RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 ANO8Q9HCE9 1232 aaPredicted RBP16.88■□□□□ 0.29
USP3-204ENST00000540797 CHD1LQ86WJ1 897 aa16.88■□□□□ 0.29
USP3-204ENST00000540797 LRP2BPQ9P2M1 347 aa16.88■□□□□ 0.29
USP3-204ENST00000540797 SASS6Q6UVJ0 657 aa16.87■□□□□ 0.29
USP3-204ENST00000540797 KIAA0556O60303 1618 aa16.87■□□□□ 0.29
USP3-204ENST00000540797 ATP2B1P20020 1258 aa16.87■□□□□ 0.29
USP3-204ENST00000540797 SPINK5Q9NQ38 1064 aaPredicted RBP16.87■□□□□ 0.29
USP3-204ENST00000540797 NPHP3Q7Z494 1330 aa16.87■□□□□ 0.29
USP3-204ENST00000540797 MCM2P49736 904 aa16.87■□□□□ 0.29
USP3-204ENST00000540797 ABCC10Q5T3U5 1492 aa16.87■□□□□ 0.29
USP3-204ENST00000540797 ITSN2Q9NZM3 1697 aa16.87■□□□□ 0.29
USP3-204ENST00000540797 ZSCAN29Q8IWY8 852 aaPredicted RBP16.87■□□□□ 0.29
USP3-204ENST00000540797 HSP90AB3PQ58FF7 597 aa16.86■□□□□ 0.29
USP3-204ENST00000540797 RABEP1Q15276 862 aa16.86■□□□□ 0.29
USP3-204ENST00000540797 IPO7O95373 1038 aaKnown RBP16.86■□□□□ 0.29
USP3-204ENST00000540797 CYP46A1Q9Y6A2 500 aa16.86■□□□□ 0.29
USP3-204ENST00000540797 DISP3Q9P2K9 1392 aa16.85■□□□□ 0.29
USP3-204ENST00000540797 ALDH1L2Q3SY69 923 aa16.85■□□□□ 0.29
USP3-204ENST00000540797 TRMT112Q9UI30 125 aaKnown RBP16.85■□□□□ 0.29
USP3-204ENST00000540797 IDH1O75874 414 aaKnown RBP16.85■□□□□ 0.29
USP3-204ENST00000540797 PDCP20941 246 aa16.85■□□□□ 0.29
USP3-204ENST00000540797 HYPKQ9NX55 129 aa16.85■□□□□ 0.29
USP3-204ENST00000540797 DBF4Q9UBU7 674 aaPredicted RBP16.85■□□□□ 0.29
USP3-204ENST00000540797 TTC21AQ8NDW8 1320 aa16.84■□□□□ 0.29
USP3-204ENST00000540797 TDO2P48775 406 aa16.84■□□□□ 0.29
USP3-204ENST00000540797 AKAP2Q9Y2D5 859 aa16.84■□□□□ 0.29
USP3-204ENST00000540797 HSPA2P54652 639 aa16.84■□□□□ 0.29
USP3-204ENST00000540797 SSH1Q8WYL5 1049 aa16.84■□□□□ 0.29
USP3-204ENST00000540797 A0A0U1RQG5 324 aaPredicted RBP16.84■□□□□ 0.29
USP3-204ENST00000540797 ABCF2Q9UG63 623 aa16.84■□□□□ 0.29
USP3-204ENST00000540797 EXOC6BQ9Y2D4 811 aa16.84■□□□□ 0.29
USP3-204ENST00000540797 EIF4G3O43432 1585 aaKnown RBP16.83■□□□□ 0.29
USP3-204ENST00000540797 TEX13AQ9BXU3 409 aaPredicted RBP16.83■□□□□ 0.29
USP3-204ENST00000540797 CCDC69A6NI79 296 aa16.83■□□□□ 0.29
USP3-204ENST00000540797 ANKRD36BQ8N2N9 1353 aa16.83■□□□□ 0.28
USP3-204ENST00000540797 DNAAF4Q8WXU2 420 aa16.83■□□□□ 0.28
USP3-204ENST00000540797 CTNNA3Q9UI47 895 aa16.83■□□□□ 0.28
USP3-204ENST00000540797 IFIT1P09914 478 aaKnown RBP16.83■□□□□ 0.28
USP3-204ENST00000540797 SDF4Q9BRK5 362 aa16.83■□□□□ 0.28
USP3-204ENST00000540797 NUTM1Q86Y26 1132 aa16.82■□□□□ 0.28
USP3-204ENST00000540797 CAVIN4Q5BKX8 364 aa16.82■□□□□ 0.28
USP3-204ENST00000540797 KIF1BPQ96EK5 621 aa16.82■□□□□ 0.28
USP3-204ENST00000540797 FANCIQ9NVI1 1328 aa16.82■□□□□ 0.28
USP3-204ENST00000540797 ANKRD1Q15327 319 aa16.82■□□□□ 0.28
USP3-204ENST00000540797 TRIM22Q8IYM9 498 aa16.82■□□□□ 0.28
USP3-204ENST00000540797 TMOD2Q9NZR1 351 aa16.82■□□□□ 0.28
USP3-204ENST00000540797 ABCC2Q92887 1545 aa16.82■□□□□ 0.28
USP3-204ENST00000540797 KIF21AQ7Z4S6 1674 aa16.82■□□□□ 0.28
USP3-204ENST00000540797 IFIT5Q13325 482 aaKnown RBP16.82■□□□□ 0.28
USP3-204ENST00000540797 CTTNBP2Q8WZ74 1663 aa16.82■□□□□ 0.28
USP3-204ENST00000540797 CWC27Q6UX04 472 aaKnown RBP16.81■□□□□ 0.28
USP3-204ENST00000540797 ANKIB1Q9P2G1 1089 aa16.81■□□□□ 0.28
USP3-204ENST00000540797 R3HCC1Q9Y3T6 440 aaKnown RBP16.81■□□□□ 0.28
USP3-204ENST00000540797 NUP133Q8WUM0 1156 aa16.81■□□□□ 0.28
USP3-204ENST00000540797 AK7Q96M32 723 aa16.81■□□□□ 0.28
USP3-204ENST00000540797 F6X3S4 739 aa16.81■□□□□ 0.28
USP3-204ENST00000540797 RARSP54136 660 aaKnown RBP16.81■□□□□ 0.28
USP3-204ENST00000540797 ZBTB3Q9H5J0 574 aa16.81■□□□□ 0.28
USP3-204ENST00000540797 NCKAP5LQ9HCH0 1330 aa16.81■□□□□ 0.28
USP3-204ENST00000540797 STK3Q13188 491 aa16.8■□□□□ 0.28
USP3-204ENST00000540797 AIDAQ96BJ3 306 aa16.8■□□□□ 0.28
USP3-204ENST00000540797 CDK5RAP3Q96JB5 506 aa16.8■□□□□ 0.28
USP3-204ENST00000540797 PTPRKQ15262 1439 aa16.8■□□□□ 0.28
USP3-204ENST00000540797 PPIP5K1Q6PFW1 1433 aa16.8■□□□□ 0.28
USP3-204ENST00000540797 ZMYM3Q14202 1370 aa16.8■□□□□ 0.28
USP3-204ENST00000540797 RAB11FIP3O75154 756 aa16.8■□□□□ 0.28
USP3-204ENST00000540797 RPGRQ92834 1020 aaKnown RBP16.8■□□□□ 0.28
USP3-204ENST00000540797 GPTP24298 496 aa16.8■□□□□ 0.28
USP3-204ENST00000540797 OLFM4Q6UX06 510 aa16.8■□□□□ 0.28
USP3-204ENST00000540797 UBAC1Q9BSL1 405 aa16.79■□□□□ 0.28
USP3-204ENST00000540797 C19orf44Q9H6X5 657 aa16.79■□□□□ 0.28
USP3-204ENST00000540797 FBLN1P23142 703 aa16.79■□□□□ 0.28
USP3-204ENST00000540797 GSE1Q14687 1217 aa16.79■□□□□ 0.28
USP3-204ENST00000540797 A0A087WZG4 1122 aa16.79■□□□□ 0.28
USP3-204ENST00000540797 CNKSR2Q8WXI2 1034 aa16.79■□□□□ 0.28
USP3-204ENST00000540797 TXLNAP40222 546 aa16.78■□□□□ 0.28
USP3-204ENST00000540797 HSP90AB2PQ58FF8 381 aa16.78■□□□□ 0.28
USP3-204ENST00000540797 BLOC1S2Q6QNY1 142 aa16.78■□□□□ 0.28
USP3-204ENST00000540797 ZNF396Q96N95 335 aaPredicted RBP16.78■□□□□ 0.28
USP3-204ENST00000540797 CCAR2Q8N163 923 aaKnown RBP16.78■□□□□ 0.28
USP3-204ENST00000540797 SOGA3Q5TF21 947 aa16.78■□□□□ 0.28
USP3-204ENST00000540797 ZCRB1Q8TBF4 217 aaKnown RBP16.78■□□□□ 0.28
USP3-204ENST00000540797 BCL11BQ9C0K0 894 aaPredicted RBP16.78■□□□□ 0.28
USP3-204ENST00000540797 WDR62O43379 1518 aa16.78■□□□□ 0.28
USP3-204ENST00000540797 ANKRD18BA2A2Z9 1011 aa16.77■□□□□ 0.28
USP3-204ENST00000540797 FLIIQ13045 1269 aa16.77■□□□□ 0.28
USP3-204ENST00000540797 GOLGA6L1Q8N7Z2 621 aa16.77■□□□□ 0.28
USP3-204ENST00000540797 STK38Q15208 465 aa16.77■□□□□ 0.27
USP3-204ENST00000540797 C8orf37Q96NL8 207 aa16.77■□□□□ 0.27
USP3-204ENST00000540797 FAM83GA6ND36 823 aa16.76■□□□□ 0.27
USP3-204ENST00000540797 NUP160Q12769 1436 aa16.76■□□□□ 0.27
USP3-204ENST00000540797 GLRX3O76003 335 aaKnown RBP16.76■□□□□ 0.27
USP3-204ENST00000540797 SNRPA1P09661 255 aaKnown RBP16.76■□□□□ 0.27
USP3-204ENST00000540797 NAT10Q9H0A0 1025 aaKnown RBP16.76■□□□□ 0.27
USP3-204ENST00000540797 TMEM132AQ24JP5 1023 aa16.76■□□□□ 0.27
USP3-204ENST00000540797 EPS15P42566 896 aa16.76■□□□□ 0.27
USP3-204ENST00000540797 MX1P20591 662 aa16.75■□□□□ 0.27
USP3-204ENST00000540797 SLC5A1P13866 664 aa16.75■□□□□ 0.27
USP3-204ENST00000540797 KRT32Q14532 448 aa16.75■□□□□ 0.27
USP3-204ENST00000540797 MAP3K2Q9Y2U5 619 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms