RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 MYRIPQ8NFW9 859 aa16.95■□□□□ 0.3
LIMS1-215ENST00000544547 LMBRD1Q9NUN5 540 aa16.95■□□□□ 0.3
LIMS1-215ENST00000544547 TMEM63CQ9P1W3 806 aa16.95■□□□□ 0.3
LIMS1-215ENST00000544547 MAGI2Q86UL8 1455 aa16.95■□□□□ 0.3
LIMS1-215ENST00000544547 IL1RAPL2Q9NP60 686 aa16.95■□□□□ 0.3
LIMS1-215ENST00000544547 CD2BP2O95400 341 aaKnown RBP16.95■□□□□ 0.3
LIMS1-215ENST00000544547 USP48Q86UV5 1035 aa16.95■□□□□ 0.3
LIMS1-215ENST00000544547 PIK3C2GO75747 1445 aa16.94■□□□□ 0.3
LIMS1-215ENST00000544547 NUP160Q12769 1436 aa16.94■□□□□ 0.3
LIMS1-215ENST00000544547 SMC2O95347 1197 aa16.94■□□□□ 0.3
LIMS1-215ENST00000544547 CCDC73Q6ZRK6 1079 aa16.94■□□□□ 0.3
LIMS1-215ENST00000544547 MBD5Q9P267 1494 aa16.94■□□□□ 0.3
LIMS1-215ENST00000544547 TXNDC2Q86VQ3 553 aa16.94■□□□□ 0.3
LIMS1-215ENST00000544547 C14orf93Q9H972 538 aaKnown RBP16.94■□□□□ 0.3
LIMS1-215ENST00000544547 STK3Q13188 491 aa16.94■□□□□ 0.3
LIMS1-215ENST00000544547 PTPN14Q15678 1187 aa16.94■□□□□ 0.3
LIMS1-215ENST00000544547 LARP1BQ659C4 914 aaKnown RBP16.94■□□□□ 0.3
LIMS1-215ENST00000544547 SULT6B1Q6IMI4 303 aa16.94■□□□□ 0.3
LIMS1-215ENST00000544547 RUFY2Q8WXA3 655 aa16.94■□□□□ 0.3
LIMS1-215ENST00000544547 SURF6O75683 361 aaKnown RBP16.94■□□□□ 0.3
LIMS1-215ENST00000544547 EIF2S2P20042 333 aaKnown RBP16.94■□□□□ 0.3
LIMS1-215ENST00000544547 TEFQ10587 303 aa16.94■□□□□ 0.3
LIMS1-215ENST00000544547 TSPYL4Q9UJ04 414 aa16.94■□□□□ 0.3
LIMS1-215ENST00000544547 ZNF500O60304 480 aaPredicted RBP16.93■□□□□ 0.3
LIMS1-215ENST00000544547 FCHSD2O94868 740 aa16.93■□□□□ 0.3
LIMS1-215ENST00000544547 SLC4A2P04920 1241 aa16.93■□□□□ 0.3
LIMS1-215ENST00000544547 KIF20AO95235 890 aa16.93■□□□□ 0.3
LIMS1-215ENST00000544547 GTF2E1P29083 439 aaPredicted RBP16.93■□□□□ 0.3
LIMS1-215ENST00000544547 MAP3K11Q16584 847 aa16.93■□□□□ 0.3
LIMS1-215ENST00000544547 ZFP91Q96JP5 570 aaPredicted RBP16.93■□□□□ 0.3
LIMS1-215ENST00000544547 EMILIN1Q9Y6C2 1016 aa16.93■□□□□ 0.3
LIMS1-215ENST00000544547 KRT85P78386 507 aa16.93■□□□□ 0.3
LIMS1-215ENST00000544547 TOMM22Q9NS69 142 aa16.93■□□□□ 0.3
LIMS1-215ENST00000544547 SDSP20132 328 aa16.92■□□□□ 0.3
LIMS1-215ENST00000544547 CCDC83Q8IWF9 413 aa16.92■□□□□ 0.3
LIMS1-215ENST00000544547 IDI1Q13907 227 aa16.92■□□□□ 0.3
LIMS1-215ENST00000544547 CCDC186Q7Z3E2 898 aa16.92■□□□□ 0.3
LIMS1-215ENST00000544547 TIGD1Q96MW7 591 aa16.92■□□□□ 0.3
LIMS1-215ENST00000544547 MIS18AQ9NYP9 233 aa16.92■□□□□ 0.3
LIMS1-215ENST00000544547 CALCOCO1Q9P1Z2 691 aa16.92■□□□□ 0.3
LIMS1-215ENST00000544547 CNPY2Q9Y2B0 182 aa16.92■□□□□ 0.3
LIMS1-215ENST00000544547 TARBP1Q13395 1621 aaKnown RBP16.92■□□□□ 0.3
LIMS1-215ENST00000544547 PBRM1Q86U86 1689 aa16.92■□□□□ 0.3
LIMS1-215ENST00000544547 JARID2Q92833 1246 aaPredicted RBP16.92■□□□□ 0.3
LIMS1-215ENST00000544547 ZBTB40Q9NUA8 1239 aa16.92■□□□□ 0.3
LIMS1-215ENST00000544547 RIOK3O14730 519 aaKnown RBP16.91■□□□□ 0.3
LIMS1-215ENST00000544547 POLR3AO14802 1390 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-215ENST00000544547 DTNBO60941 627 aa16.91■□□□□ 0.3
LIMS1-215ENST00000544547 NFE2L2Q16236 605 aa16.91■□□□□ 0.3
LIMS1-215ENST00000544547 TTC22Q5TAA0 569 aa16.91■□□□□ 0.3
LIMS1-215ENST00000544547 NUTM2GQ5VZR2 741 aa16.9■□□□□ 0.3
LIMS1-215ENST00000544547 BCL2L12Q9HB09 334 aa16.9■□□□□ 0.3
LIMS1-215ENST00000544547 ZNF521Q96K83 1311 aa16.9■□□□□ 0.3
LIMS1-215ENST00000544547 FAM83GA6ND36 823 aa16.9■□□□□ 0.3
LIMS1-215ENST00000544547 CWC15Q9P013 229 aaKnown RBP16.9■□□□□ 0.3
LIMS1-215ENST00000544547 APPP05067 770 aa16.9■□□□□ 0.3
LIMS1-215ENST00000544547 ZBTB9Q96C00 473 aa16.9■□□□□ 0.3
LIMS1-215ENST00000544547 LRRCC1Q9C099 1032 aa16.9■□□□□ 0.3
LIMS1-215ENST00000544547 CLIP2Q9UDT6 1046 aa16.9■□□□□ 0.3
LIMS1-215ENST00000544547 UVSSAQ2YD98 709 aa16.89■□□□□ 0.29
LIMS1-215ENST00000544547 CWC27Q6UX04 472 aaKnown RBP16.89■□□□□ 0.29
LIMS1-215ENST00000544547 IFIT2P09913 472 aaKnown RBP16.89■□□□□ 0.29
LIMS1-215ENST00000544547 CCDC34Q96HJ3 373 aa16.89■□□□□ 0.29
LIMS1-215ENST00000544547 SPATA32Q96LK8 384 aa16.89■□□□□ 0.29
LIMS1-215ENST00000544547 TFIP11Q9UBB9 837 aaKnown RBP16.89■□□□□ 0.29
LIMS1-215ENST00000544547 FYB1O15117 783 aa16.88■□□□□ 0.29
LIMS1-215ENST00000544547 RPAP2Q8IXW5 612 aaPredicted RBP16.88■□□□□ 0.29
LIMS1-215ENST00000544547 KRT222Q8N1A0 295 aa16.88■□□□□ 0.29
LIMS1-215ENST00000544547 PDILTQ8N807 584 aa16.88■□□□□ 0.29
LIMS1-215ENST00000544547 PTGS1P23219 599 aa16.88■□□□□ 0.29
LIMS1-215ENST00000544547 PLCH2O75038 1416 aa16.88■□□□□ 0.29
LIMS1-215ENST00000544547 DUOX2Q9NRD8 1548 aa16.88■□□□□ 0.29
LIMS1-215ENST00000544547 KINO60870 393 aaKnown RBP16.88■□□□□ 0.29
LIMS1-215ENST00000544547 NOM1Q5C9Z4 860 aaKnown RBP16.88■□□□□ 0.29
LIMS1-215ENST00000544547 NME9Q86XW9 330 aa16.88■□□□□ 0.29
LIMS1-215ENST00000544547 PIBF1Q8WXW3 757 aa16.88■□□□□ 0.29
LIMS1-215ENST00000544547 UBXN4Q92575 508 aa16.88■□□□□ 0.29
LIMS1-215ENST00000544547 MCM10Q7L590 875 aa16.88■□□□□ 0.29
LIMS1-215ENST00000544547 DMTNQ08495 405 aa16.87■□□□□ 0.29
LIMS1-215ENST00000544547 JAKMIP1Q96N16 626 aaKnown RBP16.87■□□□□ 0.29
LIMS1-215ENST00000544547 ALDH1L2Q3SY69 923 aa16.87■□□□□ 0.29
LIMS1-215ENST00000544547 C1orf141Q5JVX7 400 aa16.87■□□□□ 0.29
LIMS1-215ENST00000544547 RPGRIP1LQ68CZ1 1315 aa16.87■□□□□ 0.29
LIMS1-215ENST00000544547 GNAI2P04899 355 aa16.87■□□□□ 0.29
LIMS1-215ENST00000544547 CASTP20810 708 aaKnown RBP16.87■□□□□ 0.29
LIMS1-215ENST00000544547 KIF18AQ8NI77 898 aa16.87■□□□□ 0.29
LIMS1-215ENST00000544547 ZNF428Q96B54 188 aa16.87■□□□□ 0.29
LIMS1-215ENST00000544547 NUTM1Q86Y26 1132 aa16.86■□□□□ 0.29
LIMS1-215ENST00000544547 TMX4Q9H1E5 349 aaPredicted RBP16.86■□□□□ 0.29
LIMS1-215ENST00000544547 ADGRL1O94910 1474 aa16.86■□□□□ 0.29
LIMS1-215ENST00000544547 LRRIQ1Q96JM4 1722 aa16.86■□□□□ 0.29
LIMS1-215ENST00000544547 UBTFL1P0CB47 393 aaPredicted RBP16.86■□□□□ 0.29
LIMS1-215ENST00000544547 HSP90B2PQ58FF3 399 aa16.86■□□□□ 0.29
LIMS1-215ENST00000544547 FBXO31Q5XUX0 539 aaPredicted RBP16.86■□□□□ 0.29
LIMS1-215ENST00000544547 TTLL5Q6EMB2 1281 aa16.86■□□□□ 0.29
LIMS1-215ENST00000544547 TRMT2AQ8IZ69 625 aaKnown RBP16.86■□□□□ 0.29
LIMS1-215ENST00000544547 GPT2Q8TD30 523 aa16.86■□□□□ 0.29
LIMS1-215ENST00000544547 NOL10Q9BSC4 688 aaKnown RBP16.86■□□□□ 0.29
LIMS1-215ENST00000544547 EIF4G3O43432 1585 aaKnown RBP16.86■□□□□ 0.29
LIMS1-215ENST00000544547 CNTROBQ8N137 903 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms