RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 MCM10Q7L590 875 aa21.74■■□□□ 1.07
SPIDR-227ENST00000541342 XIRP1Q702N8 1843 aaKnown RBP21.74■■□□□ 1.07
SPIDR-227ENST00000541342 SLIT3O75094 1523 aa21.73■■□□□ 1.07
SPIDR-227ENST00000541342 LTV1Q96GA3 475 aaPredicted RBP21.73■■□□□ 1.07
SPIDR-227ENST00000541342 PDZRN3Q9UPQ7 1066 aa21.73■■□□□ 1.07
SPIDR-227ENST00000541342 AAMPQ13685 434 aa21.73■■□□□ 1.07
SPIDR-227ENST00000541342 DCCP43146 1447 aa21.72■■□□□ 1.07
SPIDR-227ENST00000541342 NCOA3Q9Y6Q9 1424 aa21.72■■□□□ 1.07
SPIDR-227ENST00000541342 VAMP4O75379 141 aa21.72■■□□□ 1.07
SPIDR-227ENST00000541342 KRT28Q7Z3Y7 464 aa21.72■■□□□ 1.07
SPIDR-227ENST00000541342 TRIM27P14373 513 aa21.72■■□□□ 1.07
SPIDR-227ENST00000541342 ALDH1L2Q3SY69 923 aa21.72■■□□□ 1.07
SPIDR-227ENST00000541342 IP6K1Q92551 441 aa21.72■■□□□ 1.07
SPIDR-227ENST00000541342 NOB1Q9ULX3 412 aaKnown RBP21.72■■□□□ 1.07
SPIDR-227ENST00000541342 ATF3P18847 181 aa21.71■■□□□ 1.07
SPIDR-227ENST00000541342 KCNH5Q8NCM2 988 aa21.71■■□□□ 1.07
SPIDR-227ENST00000541342 ANTXR1Q9H6X2 564 aa21.71■■□□□ 1.07
SPIDR-227ENST00000541342 ALS2Q96Q42 1657 aa21.71■■□□□ 1.07
SPIDR-227ENST00000541342 DZIP1LQ8IYY4 767 aaKnown RBP21.7■■□□□ 1.06
SPIDR-227ENST00000541342 RGPD2P0DJD1 1756 aa21.7■■□□□ 1.06
SPIDR-227ENST00000541342 C8orf58Q8NAV2 365 aa21.7■■□□□ 1.06
SPIDR-227ENST00000541342 TBC1D32Q96NH3 1257 aa21.7■■□□□ 1.06
SPIDR-227ENST00000541342 CRB1P82279 1406 aa21.69■■□□□ 1.06
SPIDR-227ENST00000541342 ATF7IPQ6VMQ6 1270 aa21.69■■□□□ 1.06
SPIDR-227ENST00000541342 ELL2O00472 640 aaPredicted RBP21.69■■□□□ 1.06
SPIDR-227ENST00000541342 GCP02774 474 aa21.69■■□□□ 1.06
SPIDR-227ENST00000541342 MVPQ14764 893 aaKnown RBP21.68■■□□□ 1.06
SPIDR-227ENST00000541342 ZNF428Q96B54 188 aa21.68■■□□□ 1.06
SPIDR-227ENST00000541342 PLEKHG5O94827 1062 aa21.68■■□□□ 1.06
SPIDR-227ENST00000541342 LMOD2Q6P5Q4 547 aa21.68■■□□□ 1.06
SPIDR-227ENST00000541342 FTSJ3Q8IY81 847 aaKnown RBP21.68■■□□□ 1.06
SPIDR-227ENST00000541342 DDX17Q92841 729 aaKnown RBP21.68■■□□□ 1.06
SPIDR-227ENST00000541342 SLKQ9H2G2 1235 aaPredicted RBP21.68■■□□□ 1.06
SPIDR-227ENST00000541342 USHBP1Q8N6Y0 703 aa21.67■■□□□ 1.06
SPIDR-227ENST00000541342 CHL1O00533 1208 aa21.67■■□□□ 1.06
SPIDR-227ENST00000541342 BRPF1P55201 1214 aaPredicted RBP21.67■■□□□ 1.06
SPIDR-227ENST00000541342 KIF16BQ96L93 1317 aa21.67■■□□□ 1.06
SPIDR-227ENST00000541342 ZBTB7CA1YPR0 619 aa21.67■■□□□ 1.06
SPIDR-227ENST00000541342 TWISTNBQ3B726 338 aaPredicted RBP21.67■■□□□ 1.06
SPIDR-227ENST00000541342 BECN1Q14457 450 aa21.66■■□□□ 1.06
SPIDR-227ENST00000541342 ARHGEF25Q86VW2 580 aa21.65■■□□□ 1.06
SPIDR-227ENST00000541342 MRPL50Q8N5N7 158 aaKnown RBP21.65■■□□□ 1.06
SPIDR-227ENST00000541342 GAS2L2Q8NHY3 880 aa21.65■■□□□ 1.06
SPIDR-227ENST00000541342 NBPF6Q5VWK0 638 aa21.65■■□□□ 1.06
SPIDR-227ENST00000541342 NBPF4Q96M43 638 aa21.65■■□□□ 1.06
SPIDR-227ENST00000541342 MED1Q15648 1581 aaPredicted RBP21.65■■□□□ 1.06
SPIDR-227ENST00000541342 LRRC37A3O60309 1634 aa21.64■■□□□ 1.06
SPIDR-227ENST00000541342 TBC1D2Q9BYX2 928 aa21.64■■□□□ 1.06
SPIDR-227ENST00000541342 RWDD1Q9H446 243 aaPredicted RBP21.64■■□□□ 1.05
SPIDR-227ENST00000541342 KRT24Q2M2I5 525 aa21.63■■□□□ 1.05
SPIDR-227ENST00000541342 CADPS2Q86UW7 1296 aa21.63■■□□□ 1.05
SPIDR-227ENST00000541342 MSH6P52701 1360 aa21.63■■□□□ 1.05
SPIDR-227ENST00000541342 TMEM57Q8N5G2 664 aa21.62■■□□□ 1.05
SPIDR-227ENST00000541342 RGPD5Q99666 1765 aa21.62■■□□□ 1.05
SPIDR-227ENST00000541342 IPO8O15397 1037 aaKnown RBP21.62■■□□□ 1.05
SPIDR-227ENST00000541342 RTF1Q92541 710 aaKnown RBP21.62■■□□□ 1.05
SPIDR-227ENST00000541342 MIS18AQ9NYP9 233 aa21.61■■□□□ 1.05
SPIDR-227ENST00000541342 LRRC59Q96AG4 307 aaKnown RBP21.61■■□□□ 1.05
SPIDR-227ENST00000541342 ITPRIPQ8IWB1 547 aa21.6■■□□□ 1.05
SPIDR-227ENST00000541342 AXIN2Q9Y2T1 843 aa21.59■■□□□ 1.05
SPIDR-227ENST00000541342 ZNF335Q9H4Z2 1342 aaPredicted RBP21.59■■□□□ 1.05
SPIDR-227ENST00000541342 GNAT3A8MTJ3 354 aa21.59■■□□□ 1.05
SPIDR-227ENST00000541342 KIAA0232Q92628 1395 aa21.59■■□□□ 1.05
SPIDR-227ENST00000541342 HTATSF1O43719 755 aaKnown RBP21.58■■□□□ 1.05
SPIDR-227ENST00000541342 PXDNQ92626 1479 aa21.58■■□□□ 1.05
SPIDR-227ENST00000541342 UPF2Q9HAU5 1272 aaKnown RBP21.58■■□□□ 1.05
SPIDR-227ENST00000541342 DDX19BQ9UMR2 479 aa21.58■■□□□ 1.04
SPIDR-227ENST00000541342 MAP3K5Q99683 1374 aa21.58■■□□□ 1.04
SPIDR-227ENST00000541342 CAMTA1Q9Y6Y1 1673 aa21.57■■□□□ 1.04
SPIDR-227ENST00000541342 ARHGAP45Q92619 1136 aa21.57■■□□□ 1.04
SPIDR-227ENST00000541342 NPHP3Q7Z494 1330 aa21.56■■□□□ 1.04
SPIDR-227ENST00000541342 NCAPD2Q15021 1401 aa21.56■■□□□ 1.04
SPIDR-227ENST00000541342 IL17REQ8NFR9 667 aa21.56■■□□□ 1.04
SPIDR-227ENST00000541342 CRYBG1Q9Y4K1 1723 aa21.55■■□□□ 1.04
SPIDR-227ENST00000541342 ANKRD24Q8TF21 1146 aa21.55■■□□□ 1.04
SPIDR-227ENST00000541342 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.55■■□□□ 1.04
SPIDR-227ENST00000541342 TSPYL4Q9UJ04 414 aa21.55■■□□□ 1.04
SPIDR-227ENST00000541342 HDAC1Q13547 482 aaPredicted RBP21.55■■□□□ 1.04
SPIDR-227ENST00000541342 TNS3Q68CZ2 1445 aa21.54■■□□□ 1.04
SPIDR-227ENST00000541342 ZC3H6P61129 1189 aaKnown RBP21.54■■□□□ 1.04
SPIDR-227ENST00000541342 ZBTB40Q9NUA8 1239 aa21.54■■□□□ 1.04
SPIDR-227ENST00000541342 BRINP3Q76B58 766 aa21.53■■□□□ 1.04
SPIDR-227ENST00000541342 ABCC4O15439 1325 aa21.52■■□□□ 1.04
SPIDR-227ENST00000541342 COL18A1P39060 1754 aa21.52■■□□□ 1.04
SPIDR-227ENST00000541342 CABLES1Q8TDN4 633 aa21.52■■□□□ 1.03
SPIDR-227ENST00000541342 LMO7Q8WWI1 1683 aa21.51■■□□□ 1.03
SPIDR-227ENST00000541342 SPATA31A3Q5VYP0 1347 aa21.5■■□□□ 1.03
SPIDR-227ENST00000541342 SMC5Q8IY18 1101 aa21.5■■□□□ 1.03
SPIDR-227ENST00000541342 SPRYD3Q8NCJ5 442 aa21.5■■□□□ 1.03
SPIDR-227ENST00000541342 C22orf23Q9BZE7 217 aa21.5■■□□□ 1.03
SPIDR-227ENST00000541342 ERBB3P21860 1342 aa21.49■■□□□ 1.03
SPIDR-227ENST00000541342 CEMIPQ8WUJ3 1361 aa21.49■■□□□ 1.03
SPIDR-227ENST00000541342 RGS12O14924 1447 aa21.49■■□□□ 1.03
SPIDR-227ENST00000541342 HAP1P54257 671 aaPredicted RBP21.48■■□□□ 1.03
SPIDR-227ENST00000541342 MFAP1P55081 439 aaKnown RBP21.48■■□□□ 1.03
SPIDR-227ENST00000541342 ZBTB7BO15156 539 aaPredicted RBP21.48■■□□□ 1.03
SPIDR-227ENST00000541342 TAF7Q15545 349 aaPredicted RBP21.47■■□□□ 1.03
SPIDR-227ENST00000541342 FAM43AQ8N2R8 423 aa21.47■■□□□ 1.03
SPIDR-227ENST00000541342 API5Q9BZZ5 524 aaKnown RBP21.47■■□□□ 1.03
SPIDR-227ENST00000541342 LGR6Q9HBX8 967 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 323.8 ms