RNA–Protein interactions for RNA: ENST00000543356.6

GNE-206, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 1 (best) BASIC

Gene GNE, Length 2,576 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-206ENST00000543356 MAP3K5Q99683 1374 aa12.04□□□□□ -0.48
GNE-206ENST00000543356 PLEKHG2Q9H7P9 1386 aa12.04□□□□□ -0.48
GNE-206ENST00000543356 ZC3H6P61129 1189 aaKnown RBP12.04□□□□□ -0.48
GNE-206ENST00000543356 ZNF428Q96B54 188 aa12.04□□□□□ -0.48
GNE-206ENST00000543356 CRBNQ96SW2 442 aa12.04□□□□□ -0.48
GNE-206ENST00000543356 AXIN2Q9Y2T1 843 aa12.04□□□□□ -0.48
GNE-206ENST00000543356 USHBP1Q8N6Y0 703 aa12.03□□□□□ -0.48
GNE-206ENST00000543356 MBIPQ9NS73 344 aa12.03□□□□□ -0.48
GNE-206ENST00000543356 COL22A1Q8NFW1 1626 aaPredicted RBP12.03□□□□□ -0.48
GNE-206ENST00000543356 PLEKHG5O94827 1062 aa12.03□□□□□ -0.48
GNE-206ENST00000543356 DCTN1Q14203 1278 aa12.03□□□□□ -0.48
GNE-206ENST00000543356 PDE3AQ14432 1141 aa12.03□□□□□ -0.48
GNE-206ENST00000543356 C20orf194Q5TEA3 1177 aa12.03□□□□□ -0.48
GNE-206ENST00000543356 KIAA0232Q92628 1395 aa12.02□□□□□ -0.48
GNE-206ENST00000543356 CABLES1Q8TDN4 633 aa12.02□□□□□ -0.48
GNE-206ENST00000543356 RTF1Q92541 710 aaKnown RBP12.02□□□□□ -0.48
GNE-206ENST00000543356 LRRC59Q96AG4 307 aaKnown RBP12.02□□□□□ -0.48
GNE-206ENST00000543356 LAS1LQ9Y4W2 734 aaKnown RBP12.02□□□□□ -0.48
GNE-206ENST00000543356 ALDH1L2Q3SY69 923 aa12.02□□□□□ -0.49
GNE-206ENST00000543356 B4GALNT3Q6L9W6 998 aa12.02□□□□□ -0.49
GNE-206ENST00000543356 MCM10Q7L590 875 aa12.02□□□□□ -0.49
GNE-206ENST00000543356 GNAT3A8MTJ3 354 aa12.01□□□□□ -0.49
GNE-206ENST00000543356 CHL1O00533 1208 aa12.01□□□□□ -0.49
GNE-206ENST00000543356 CCDC136Q96JN2 1154 aa12.01□□□□□ -0.49
GNE-206ENST00000543356 OVOS2A0A0G2JMS6 1433 aa12.01□□□□□ -0.49
GNE-206ENST00000543356 ADAMTS7Q9UKP4 1686 aa12□□□□□ -0.49
GNE-206ENST00000543356 CANXP27824 592 aaKnown RBP12□□□□□ -0.49
GNE-206ENST00000543356 AMOTQ4VCS5 1084 aa12□□□□□ -0.49
GNE-206ENST00000543356 VIRMAQ69YN4 1812 aaKnown RBP11.99□□□□□ -0.49
GNE-206ENST00000543356 PKD1L3Q7Z443 1732 aa11.99□□□□□ -0.49
GNE-206ENST00000543356 BRPF1P55201 1214 aaPredicted RBP11.99□□□□□ -0.49
GNE-206ENST00000543356 SSH1Q8WYL5 1049 aa11.99□□□□□ -0.49
GNE-206ENST00000543356 SMC4Q9NTJ3 1288 aa11.99□□□□□ -0.49
GNE-206ENST00000543356 CEMIPQ8WUJ3 1361 aa11.99□□□□□ -0.49
GNE-206ENST00000543356 KIF16BQ96L93 1317 aa11.99□□□□□ -0.49
GNE-206ENST00000543356 PLEKHO1Q53GL0 409 aaPredicted RBP11.99□□□□□ -0.49
GNE-206ENST00000543356 EIF5BO60841 1220 aaKnown RBP11.98□□□□□ -0.49
GNE-206ENST00000543356 VAMP4O75379 141 aa11.98□□□□□ -0.49
GNE-206ENST00000543356 BCL2L13Q9BXK5 485 aa11.98□□□□□ -0.49
GNE-206ENST00000543356 BABAM1Q9NWV8 329 aa11.98□□□□□ -0.49
GNE-206ENST00000543356 PARP4Q9UKK3 1724 aaKnown RBP11.98□□□□□ -0.49
GNE-206ENST00000543356 MS4A1P11836 297 aa11.98□□□□□ -0.49
GNE-206ENST00000543356 HAP1P54257 671 aaPredicted RBP11.98□□□□□ -0.49
GNE-206ENST00000543356 ZKSCAN2Q63HK3 967 aa11.98□□□□□ -0.49
GNE-206ENST00000543356 FRAT1Q92837 279 aaPredicted RBP11.98□□□□□ -0.49
GNE-206ENST00000543356 COL5A2P05997 1499 aaPredicted RBP11.98□□□□□ -0.49
GNE-206ENST00000543356 KDM3BQ7LBC6 1761 aa11.98□□□□□ -0.49
GNE-206ENST00000543356 PHLPP1O60346 1717 aa11.97□□□□□ -0.49
GNE-206ENST00000543356 COL16A1Q07092 1604 aaPredicted RBP11.97□□□□□ -0.49
GNE-206ENST00000543356 TWISTNBQ3B726 338 aaPredicted RBP11.97□□□□□ -0.49
GNE-206ENST00000543356 AKAP4Q5JQC9 854 aa11.97□□□□□ -0.49
GNE-206ENST00000543356 CHRNA2Q15822 529 aa11.97□□□□□ -0.49
GNE-206ENST00000543356 COL14A1Q05707 1796 aaKnown RBP11.96□□□□□ -0.49
GNE-206ENST00000543356 TSPYL6Q8N831 410 aa11.96□□□□□ -0.49
GNE-206ENST00000543356 C8orf58Q8NAV2 365 aa11.96□□□□□ -0.49
GNE-206ENST00000543356 IL17REQ8NFR9 667 aa11.96□□□□□ -0.49
GNE-206ENST00000543356 PRDM11Q9NQV5 511 aa11.96□□□□□ -0.49
GNE-206ENST00000543356 SIPA1L3O60292 1781 aaPredicted RBP11.96□□□□□ -0.49
GNE-206ENST00000543356 MEGF6O75095 1541 aa11.96□□□□□ -0.49
GNE-206ENST00000543356 AAMPQ13685 434 aa11.96□□□□□ -0.5
GNE-206ENST00000543356 ZNF530Q6P9A1 599 aaPredicted RBP11.96□□□□□ -0.5
GNE-206ENST00000543356 NLRP2Q9NX02 1062 aa11.95□□□□□ -0.5
GNE-206ENST00000543356 TSPYL4Q9UJ04 414 aa11.95□□□□□ -0.5
GNE-206ENST00000543356 WDR17Q8IZU2 1322 aa11.95□□□□□ -0.5
GNE-206ENST00000543356 IPO8O15397 1037 aaKnown RBP11.95□□□□□ -0.5
GNE-206ENST00000543356 CSB-PGBD3P0DP91 1061 aa11.95□□□□□ -0.5
GNE-206ENST00000543356 MRPL50Q8N5N7 158 aaKnown RBP11.95□□□□□ -0.5
GNE-206ENST00000543356 PANK1Q8TE04 598 aa11.95□□□□□ -0.5
GNE-206ENST00000543356 ATF7IPQ6VMQ6 1270 aa11.94□□□□□ -0.5
GNE-206ENST00000543356 RAPGEF4Q8WZA2 1011 aa11.94□□□□□ -0.5
GNE-206ENST00000543356 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.94□□□□□ -0.51e-6■■■■□ 22.3
GNE-206ENST00000543356 SOS1Q07889 1333 aaPredicted RBP11.94□□□□□ -0.5
GNE-206ENST00000543356 SCN11AQ9UI33 1791 aa11.94□□□□□ -0.5
GNE-206ENST00000543356 MSH5O43196 834 aa11.94□□□□□ -0.5
GNE-206ENST00000543356 TAF7Q15545 349 aaPredicted RBP11.94□□□□□ -0.5
GNE-206ENST00000543356 C1orf141Q5JVX7 400 aa11.94□□□□□ -0.5
GNE-206ENST00000543356 DZIP1LQ8IYY4 767 aaKnown RBP11.94□□□□□ -0.5
GNE-206ENST00000543356 NOB1Q9ULX3 412 aaKnown RBP11.94□□□□□ -0.5
GNE-206ENST00000543356 TRIM27P14373 513 aa11.93□□□□□ -0.5
GNE-206ENST00000543356 TATP17735 454 aaPredicted RBP11.93□□□□□ -0.5
GNE-206ENST00000543356 ARHGAP45Q92619 1136 aa11.93□□□□□ -0.5
GNE-206ENST00000543356 ARXQ96QS3 562 aa11.93□□□□□ -0.5
GNE-206ENST00000543356 RLBP1P12271 317 aa11.93□□□□□ -0.5
GNE-206ENST00000543356 TNNQ9UQP3 1299 aa11.93□□□□□ -0.5
GNE-206ENST00000543356 COG6Q9Y2V7 657 aa11.93□□□□□ -0.5
GNE-206ENST00000543356 MVPQ14764 893 aaKnown RBP11.92□□□□□ -0.5
GNE-206ENST00000543356 FTSJ3Q8IY81 847 aaKnown RBP11.92□□□□□ -0.5
GNE-206ENST00000543356 SPG7Q9UQ90 795 aa11.92□□□□□ -0.5
GNE-206ENST00000543356 MRC1P22897 1456 aa11.92□□□□□ -0.5
GNE-206ENST00000543356 ELL2O00472 640 aaPredicted RBP11.91□□□□□ -0.5
GNE-206ENST00000543356 TOM1O60784 492 aa11.91□□□□□ -0.5
GNE-206ENST00000543356 MIS18AQ9NYP9 233 aa11.91□□□□□ -0.5
GNE-206ENST00000543356 PLCH1Q4KWH8 1693 aa11.91□□□□□ -0.5
GNE-206ENST00000543356 RNMTO43148 476 aaKnown RBP11.91□□□□□ -0.5
GNE-206ENST00000543356 CLUAP1Q96AJ1 413 aa11.91□□□□□ -0.5
GNE-206ENST00000543356 KDM2BQ8NHM5 1336 aa11.91□□□□□ -0.5
GNE-206ENST00000543356 KRT24Q2M2I5 525 aa11.9□□□□□ -0.5
GNE-206ENST00000543356 LGR6Q9HBX8 967 aa11.9□□□□□ -0.5
GNE-206ENST00000543356 SHANK3Q9BYB0 1731 aa11.9□□□□□ -0.5
GNE-206ENST00000543356 CARD10Q9BWT7 1032 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms