676 aa13.4□□□□□ -0.26
CHD4-212ENST00000545083 IGSF1Q8N6C5 1336 aa13.4□□□□□ -0.26
CHD4-212ENST00000545083 RGPD2P0DJD1 1756 aa13.4□□□□□ -0.26
CHD4-212ENST00000545083 NBPF6Q5VWK0 638 aa13.39□□□□□ -0.27
CHD4-212ENST00000545083 USHBP1Q8N6Y0 703 aa13.39□□□□□ -0.27
CHD4-212ENST00000545083 NBPF4Q96M43 638 aa13.39□□□□□ -0.27
CHD4-212ENST00000545083 PALLDQ8WX93 1383 aa13.39□□□□□ -0.27
CHD4-212ENST00000545083 DNAJC5GQ8N7S2 189 aa13.38□□□□□ -0.27
CHD4-212ENST00000545083 FLAD1Q8NFF5 587 aa13.38□□□□□ -0.27
CHD4-212ENST00000545083 TERF2IPQ9NYB0 399 aa13.38□□□□□ -0.27
CHD4-212ENST00000545083 TOGARAM1Q9Y4F4 1720 aa13.38□□□□□ -0.27
CHD4-212ENST00000545083 AMPHP49418 695 aa13.37□□□□□ -0.27
CHD4-212ENST00000545083 TAF1LQ8IZX4 1826 aa13.36□□□□□ -0.27
CHD4-212ENST00000545083 PHF14O94880 888 aa13.36□□□□□ -0.27
CHD4-212ENST00000545083 APLP1P51693 650 aa13.36□□□□□ -0.27
CHD4-212ENST00000545083 NEUROD1Q13562 356 aa13.36□□□□□ -0.27
CHD4-212ENST00000545083 COG3Q96JB2 828 aa13.36□□□□□ -0.27
CHD4-212ENST00000545083 C4BP0C0L5 1744 aa13.36□□□□□ -0.27
CHD4-212ENST00000545083 RRS1Q15050 365 aaKnown RBP13.35□□□□□ -0.27
CHD4-212ENST00000545083 MPRIPQ6WCQ1 1025 aa13.35□□□□□ -0.27
CHD4-212ENST00000545083 AK7Q96M32 723 aa13.35□□□□□ -0.27
CHD4-212ENST00000545083 CARD11Q9BXL7 1154 aa13.35□□□□□ -0.27
CHD4-212ENST00000545083 CICQ96RK0 1608 aaPredicted RBP13.35□□□□□ -0.27
CHD4-212ENST00000545083 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.34□□□□□ -0.27
CHD4-212ENST00000545083 RAPGEF4Q8WZA2 1011 aa13.34□□□□□ -0.27
CHD4-212ENST00000545083 CGNL1Q0VF96 1302 aa13.34□□□□□ -0.27
CHD4-212ENST00000545083 RTL1A6NKG5 1358 aa13.33□□□□□ -0.27
CHD4-212ENST00000545083 CYP27B1O15528 508 aa13.33□□□□□ -0.28
CHD4-212ENST00000545083 TATP17735 454 aaPredicted RBP13.33□□□□□ -0.28
CHD4-212ENST00000545083 UBR3Q6ZT12 1888 aa13.33□□□□□ -0.28
CHD4-212ENST00000545083 PCDH11XQ9BZA7 1347 aa13.33□□□□□ -0.28
CHD4-212ENST00000545083 PCDH11YQ9BZA8 1340 aa13.33□□□□□ -0.28
CHD4-212ENST00000545083 TOMM70O94826 608 aa13.32□□□□□ -0.28
CHD4-212ENST00000545083 LINC00116Q8NCU8 138 aa13.32□□□□□ -0.28
CHD4-212ENST00000545083 PUS7Q96PZ0 661 aaKnown RBP13.32□□□□□ -0.28
CHD4-212ENST00000545083 PXDNLA1KZ92 1463 aa13.31□□□□□ -0.28
CHD4-212ENST00000545083 PIGBQ92521 554 aa13.31□□□□□ -0.28
CHD4-212ENST00000545083 NMRK2Q9NPI5 230 aa13.31□□□□□ -0.28
CHD4-212ENST00000545083 SSFA2P28290 1259 aa13.3□□□□□ -0.28
CHD4-212ENST00000545083 HTRA3P83110 453 aa13.3□□□□□ -0.28
CHD4-212ENST00000545083 HSP90AB2PQ58FF8 381 aa13.3□□□□□ -0.28
CHD4-212ENST00000545083 COL13A1Q5TAT6 717 aaPredicted RBP13.3□□□□□ -0.28
CHD4-212ENST00000545083 SMARCC1Q92922 1105 aaPredicted RBP13.3□□□□□ -0.28
CHD4-212ENST00000545083 HMGB2P26583 209 aaKnown RBP13.29□□□□□ -0.28
CHD4-212ENST00000545083 ITPK1Q13572 414 aa13.29□□□□□ -0.28
CHD4-212ENST00000545083 TESK2Q96S53 571 aa13.29□□□□□ -0.28
CHD4-212ENST00000545083 KIAA1551Q9HCM1 1747 aa13.29□□□□□ -0.28
CHD4-212ENST00000545083 MAP2P11137 1827 aaKnown RBP13.29□□□□□ -0.28
CHD4-212ENST00000545083 NSD3Q9BZ95 1437 aa13.29□□□□□ -0.28
CHD4-212ENST00000545083 ITGB4P16144 1822 aa13.28□□□□□ -0.28
CHD4-212ENST00000545083 LOC102724428A0A0B4J2F2 783 aa13.28□□□□□ -0.28
CHD4-212ENST00000545083 FYB1O15117 783 aa13.28□□□□□ -0.28
CHD4-212ENST00000545083 MMP10P09238 476 aa13.28□□□□□ -0.28
CHD4-212ENST00000545083 SIK1P57059 783 aa13.28□□□□□ -0.28
CHD4-212ENST00000545083 GGNBP2Q9H3C7 697 aa13.28□□□□□ -0.28
CHD4-212ENST00000545083 BCS1LQ9Y276 419 aa13.28□□□□□ -0.28
CHD4-212ENST00000545083 INSRP06213 1382 aa13.28□□□□□ -0.28
CHD4-212ENST00000545083 SMG6Q86US8 1419 aaKnown RBP13.28□□□□□ -0.28
CHD4-212ENST00000545083 A0A0G2JLW4 131 aa13.27□□□□□ -0.29
CHD4-212ENST00000545083 GNPATO15228 680 aa13.27□□□□□ -0.29
CHD4-212ENST00000545083 ARHGAP27Q6ZUM4 889 aa13.26□□□□□ -0.29
CHD4-212ENST00000545083 KLRG1Q96E93 195 aa13.26□□□□□ -0.29
CHD4-212ENST00000545083 WDR90Q96KV7 1748 aa13.26□□□□□ -0.29
CHD4-212ENST00000545083 KIF13BQ9NQT8 1826 aa13.25□□□□□ -0.29
CHD4-212ENST00000545083 N4BP2Q86UW6 1770 aaPredicted RBP13.25□□□□□ -0.29
CHD4-212ENST00000545083 C10orf71Q711Q0 1435 aa13.25□□□□□ -0.29
CHD4-212ENST00000545083 CAPN15O75808 1086 aa13.25□□□□□ -0.29
CHD4-212ENST00000545083 NKX1-1Q15270 411 aaPredicted RBP13.25□□□□□ -0.29
CHD4-212ENST00000545083 JMYQ8N9B5 988 aa13.25□□□□□ -0.29
CHD4-212ENST00000545083 ASAP1Q9ULH1 1129 aa13.25□□□□□ -0.29
CHD4-212ENST00000545083 PKD1L3Q7Z443 1732 aa13.25□□□□□ -0.29
CHD4-212ENST00000545083 PCNTO95613 3336 aa13.24□□□□□ -0.29
CHD4-212ENST00000545083 FLT4P35916 1363 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms