RNA–Protein interactions for RNA: ENST00000540891.1

CD9-209, Transcript of CD9 molecule, humanhuman

TSL 3

Gene CD9, Length 642 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-209ENST00000540891 BCL11BQ9C0K0 894 aaPredicted RBP23■■□□□ 1.27
CD9-209ENST00000540891 TATP17735 454 aaPredicted RBP22.99■■□□□ 1.27
CD9-209ENST00000540891 KCNQ2O43526 872 aa22.98■■□□□ 1.27
CD9-209ENST00000540891 CNGB1Q14028 1251 aaPredicted RBP22.98■■□□□ 1.27
CD9-209ENST00000540891 IGSF1Q8N6C5 1336 aa22.98■■□□□ 1.27
CD9-209ENST00000540891 NHSQ6T4R5 1651 aa22.97■■□□□ 1.27
CD9-209ENST00000540891 MTHFSP49914 203 aa22.97■■□□□ 1.27
CD9-209ENST00000540891 ACSBG1Q96GR2 724 aa22.97■■□□□ 1.27
CD9-209ENST00000540891 PARD3Q8TEW0 1356 aa22.96■■□□□ 1.27
CD9-209ENST00000540891 ZEB1P37275 1124 aaPredicted RBP22.95■■□□□ 1.26
CD9-209ENST00000540891 PKD1L3Q7Z443 1732 aa22.95■■□□□ 1.26
CD9-209ENST00000540891 RREB1Q92766 1687 aa22.94■■□□□ 1.26
CD9-209ENST00000540891 IL13P35225 146 aa22.94■■□□□ 1.26
CD9-209ENST00000540891 RGPD3A6NKT7 1758 aaPredicted RBP22.92■■□□□ 1.26
CD9-209ENST00000540891 RGPD4Q7Z3J3 1758 aa22.92■■□□□ 1.26
CD9-209ENST00000540891 PLSCR1O15162 318 aa22.92■■□□□ 1.26
CD9-209ENST00000540891 PCDH11XQ9BZA7 1347 aa22.91■■□□□ 1.26
CD9-209ENST00000540891 PCDH11YQ9BZA8 1340 aa22.91■■□□□ 1.26
CD9-209ENST00000540891 CYP27B1O15528 508 aa22.91■■□□□ 1.26
CD9-209ENST00000540891 DOT1LQ8TEK3 1739 aa22.91■■□□□ 1.26
CD9-209ENST00000540891 AEBP1Q8IUX7 1158 aa22.9■■□□□ 1.26
CD9-209ENST00000540891 NUP188Q5SRE5 1749 aa22.9■■□□□ 1.26
CD9-209ENST00000540891 COL3A1P02461 1466 aaPredicted RBP22.9■■□□□ 1.26
CD9-209ENST00000540891 PROM2Q8N271 834 aa22.89■■□□□ 1.25
CD9-209ENST00000540891 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.88■■□□□ 1.25
CD9-209ENST00000540891 KDRP35968 1356 aa22.88■■□□□ 1.25
CD9-209ENST00000540891 PLEKHG2Q9H7P9 1386 aa22.88■■□□□ 1.25
CD9-209ENST00000540891 BTAF1O14981 1849 aa22.87■■□□□ 1.25
CD9-209ENST00000540891 PRIM1P49642 420 aaKnown RBP22.86■■□□□ 1.25
CD9-209ENST00000540891 SPG7Q9UQ90 795 aa22.86■■□□□ 1.25
CD9-209ENST00000540891 SULT6B1Q6IMI4 303 aa22.85■■□□□ 1.25
CD9-209ENST00000540891 PPP2R1AP30153 589 aa22.84■■□□□ 1.25
CD9-209ENST00000540891 NKX1-1Q15270 411 aaPredicted RBP22.84■■□□□ 1.25
CD9-209ENST00000540891 TOGARAM1Q9Y4F4 1720 aa22.84■■□□□ 1.25
CD9-209ENST00000540891 PSDA5PKW4 1024 aaPredicted RBP22.83■■□□□ 1.25
CD9-209ENST00000540891 DIAPH1O60610 1272 aaKnown RBP22.83■■□□□ 1.25
CD9-209ENST00000540891 DDX10Q13206 875 aaKnown RBP22.83■■□□□ 1.25
CD9-209ENST00000540891 TXNRD1Q16881 649 aa22.83■■□□□ 1.25
CD9-209ENST00000540891 SYTL4Q96C24 671 aaPredicted RBP22.83■■□□□ 1.25
CD9-209ENST00000540891 PHKG2P15735 406 aa22.82■■□□□ 1.24
CD9-209ENST00000540891 R3HDM1Q15032 1099 aaKnown RBP22.81■■□□□ 1.24
CD9-209ENST00000540891 KAT6BQ8WYB5 2073 aa22.81■■□□□ 1.24
CD9-209ENST00000540891 IFNL2Q8IZJ0 200 aa22.8■■□□□ 1.24
CD9-209ENST00000540891 HMOX1P09601 288 aa22.79■■□□□ 1.24
CD9-209ENST00000540891 PLEKHO1Q53GL0 409 aaPredicted RBP22.79■■□□□ 1.24
CD9-209ENST00000540891 ANO8Q9HCE9 1232 aaPredicted RBP22.79■■□□□ 1.24
CD9-209ENST00000540891 AMOTQ4VCS5 1084 aa22.77■■□□□ 1.24
CD9-209ENST00000540891 NBPF14Q5TI25 921 aa22.76■■□□□ 1.23
CD9-209ENST00000540891 PAPPAQ13219 1627 aa22.75■■□□□ 1.23
CD9-209ENST00000540891 ZNF530Q6P9A1 599 aaPredicted RBP22.75■■□□□ 1.23
CD9-209ENST00000540891 LRRC4BQ9NT99 713 aa22.75■■□□□ 1.23
CD9-209ENST00000540891 ITGB4P16144 1822 aa22.75■■□□□ 1.23
CD9-209ENST00000540891 LY75O60449 1722 aa22.74■■□□□ 1.23
CD9-209ENST00000540891 MPRIPQ6WCQ1 1025 aa22.74■■□□□ 1.23
CD9-209ENST00000540891 CFAP53Q96M91 514 aa22.74■■□□□ 1.23
CD9-209ENST00000540891 KDM6AO15550 1401 aaPredicted RBP22.74■■□□□ 1.23
CD9-209ENST00000540891 U2SURPO15042 1029 aaKnown RBP22.73■■□□□ 1.23
CD9-209ENST00000540891 PIGBQ92521 554 aa22.73■■□□□ 1.23
CD9-209ENST00000540891 KCNQ4P56696 695 aa22.7■■□□□ 1.22
CD9-209ENST00000540891 SLC27A3Q5K4L6 730 aa22.7■■□□□ 1.22
CD9-209ENST00000540891 DCAF5Q96JK2 942 aa22.7■■□□□ 1.22
CD9-209ENST00000540891 HSP90AB1P08238 724 aaKnown RBP22.69■■□□□ 1.22
CD9-209ENST00000540891 PALLDQ8WX93 1383 aa22.68■■□□□ 1.22
CD9-209ENST00000540891 RALBP1Q15311 655 aa22.68■■□□□ 1.22
CD9-209ENST00000540891 SLC15A2Q16348 729 aa22.68■■□□□ 1.22
CD9-209ENST00000540891 MTHFSDQ2M296 383 aaKnown RBP22.68■■□□□ 1.22
CD9-209ENST00000540891 C1orf141Q5JVX7 400 aa22.68■■□□□ 1.22
CD9-209ENST00000540891 TMOD3Q9NYL9 352 aa22.68■■□□□ 1.22
CD9-209ENST00000540891 ZNF827Q17R98 1081 aa22.67■■□□□ 1.22
CD9-209ENST00000540891 STK32BQ9NY57 414 aa22.67■■□□□ 1.22
CD9-209ENST00000540891 SRCAPQ6ZRS2 3230 aa22.67■■□□□ 1.22
CD9-209ENST00000540891 ERVV-2B6SEH9 535 aa22.66■■□□□ 1.22
CD9-209ENST00000540891 AKAP4Q5JQC9 854 aa22.66■■□□□ 1.22
CD9-209ENST00000540891 RSPH6AQ9H0K4 717 aa22.66■■□□□ 1.22
CD9-209ENST00000540891 CCNL1Q9UK58 526 aaPredicted RBP22.66■■□□□ 1.22
CD9-209ENST00000540891 NUDCQ9Y266 331 aa22.66■■□□□ 1.22
CD9-209ENST00000540891 PDGFDQ9GZP0 370 aaPredicted RBP22.65■■□□□ 1.22
CD9-209ENST00000540891 CASZ1Q86V15 1759 aa22.65■■□□□ 1.22
CD9-209ENST00000540891 SMARCC1Q92922 1105 aaPredicted RBP22.64■■□□□ 1.21
CD9-209ENST00000540891 AKT1S1Q96B36 256 aa22.64■■□□□ 1.21
CD9-209ENST00000540891 ATG3Q9NT62 314 aa22.64■■□□□ 1.21
CD9-209ENST00000540891 ASAP1Q9ULH1 1129 aa22.64■■□□□ 1.21
CD9-209ENST00000540891 LRP5O75197 1615 aa22.64■■□□□ 1.21
CD9-209ENST00000540891 U2AF1L5P0DN76 240 aaPredicted RBP22.63■■□□□ 1.21
CD9-209ENST00000540891 PRKAR2BP31323 418 aa22.63■■□□□ 1.21
CD9-209ENST00000540891 U2AF1Q01081 240 aaKnown RBP eCLIP22.63■■□□□ 1.21
CD9-209ENST00000540891 ZNF316A6NFI3 1004 aaPredicted RBP22.62■■□□□ 1.21
CD9-209ENST00000540891 PHACTR3Q96KR7 559 aa22.62■■□□□ 1.21
CD9-209ENST00000540891 SCN11AQ9UI33 1791 aa22.62■■□□□ 1.21
CD9-209ENST00000540891 ADAMTS7Q9UKP4 1686 aa22.62■■□□□ 1.21
CD9-209ENST00000540891 CABP4P57796 275 aa22.61■■□□□ 1.21
CD9-209ENST00000540891 LGR6Q9HBX8 967 aa22.61■■□□□ 1.21
CD9-209ENST00000540891 MRC1P22897 1456 aa22.6■■□□□ 1.21
CD9-209ENST00000540891 MYBBP1AQ9BQG0 1328 aaKnown RBP22.59■■□□□ 1.21
CD9-209ENST00000540891 RNMTO43148 476 aaKnown RBP22.59■■□□□ 1.21
CD9-209ENST00000540891 FCHSD2O94868 740 aa22.59■■□□□ 1.21
CD9-209ENST00000540891 NFATC2IPQ8NCF5 419 aa22.59■■□□□ 1.21
CD9-209ENST00000540891 C5P01031 1676 aa22.58■■□□□ 1.21
CD9-209ENST00000540891 LOC102724428A0A0B4J2F2 783 aa22.58■■□□□ 1.21
CD9-209ENST00000540891 SIK1P57059 783 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms