RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 EIF4A2Q14240 407 aaKnown RBP15.62■□□□□ 0.09
YBX3-216ENST00000544622 PROM2Q8N271 834 aa15.61■□□□□ 0.09
YBX3-216ENST00000544622 DDX54Q8TDD1 881 aaKnown RBP15.61■□□□□ 0.09
YBX3-216ENST00000544622 SHANK3Q9BYB0 1731 aa15.6■□□□□ 0.09
YBX3-216ENST00000544622 RAPGEF4Q8WZA2 1011 aa15.6■□□□□ 0.09
YBX3-216ENST00000544622 TATP17735 454 aaPredicted RBP15.59■□□□□ 0.09
YBX3-216ENST00000544622 RREB1Q92766 1687 aa15.59■□□□□ 0.09
YBX3-216ENST00000544622 IGSF1Q8N6C5 1336 aa15.59■□□□□ 0.09
YBX3-216ENST00000544622 RGPD3A6NKT7 1758 aaPredicted RBP15.59■□□□□ 0.09
YBX3-216ENST00000544622 RGPD4Q7Z3J3 1758 aa15.59■□□□□ 0.09
YBX3-216ENST00000544622 ACSBG1Q96GR2 724 aa15.58■□□□□ 0.08
YBX3-216ENST00000544622 NHSQ6T4R5 1651 aa15.57■□□□□ 0.08
YBX3-216ENST00000544622 CYP27B1O15528 508 aa15.57■□□□□ 0.08
YBX3-216ENST00000544622 CC2D1BQ5T0F9 858 aaKnown RBP15.57■□□□□ 0.08
YBX3-216ENST00000544622 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.57■□□□□ 0.085e-7■■□□□ 13
YBX3-216ENST00000544622 PLEKHG2Q9H7P9 1386 aa15.57■□□□□ 0.08
YBX3-216ENST00000544622 IL13P35225 146 aa15.56■□□□□ 0.08
YBX3-216ENST00000544622 NUP188Q5SRE5 1749 aa15.55■□□□□ 0.08
YBX3-216ENST00000544622 PCDH11XQ9BZA7 1347 aa15.55■□□□□ 0.08
YBX3-216ENST00000544622 PCDH11YQ9BZA8 1340 aa15.55■□□□□ 0.08
YBX3-216ENST00000544622 MTHFSP49914 203 aa15.55■□□□□ 0.08
YBX3-216ENST00000544622 NKX1-1Q15270 411 aaPredicted RBP15.55■□□□□ 0.08
YBX3-216ENST00000544622 PRIM1P49642 420 aaKnown RBP15.54■□□□□ 0.08
YBX3-216ENST00000544622 TXNRD1Q16881 649 aa15.54■□□□□ 0.08
YBX3-216ENST00000544622 PKD1L3Q7Z443 1732 aa15.54■□□□□ 0.08
YBX3-216ENST00000544622 PSDA5PKW4 1024 aaPredicted RBP15.53■□□□□ 0.08
YBX3-216ENST00000544622 R3HDM1Q15032 1099 aaKnown RBP15.53■□□□□ 0.08
YBX3-216ENST00000544622 KDRP35968 1356 aa15.52■□□□□ 0.08
YBX3-216ENST00000544622 SPG7Q9UQ90 795 aa15.52■□□□□ 0.08
YBX3-216ENST00000544622 NBPF14Q5TI25 921 aa15.51■□□□□ 0.07
YBX3-216ENST00000544622 BTAF1O14981 1849 aa15.5■□□□□ 0.07
YBX3-216ENST00000544622 ANO8Q9HCE9 1232 aaPredicted RBP15.5■□□□□ 0.07
YBX3-216ENST00000544622 DOT1LQ8TEK3 1739 aa15.49■□□□□ 0.07
YBX3-216ENST00000544622 PHKG2P15735 406 aa15.49■□□□□ 0.07
YBX3-216ENST00000544622 AEBP1Q8IUX7 1158 aa15.49■□□□□ 0.07
YBX3-216ENST00000544622 IFNL2Q8IZJ0 200 aa15.49■□□□□ 0.07
YBX3-216ENST00000544622 LRRC4BQ9NT99 713 aa15.49■□□□□ 0.07
YBX3-216ENST00000544622 SULT6B1Q6IMI4 303 aa15.48■□□□□ 0.07
YBX3-216ENST00000544622 SYTL4Q96C24 671 aaPredicted RBP15.48■□□□□ 0.07
YBX3-216ENST00000544622 COL3A1P02461 1466 aaPredicted RBP15.47■□□□□ 0.07
YBX3-216ENST00000544622 DIAPH1O60610 1272 aaKnown RBP15.47■□□□□ 0.07
YBX3-216ENST00000544622 AMOTQ4VCS5 1084 aa15.47■□□□□ 0.07
YBX3-216ENST00000544622 SLC27A3Q5K4L6 730 aa15.46■□□□□ 0.07
YBX3-216ENST00000544622 PAPPAQ13219 1627 aa15.46■□□□□ 0.06
YBX3-216ENST00000544622 TOGARAM1Q9Y4F4 1720 aa15.46■□□□□ 0.06
YBX3-216ENST00000544622 PPP2R1AP30153 589 aa15.45■□□□□ 0.06
YBX3-216ENST00000544622 CNGB1Q14028 1251 aaPredicted RBP15.45■□□□□ 0.06
YBX3-216ENST00000544622 SLC15A2Q16348 729 aa15.45■□□□□ 0.06
YBX3-216ENST00000544622 PLEKHO1Q53GL0 409 aaPredicted RBP15.45■□□□□ 0.06
YBX3-216ENST00000544622 PIGBQ92521 554 aa15.45■□□□□ 0.06
YBX3-216ENST00000544622 KAT6BQ8WYB5 2073 aa15.45■□□□□ 0.06
YBX3-216ENST00000544622 MPRIPQ6WCQ1 1025 aa15.44■□□□□ 0.06
YBX3-216ENST00000544622 LRP5O75197 1615 aa15.43■□□□□ 0.06
YBX3-216ENST00000544622 LY75O60449 1722 aa15.43■□□□□ 0.06
YBX3-216ENST00000544622 AKT1S1Q96B36 256 aa15.43■□□□□ 0.06
YBX3-216ENST00000544622 ZEB1P37275 1124 aaPredicted RBP15.42■□□□□ 0.06
YBX3-216ENST00000544622 DCAF5Q96JK2 942 aa15.42■□□□□ 0.06
YBX3-216ENST00000544622 PDGFDQ9GZP0 370 aaPredicted RBP15.42■□□□□ 0.06
YBX3-216ENST00000544622 STK32BQ9NY57 414 aa15.42■□□□□ 0.06
YBX3-216ENST00000544622 ERVV-2B6SEH9 535 aa15.41■□□□□ 0.06
YBX3-216ENST00000544622 HSP90AB1P08238 724 aaKnown RBP15.41■□□□□ 0.06
YBX3-216ENST00000544622 HMOX1P09601 288 aa15.41■□□□□ 0.06
YBX3-216ENST00000544622 ZNF827Q17R98 1081 aa15.41■□□□□ 0.06
YBX3-216ENST00000544622 ITGB4P16144 1822 aa15.4■□□□□ 0.06
YBX3-216ENST00000544622 KCNQ4P56696 695 aa15.4■□□□□ 0.06
YBX3-216ENST00000544622 ZNF530Q6P9A1 599 aaPredicted RBP15.4■□□□□ 0.06
YBX3-216ENST00000544622 CCNL1Q9UK58 526 aaPredicted RBP15.4■□□□□ 0.06
YBX3-216ENST00000544622 KDM6AO15550 1401 aaPredicted RBP15.4■□□□□ 0.06
YBX3-216ENST00000544622 PALLDQ8WX93 1383 aa15.39■□□□□ 0.05
YBX3-216ENST00000544622 SMARCC1Q92922 1105 aaPredicted RBP15.39■□□□□ 0.05
YBX3-216ENST00000544622 CASZ1Q86V15 1759 aa15.39■□□□□ 0.05
YBX3-216ENST00000544622 DDX10Q13206 875 aaKnown RBP15.38■□□□□ 0.05
YBX3-216ENST00000544622 MTHFSDQ2M296 383 aaKnown RBP15.38■□□□□ 0.05
YBX3-216ENST00000544622 AKAP4Q5JQC9 854 aa15.38■□□□□ 0.05
YBX3-216ENST00000544622 ATG3Q9NT62 314 aa15.38■□□□□ 0.05
YBX3-216ENST00000544622 TMOD3Q9NYL9 352 aa15.38■□□□□ 0.05
YBX3-216ENST00000544622 ASAP1Q9ULH1 1129 aa15.38■□□□□ 0.05
YBX3-216ENST00000544622 C1orf141Q5JVX7 400 aa15.37■□□□□ 0.05
YBX3-216ENST00000544622 CFAP53Q96M91 514 aa15.37■□□□□ 0.05
YBX3-216ENST00000544622 U2SURPO15042 1029 aaKnown RBP15.36■□□□□ 0.05
YBX3-216ENST00000544622 SPON1Q9HCB6 807 aa15.36■□□□□ 0.05
YBX3-216ENST00000544622 HMGB2P26583 209 aaKnown RBP15.35■□□□□ 0.05
YBX3-216ENST00000544622 RSPH6AQ9H0K4 717 aa15.35■□□□□ 0.05
YBX3-216ENST00000544622 LGR6Q9HBX8 967 aa15.35■□□□□ 0.05
YBX3-216ENST00000544622 UTRNP46939 3433 aa15.35■□□□□ 0.05
YBX3-216ENST00000544622 PNPLA7Q6ZV29 1317 aa15.35■□□□□ 0.05
YBX3-216ENST00000544622 LOC102724428A0A0B4J2F2 783 aa15.34■□□□□ 0.05
YBX3-216ENST00000544622 PTGER2P43116 358 aa15.34■□□□□ 0.05
YBX3-216ENST00000544622 SIK1P57059 783 aa15.34■□□□□ 0.05
YBX3-216ENST00000544622 NFATC2IPQ8NCF5 419 aa15.34■□□□□ 0.05
YBX3-216ENST00000544622 SGIP1Q9BQI5 828 aa15.34■□□□□ 0.05
YBX3-216ENST00000544622 ADAMTS7Q9UKP4 1686 aa15.33■□□□□ 0.04
YBX3-216ENST00000544622 FCHSD2O94868 740 aa15.33■□□□□ 0.04
YBX3-216ENST00000544622 CABP4P57796 275 aa15.33■□□□□ 0.04
YBX3-216ENST00000544622 RALBP1Q15311 655 aa15.33■□□□□ 0.04
YBX3-216ENST00000544622 PHACTR3Q96KR7 559 aa15.33■□□□□ 0.04
YBX3-216ENST00000544622 SLC4A9Q96Q91 983 aa15.33■□□□□ 0.04
YBX3-216ENST00000544622 MTFR1LQ9H019 292 aa15.33■□□□□ 0.04
YBX3-216ENST00000544622 NUDCQ9Y266 331 aa15.33■□□□□ 0.04
YBX3-216ENST00000544622 QSER1Q2KHR3 1735 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms