RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-222ENST00000543744 C22orf23Q9BZE7 217 aa22.33■■□□□ 1.17
PTPN6-222ENST00000543744 INTS3Q68E01 1043 aaKnown RBP22.32■■□□□ 1.16
PTPN6-222ENST00000543744 EYA1Q99502 592 aa22.32■■□□□ 1.16
PTPN6-222ENST00000543744 IGSF1Q8N6C5 1336 aa22.32■■□□□ 1.16
PTPN6-222ENST00000543744 CEP170BQ9Y4F5 1589 aaPredicted RBP22.32■■□□□ 1.16
PTPN6-222ENST00000543744 FOXO3O43524 673 aa22.31■■□□□ 1.16
PTPN6-222ENST00000543744 GAS2L2Q8NHY3 880 aa22.3■■□□□ 1.16
PTPN6-222ENST00000543744 PTPRCP08575 1304 aa22.29■■□□□ 1.16
PTPN6-222ENST00000543744 BMP2KLQ5H9B9 411 aa22.29■■□□□ 1.16
PTPN6-222ENST00000543744 TBC1D2Q9BYX2 928 aa22.29■■□□□ 1.16
PTPN6-222ENST00000543744 NUTM2GQ5VZR2 741 aa22.28■■□□□ 1.16
PTPN6-222ENST00000543744 TSPYL4Q9UJ04 414 aa22.28■■□□□ 1.16
PTPN6-222ENST00000543744 ABTB2Q8N961 1025 aa22.28■■□□□ 1.16
PTPN6-222ENST00000543744 MIS18AQ9NYP9 233 aa22.28■■□□□ 1.16
PTPN6-222ENST00000543744 RGS12O14924 1447 aa22.27■■□□□ 1.16
PTPN6-222ENST00000543744 HOXC9P31274 260 aa22.26■■□□□ 1.15
PTPN6-222ENST00000543744 ANKLE2Q86XL3 938 aa22.26■■□□□ 1.15
PTPN6-222ENST00000543744 FRAT2O75474 233 aaPredicted RBP22.26■■□□□ 1.15
PTPN6-222ENST00000543744 HTATSF1O43719 755 aaKnown RBP22.25■■□□□ 1.15
PTPN6-222ENST00000543744 SLC4A2P04920 1241 aa22.25■■□□□ 1.15
PTPN6-222ENST00000543744 SLKQ9H2G2 1235 aaPredicted RBP22.25■■□□□ 1.15
PTPN6-222ENST00000543744 BCL11AQ9H165 835 aa22.24■■□□□ 1.15
PTPN6-222ENST00000543744 PHF8Q9UPP1 1060 aa22.23■■□□□ 1.15
PTPN6-222ENST00000543744 DCTPP1Q9H773 170 aa22.23■■□□□ 1.15
PTPN6-222ENST00000543744 C14orf37Q86TY3 774 aa22.22■■□□□ 1.15
PTPN6-222ENST00000543744 RPAP2Q8IXW5 612 aaPredicted RBP22.22■■□□□ 1.15
PTPN6-222ENST00000543744 ANKRD44Q8N8A2 993 aa22.22■■□□□ 1.15
PTPN6-222ENST00000543744 ANTXR1Q9H6X2 564 aa22.21■■□□□ 1.15
PTPN6-222ENST00000543744 USP54Q70EL1 1684 aa22.21■■□□□ 1.15
PTPN6-222ENST00000543744 GNAT3A8MTJ3 354 aa22.21■■□□□ 1.15
PTPN6-222ENST00000543744 MSH6P52701 1360 aa22.2■■□□□ 1.14
PTPN6-222ENST00000543744 MARF1Q9Y4F3 1742 aaKnown RBP22.2■■□□□ 1.14
PTPN6-222ENST00000543744 GSE1Q14687 1217 aa22.2■■□□□ 1.14
PTPN6-222ENST00000543744 RBM25P49756 843 aaKnown RBP22.19■■□□□ 1.14
PTPN6-222ENST00000543744 ATP10DQ9P241 1426 aa22.19■■□□□ 1.14
PTPN6-222ENST00000543744 LTV1Q96GA3 475 aaPredicted RBP22.19■■□□□ 1.14
PTPN6-222ENST00000543744 CEP85Q6P2H3 762 aa22.18■■□□□ 1.14
PTPN6-222ENST00000543744 RTL1A6NKG5 1358 aa22.18■■□□□ 1.14
PTPN6-222ENST00000543744 CHD2O14647 1828 aaKnown RBP22.18■■□□□ 1.14
PTPN6-222ENST00000543744 NWD1Q149M9 1564 aa22.17■■□□□ 1.14
PTPN6-222ENST00000543744 MEIS3Q99687 375 aa22.17■■□□□ 1.14
PTPN6-222ENST00000543744 STK31Q9BXU1 1019 aa22.17■■□□□ 1.14
PTPN6-222ENST00000543744 G2E3Q7L622 706 aa22.16■■□□□ 1.14
PTPN6-222ENST00000543744 CCT4P50991 539 aaKnown RBP22.16■■□□□ 1.14
PTPN6-222ENST00000543744 RBM33Q96EV2 1170 aaKnown RBP22.16■■□□□ 1.14
PTPN6-222ENST00000543744 MAP3K5Q99683 1374 aa22.16■■□□□ 1.14
PTPN6-222ENST00000543744 TBC1D9Q6ZT07 1266 aa22.15■■□□□ 1.14
PTPN6-222ENST00000543744 PLEKHM2Q8IWE5 1019 aa22.15■■□□□ 1.14
PTPN6-222ENST00000543744 SLC4A10Q6U841 1118 aa22.14■■□□□ 1.14
PTPN6-222ENST00000543744 HSCBQ8IWL3 235 aa22.14■■□□□ 1.14
PTPN6-222ENST00000543744 LRRC37A3O60309 1634 aa22.14■■□□□ 1.14
PTPN6-222ENST00000543744 PSME1Q06323 249 aa22.14■■□□□ 1.13
PTPN6-222ENST00000543744 ZNF142P52746 1687 aaPredicted RBP22.13■■□□□ 1.13
PTPN6-222ENST00000543744 CCDC30Q5VVM6 783 aa22.13■■□□□ 1.13
PTPN6-222ENST00000543744 IL17REQ8NFR9 667 aa22.13■■□□□ 1.13
PTPN6-222ENST00000543744 F6X3S4 739 aa22.13■■□□□ 1.13
PTPN6-222ENST00000543744 CDC45O75419 566 aa22.13■■□□□ 1.13
PTPN6-222ENST00000543744 ESCO1Q5FWF5 840 aa22.13■■□□□ 1.13
PTPN6-222ENST00000543744 SPRYD3Q8NCJ5 442 aa22.13■■□□□ 1.13
PTPN6-222ENST00000543744 IP6K1Q92551 441 aa22.13■■□□□ 1.13
PTPN6-222ENST00000543744 BABAM1Q9NWV8 329 aa22.13■■□□□ 1.13
PTPN6-222ENST00000543744 TAF7Q15545 349 aaPredicted RBP22.12■■□□□ 1.13
PTPN6-222ENST00000543744 ADGRL3Q9HAR2 1447 aa22.12■■□□□ 1.13
PTPN6-222ENST00000543744 SOS1Q07889 1333 aaPredicted RBP22.11■■□□□ 1.13
PTPN6-222ENST00000543744 HMMRO75330 724 aa22.11■■□□□ 1.13
PTPN6-222ENST00000543744 GSPT1P15170 499 aaKnown RBP22.11■■□□□ 1.13
PTPN6-222ENST00000543744 USHBP1Q8N6Y0 703 aa22.11■■□□□ 1.13
PTPN6-222ENST00000543744 EIF5BO60841 1220 aaKnown RBP22.09■■□□□ 1.13
PTPN6-222ENST00000543744 TTC22Q5TAA0 569 aa22.09■■□□□ 1.13
PTPN6-222ENST00000543744 C16orf71Q8IYS4 520 aaPredicted RBP22.09■■□□□ 1.13
PTPN6-222ENST00000543744 KCNH5Q8NCM2 988 aa22.09■■□□□ 1.13
PTPN6-222ENST00000543744 SNX21Q969T3 373 aa22.09■■□□□ 1.13
PTPN6-222ENST00000543744 FLIIQ13045 1269 aa22.09■■□□□ 1.13
PTPN6-222ENST00000543744 NFAT5O94916 1531 aa22.08■■□□□ 1.12
PTPN6-222ENST00000543744 LTN1O94822 1766 aa22.08■■□□□ 1.12
PTPN6-222ENST00000543744 FKBP5Q13451 457 aaPredicted RBP22.07■■□□□ 1.12
PTPN6-222ENST00000543744 CHMP5Q9NZZ3 219 aa22.07■■□□□ 1.12
PTPN6-222ENST00000543744 APBB1O00213 710 aa22.06■■□□□ 1.12
PTPN6-222ENST00000543744 GNAI2P04899 355 aa22.06■■□□□ 1.12
PTPN6-222ENST00000543744 NECTIN2Q92692 538 aa22.06■■□□□ 1.12
PTPN6-222ENST00000543744 SMARCA5O60264 1052 aaPredicted RBP22.06■■□□□ 1.12
PTPN6-222ENST00000543744 NBPF6Q5VWK0 638 aa22.06■■□□□ 1.12
PTPN6-222ENST00000543744 NBPF4Q96M43 638 aa22.06■■□□□ 1.12
PTPN6-222ENST00000543744 ZBTB7CA1YPR0 619 aa22.05■■□□□ 1.12
PTPN6-222ENST00000543744 NPHP4O75161 1426 aaPredicted RBP22.05■■□□□ 1.12
PTPN6-222ENST00000543744 OTUD7AQ8TE49 926 aaPredicted RBP22.05■■□□□ 1.12
PTPN6-222ENST00000543744 KIF2CQ99661 725 aa22.05■■□□□ 1.12
PTPN6-222ENST00000543744 GNAI3P08754 354 aa22.04■■□□□ 1.12
PTPN6-222ENST00000543744 FAM208AQ9UK61 1670 aaKnown RBP22.04■■□□□ 1.12
PTPN6-222ENST00000543744 ADAMTSL3P82987 1691 aa22.03■■□□□ 1.12
PTPN6-222ENST00000543744 CEMIPQ8WUJ3 1361 aa22.02■■□□□ 1.12
PTPN6-222ENST00000543744 NCOA3Q9Y6Q9 1424 aa22.02■■□□□ 1.11
PTPN6-222ENST00000543744 SETD1BQ9UPS6 1966 aaKnown RBP22.01■■□□□ 1.11
PTPN6-222ENST00000543744 HDGFL1Q5TGJ6 251 aa22.01■■□□□ 1.11
PTPN6-222ENST00000543744 HSP90AB1P08238 724 aaKnown RBP22.01■■□□□ 1.11
PTPN6-222ENST00000543744 ORAI2Q96SN7 254 aa22.01■■□□□ 1.11
PTPN6-222ENST00000543744 SDSP20132 328 aa22■■□□□ 1.11
PTPN6-222ENST00000543744 CASC1Q6TDU7 716 aa22■■□□□ 1.11
PTPN6-222ENST00000543744 GCP02774 474 aa21.99■■□□□ 1.11
PTPN6-222ENST00000543744 LGR6Q9HBX8 967 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms