RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ZBTB7BO15156 539 aaPredicted RBP17.49■□□□□ 0.39
RTN3-210ENST00000540798 MCM10Q7L590 875 aa17.49■□□□□ 0.39
RTN3-210ENST00000540798 TRPM3Q9HCF6 1732 aaPredicted RBP17.48■□□□□ 0.39
RTN3-210ENST00000540798 ABTB2Q8N961 1025 aa17.48■□□□□ 0.39
RTN3-210ENST00000540798 RGS12O14924 1447 aa17.48■□□□□ 0.39
RTN3-210ENST00000540798 HTATSF1O43719 755 aaKnown RBP17.47■□□□□ 0.39
RTN3-210ENST00000540798 CHMP4BQ9H444 224 aaKnown RBP17.47■□□□□ 0.39
RTN3-210ENST00000540798 SLIT3O75094 1523 aa17.47■□□□□ 0.39
RTN3-210ENST00000540798 USP19O94966 1318 aa17.47■□□□□ 0.39
RTN3-210ENST00000540798 ELL2O00472 640 aaPredicted RBP17.47■□□□□ 0.39
RTN3-210ENST00000540798 HAP1P54257 671 aaPredicted RBP17.47■□□□□ 0.39
RTN3-210ENST00000540798 KIF1AQ12756 1690 aa17.46■□□□□ 0.39
RTN3-210ENST00000540798 GAS2L2Q8NHY3 880 aa17.46■□□□□ 0.39
RTN3-210ENST00000540798 API5Q9BZZ5 524 aaKnown RBP17.46■□□□□ 0.39
RTN3-210ENST00000540798 FOXO3O43524 673 aa17.45■□□□□ 0.38
RTN3-210ENST00000540798 NUTM2GQ5VZR2 741 aa17.44■□□□□ 0.38
RTN3-210ENST00000540798 RTN4Q9NQC3 1192 aaKnown RBP17.44■□□□□ 0.38
RTN3-210ENST00000540798 UBE2Q2Q8WVN8 375 aa17.43■□□□□ 0.38
RTN3-210ENST00000540798 MST1RQ04912 1400 aa17.43■□□□□ 0.38
RTN3-210ENST00000540798 RBM33Q96EV2 1170 aaKnown RBP17.43■□□□□ 0.38
RTN3-210ENST00000540798 FAM208AQ9UK61 1670 aaKnown RBP17.43■□□□□ 0.38
RTN3-210ENST00000540798 CAMTA1Q9Y6Y1 1673 aa17.43■□□□□ 0.38
RTN3-210ENST00000540798 MSH6P52701 1360 aa17.42■□□□□ 0.38
RTN3-210ENST00000540798 IP6K1Q92551 441 aa17.42■□□□□ 0.38
RTN3-210ENST00000540798 KRT24Q2M2I5 525 aa17.42■□□□□ 0.38
RTN3-210ENST00000540798 RGPD2P0DJD1 1756 aa17.42■□□□□ 0.38
RTN3-210ENST00000540798 NUCB1Q02818 461 aa17.41■□□□□ 0.38
RTN3-210ENST00000540798 INTS3Q68E01 1043 aaKnown RBP17.41■□□□□ 0.38
RTN3-210ENST00000540798 MED1Q15648 1581 aaPredicted RBP17.41■□□□□ 0.38
RTN3-210ENST00000540798 NCAPD2Q15021 1401 aa17.41■□□□□ 0.38
RTN3-210ENST00000540798 ESCO1Q5FWF5 840 aa17.41■□□□□ 0.38
RTN3-210ENST00000540798 SEC24BO95487 1268 aa17.41■□□□□ 0.38
RTN3-210ENST00000540798 RTF1Q92541 710 aaKnown RBP17.41■□□□□ 0.38
RTN3-210ENST00000540798 PTPRCP08575 1304 aa17.4■□□□□ 0.38
RTN3-210ENST00000540798 N4BP2Q86UW6 1770 aaPredicted RBP17.4■□□□□ 0.38
RTN3-210ENST00000540798 LMO7Q8WWI1 1683 aa17.4■□□□□ 0.38
RTN3-210ENST00000540798 CACNA1FO60840 1977 aa17.4■□□□□ 0.38
RTN3-210ENST00000540798 STRCP1A6NGW2 1772 aa17.4■□□□□ 0.38
RTN3-210ENST00000540798 MAP3K5Q99683 1374 aa17.4■□□□□ 0.38
RTN3-210ENST00000540798 ALS2Q96Q42 1657 aa17.39■□□□□ 0.38
RTN3-210ENST00000540798 KCNH5Q8NCM2 988 aa17.39■□□□□ 0.37
RTN3-210ENST00000540798 PSME1Q06323 249 aa17.39■□□□□ 0.37
RTN3-210ENST00000540798 GNAT3A8MTJ3 354 aa17.38■□□□□ 0.37
RTN3-210ENST00000540798 SIRT2Q8IXJ6 389 aa17.38■□□□□ 0.37
RTN3-210ENST00000540798 BABAM1Q9NWV8 329 aa17.38■□□□□ 0.37
RTN3-210ENST00000540798 GCC1Q96CN9 775 aa17.38■□□□□ 0.37
RTN3-210ENST00000540798 C1orf167Q5SNV9 1468 aa17.38■□□□□ 0.37
RTN3-210ENST00000540798 TSPYL4Q9UJ04 414 aa17.37■□□□□ 0.37
RTN3-210ENST00000540798 ORAI2Q96SN7 254 aa17.36■□□□□ 0.37
RTN3-210ENST00000540798 KDM3BQ7LBC6 1761 aa17.36■□□□□ 0.37
RTN3-210ENST00000540798 SOS1Q07889 1333 aaPredicted RBP17.36■□□□□ 0.37
RTN3-210ENST00000540798 ATP10DQ9P241 1426 aa17.35■□□□□ 0.37
RTN3-210ENST00000540798 CEMIPQ8WUJ3 1361 aa17.35■□□□□ 0.37
RTN3-210ENST00000540798 CHD1LQ86WJ1 897 aa17.35■□□□□ 0.37
RTN3-210ENST00000540798 MIS18AQ9NYP9 233 aa17.35■□□□□ 0.37
RTN3-210ENST00000540798 C14orf37Q86TY3 774 aa17.35■□□□□ 0.37
RTN3-210ENST00000540798 IL17REQ8NFR9 667 aa17.35■□□□□ 0.37
RTN3-210ENST00000540798 NCOA3Q9Y6Q9 1424 aa17.34■□□□□ 0.37
RTN3-210ENST00000540798 DCCP43146 1447 aa17.34■□□□□ 0.37
RTN3-210ENST00000540798 C1orf115Q9H7X2 142 aa17.34■□□□□ 0.37
RTN3-210ENST00000540798 NBPF6Q5VWK0 638 aa17.33■□□□□ 0.36
RTN3-210ENST00000540798 ARHGEF25Q86VW2 580 aa17.33■□□□□ 0.36
RTN3-210ENST00000540798 NBPF4Q96M43 638 aa17.33■□□□□ 0.36
RTN3-210ENST00000540798 TBC1D32Q96NH3 1257 aa17.33■□□□□ 0.36
RTN3-210ENST00000540798 LMTK3Q96Q04 1460 aa17.33■□□□□ 0.36
RTN3-210ENST00000540798 C19orf44Q9H6X5 657 aa17.32■□□□□ 0.36
RTN3-210ENST00000540798 PROSER2Q86WR7 435 aaPredicted RBP17.32■□□□□ 0.36
RTN3-210ENST00000540798 LTV1Q96GA3 475 aaPredicted RBP17.32■□□□□ 0.36
RTN3-210ENST00000540798 SLC4A2P04920 1241 aa17.32■□□□□ 0.36
RTN3-210ENST00000540798 IL27Q8NEV9 243 aa17.32■□□□□ 0.36
RTN3-210ENST00000540798 GCP02774 474 aa17.31■□□□□ 0.36
RTN3-210ENST00000540798 ADAMTS7Q9UKP4 1686 aa17.31■□□□□ 0.36
RTN3-210ENST00000540798 USHBP1Q8N6Y0 703 aa17.31■□□□□ 0.36
RTN3-210ENST00000540798 RGPD5Q99666 1765 aa17.31■□□□□ 0.36
RTN3-210ENST00000540798 CRYBG1Q9Y4K1 1723 aa17.3■□□□□ 0.36
RTN3-210ENST00000540798 TAF7Q15545 349 aaPredicted RBP17.3■□□□□ 0.36
RTN3-210ENST00000540798 ANKRD44Q8N8A2 993 aa17.3■□□□□ 0.36
RTN3-210ENST00000540798 LNPKQ9C0E8 428 aa17.3■□□□□ 0.36
RTN3-210ENST00000540798 OVOS2A0A0G2JMS6 1433 aa17.29■□□□□ 0.36
RTN3-210ENST00000540798 SIPA1L3O60292 1781 aaPredicted RBP17.29■□□□□ 0.36
RTN3-210ENST00000540798 G2E3Q7L622 706 aa17.29■□□□□ 0.36
RTN3-210ENST00000540798 DCTPP1Q9H773 170 aa17.29■□□□□ 0.36
RTN3-210ENST00000540798 KRT28Q7Z3Y7 464 aa17.28■□□□□ 0.36
RTN3-210ENST00000540798 PXDNLA1KZ92 1463 aa17.28■□□□□ 0.36
RTN3-210ENST00000540798 PLEKHG5O94827 1062 aa17.28■□□□□ 0.36
RTN3-210ENST00000540798 NBR1Q14596 966 aa17.28■□□□□ 0.36
RTN3-210ENST00000540798 BMP2KLQ5H9B9 411 aa17.28■□□□□ 0.36
RTN3-210ENST00000540798 RPAP2Q8IXW5 612 aaPredicted RBP17.28■□□□□ 0.36
RTN3-210ENST00000540798 UPF2Q9HAU5 1272 aaKnown RBP17.27■□□□□ 0.36
RTN3-210ENST00000540798 COL18A1P39060 1754 aa17.27■□□□□ 0.36
RTN3-210ENST00000540798 XIRP1Q702N8 1843 aaKnown RBP17.27■□□□□ 0.36
RTN3-210ENST00000540798 ANKRD45Q5TZF3 282 aa17.27■□□□□ 0.36
RTN3-210ENST00000540798 CCDC30Q5VVM6 783 aa17.27■□□□□ 0.35
RTN3-210ENST00000540798 CEP85Q6P2H3 762 aa17.27■□□□□ 0.35
RTN3-210ENST00000540798 EIF5BO60841 1220 aaKnown RBP17.26■□□□□ 0.35
RTN3-210ENST00000540798 SLC4A3P48751 1232 aa17.26■□□□□ 0.35
RTN3-210ENST00000540798 TMEM94Q12767 1356 aa17.26■□□□□ 0.35
RTN3-210ENST00000540798 CCT4P50991 539 aaKnown RBP17.26■□□□□ 0.35
RTN3-210ENST00000540798 XPCQ01831 940 aaPredicted RBP17.26■□□□□ 0.35
RTN3-210ENST00000540798 ABCC6O95255 1503 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 95.4 ms