RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SEMA3FQ13275 785 aa11.5□□□□□ -0.57
CLIP1-214ENST00000540539 CREBRFQ8IUR6 639 aa11.5□□□□□ -0.57
CLIP1-214ENST00000540539 SNX21Q969T3 373 aa11.5□□□□□ -0.57
CLIP1-214ENST00000540539 NOS1P29475 1434 aa11.5□□□□□ -0.57
CLIP1-214ENST00000540539 RIMS1Q86UR5 1692 aaKnown RBP11.5□□□□□ -0.57
CLIP1-214ENST00000540539 GOLIM4O00461 696 aa11.5□□□□□ -0.57
CLIP1-214ENST00000540539 DUSP27Q5VZP5 1158 aa11.5□□□□□ -0.57
CLIP1-214ENST00000540539 NFATC2IPQ8NCF5 419 aa11.5□□□□□ -0.57
CLIP1-214ENST00000540539 CHAF1AQ13111 956 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-214ENST00000540539 NLRP13Q86W25 1043 aa11.49□□□□□ -0.57
CLIP1-214ENST00000540539 RNF214Q8ND24 703 aa11.49□□□□□ -0.57
CLIP1-214ENST00000540539 DONSONQ9NYP3 566 aa11.49□□□□□ -0.57
CLIP1-214ENST00000540539 ERVK-7P63135 1459 aa11.49□□□□□ -0.57
CLIP1-214ENST00000540539 UGGT1Q9NYU2 1555 aa11.49□□□□□ -0.57
CLIP1-214ENST00000540539 C3P01024 1663 aa11.49□□□□□ -0.57
CLIP1-214ENST00000540539 CLTCL1P53675 1640 aa11.49□□□□□ -0.57
CLIP1-214ENST00000540539 SYNMO15061 1565 aa11.49□□□□□ -0.57
CLIP1-214ENST00000540539 SLC4A2P04920 1241 aa11.49□□□□□ -0.57
CLIP1-214ENST00000540539 CEBPAP49715 358 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-214ENST00000540539 SRPK2P78362 688 aaKnown RBP11.49□□□□□ -0.57
CLIP1-214ENST00000540539 DNAJC21Q5F1R6 531 aaKnown RBP11.49□□□□□ -0.57
CLIP1-214ENST00000540539 TTC12Q9H892 705 aaPredicted RBP11.49□□□□□ -0.57
CLIP1-214ENST00000540539 ST7Q9NRC1 585 aa11.49□□□□□ -0.57
CLIP1-214ENST00000540539 ZNF446Q9NWS9 450 aa11.49□□□□□ -0.57
CLIP1-214ENST00000540539 CASQ1P31415 396 aa11.48□□□□□ -0.57
CLIP1-214ENST00000540539 LRSAM1Q6UWE0 723 aa11.48□□□□□ -0.57
CLIP1-214ENST00000540539 RBM27Q9P2N5 1060 aaKnown RBP11.48□□□□□ -0.57
CLIP1-214ENST00000540539 TRIM66O15016 1216 aa11.48□□□□□ -0.57
CLIP1-214ENST00000540539 MAP2K1Q02750 393 aaPredicted RBP11.48□□□□□ -0.57
CLIP1-214ENST00000540539 SYCP1Q15431 976 aa11.47□□□□□ -0.57
CLIP1-214ENST00000540539 TSGA10IPQ3SY00 556 aa11.47□□□□□ -0.57
CLIP1-214ENST00000540539 LMBRD1Q9NUN5 540 aa11.47□□□□□ -0.57
CLIP1-214ENST00000540539 POLKQ9UBT6 870 aa11.47□□□□□ -0.57
CLIP1-214ENST00000540539 SPATA31D1Q6ZQQ2 1576 aa11.47□□□□□ -0.57
CLIP1-214ENST00000540539 SGSM3Q96HU1 749 aa11.47□□□□□ -0.57
CLIP1-214ENST00000540539 FAM53CQ9NYF3 392 aa11.47□□□□□ -0.57
CLIP1-214ENST00000540539 MCTP1Q6DN14 999 aa11.46□□□□□ -0.57
CLIP1-214ENST00000540539 C10orf67Q8IYJ2 551 aa11.46□□□□□ -0.57
CLIP1-214ENST00000540539 KIF1BO60333 1816 aa11.46□□□□□ -0.57
CLIP1-214ENST00000540539 RAD50Q92878 1312 aa11.46□□□□□ -0.58
CLIP1-214ENST00000540539 SYCE3A1L190 88 aa11.46□□□□□ -0.58
CLIP1-214ENST00000540539 REC8O95072 547 aa11.46□□□□□ -0.58
CLIP1-214ENST00000540539 CLUAP1Q96AJ1 413 aa11.46□□□□□ -0.58
CLIP1-214ENST00000540539 PIK3C2BO00750 1634 aa11.46□□□□□ -0.58
CLIP1-214ENST00000540539 INSRP06213 1382 aa11.46□□□□□ -0.58
CLIP1-214ENST00000540539 TNNT1P13805 278 aa11.45□□□□□ -0.58
CLIP1-214ENST00000540539 SYT10Q6XYQ8 523 aa11.45□□□□□ -0.58
CLIP1-214ENST00000540539 AK9Q5TCS8 1911 aa11.45□□□□□ -0.58
CLIP1-214ENST00000540539 MYO1CO00159 1063 aa11.45□□□□□ -0.58
CLIP1-214ENST00000540539 IDI1Q13907 227 aa11.45□□□□□ -0.58
CLIP1-214ENST00000540539 NAA30Q147X3 362 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-214ENST00000540539 DRC1Q96MC2 740 aa11.45□□□□□ -0.58
CLIP1-214ENST00000540539 RAI14Q9P0K7 980 aa11.45□□□□□ -0.58
CLIP1-214ENST00000540539 PDZRN3Q9UPQ7 1066 aa11.45□□□□□ -0.58
CLIP1-214ENST00000540539 USP47Q96K76 1375 aa11.45□□□□□ -0.58
CLIP1-214ENST00000540539 RGL3Q3MIN7 710 aa11.44□□□□□ -0.58
CLIP1-214ENST00000540539 MUM1L1Q5H9M0 696 aa11.44□□□□□ -0.58
CLIP1-214ENST00000540539 GPT2Q8TD30 523 aa11.44□□□□□ -0.58
CLIP1-214ENST00000540539 ZNF592Q92610 1267 aa11.44□□□□□ -0.58
CLIP1-214ENST00000540539 JRKLQ9Y4A0 524 aa11.44□□□□□ -0.58
CLIP1-214ENST00000540539 TNRQ92752 1358 aa11.44□□□□□ -0.58
CLIP1-214ENST00000540539 CLSTN1O94985 981 aa11.44□□□□□ -0.58
CLIP1-214ENST00000540539 CXorf56Q9H5V9 222 aa11.44□□□□□ -0.58
CLIP1-214ENST00000540539 TMEM63CQ9P1W3 806 aa11.44□□□□□ -0.58
CLIP1-214ENST00000540539 LCMT1Q9UIC8 334 aa11.44□□□□□ -0.58
CLIP1-214ENST00000540539 CGNL1Q0VF96 1302 aa11.44□□□□□ -0.58
CLIP1-214ENST00000540539 CCDC189A1A4V9 331 aa11.43□□□□□ -0.58
CLIP1-214ENST00000540539 CHGAP10645 457 aaKnown RBP11.43□□□□□ -0.58
CLIP1-214ENST00000540539 SART3Q15020 963 aaKnown RBP11.43□□□□□ -0.58
CLIP1-214ENST00000540539 ATG3Q9NT62 314 aa11.43□□□□□ -0.58
CLIP1-214ENST00000540539 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-214ENST00000540539 GOLGA6L6A8MZA4 724 aa11.43□□□□□ -0.58
CLIP1-214ENST00000540539 CD2BP2O95400 341 aaKnown RBP11.43□□□□□ -0.58
CLIP1-214ENST00000540539 TDO2P48775 406 aa11.43□□□□□ -0.58
CLIP1-214ENST00000540539 NOL10Q9BSC4 688 aaKnown RBP11.43□□□□□ -0.58
CLIP1-214ENST00000540539 SUFUQ9UMX1 484 aa11.43□□□□□ -0.58
CLIP1-214ENST00000540539 PTPRMP28827 1452 aa11.43□□□□□ -0.58
CLIP1-214ENST00000540539 PARD3Q8TEW0 1356 aa11.42□□□□□ -0.58
CLIP1-214ENST00000540539 PLEKHH1Q9ULM0 1364 aa11.42□□□□□ -0.58
CLIP1-214ENST00000540539 KIF1CO43896 1103 aaKnown RBP11.42□□□□□ -0.58
CLIP1-214ENST00000540539 BCAR3O75815 825 aa11.42□□□□□ -0.58
CLIP1-214ENST00000540539 KIAA1524Q8TCG1 905 aa11.42□□□□□ -0.58
CLIP1-214ENST00000540539 KDM4FA0A1W2PPD8 638 aa11.41□□□□□ -0.58
CLIP1-214ENST00000540539 KMT5BQ4FZB7 885 aa11.41□□□□□ -0.58
CLIP1-214ENST00000540539 SETD1BQ9UPS6 1966 aaKnown RBP11.41□□□□□ -0.58
CLIP1-214ENST00000540539 ADGRB3O60242 1522 aa11.41□□□□□ -0.58
CLIP1-214ENST00000540539 MYO5BQ9ULV0 1848 aa11.41□□□□□ -0.58
CLIP1-214ENST00000540539 RBM6P78332 1123 aaKnown RBP11.41□□□□□ -0.58
CLIP1-214ENST00000540539 NEK11Q8NG66 645 aa11.41□□□□□ -0.58
CLIP1-214ENST00000540539 GAS2L2Q8NHY3 880 aa11.41□□□□□ -0.58
CLIP1-214ENST00000540539 MED4Q9NPJ6 270 aa11.41□□□□□ -0.58
CLIP1-214ENST00000540539 NEURL4Q96JN8 1562 aa11.41□□□□□ -0.58
CLIP1-214ENST00000540539 OS9Q13438 667 aaPredicted RBP11.4□□□□□ -0.58
CLIP1-214ENST00000540539 KIF1BPQ96EK5 621 aa11.4□□□□□ -0.58
CLIP1-214ENST00000540539 TMEM131LA2VDJ0 1609 aa11.4□□□□□ -0.58
CLIP1-214ENST00000540539 ATP2B1P20020 1258 aa11.4□□□□□ -0.58
CLIP1-214ENST00000540539 FAM212AQ96EL1 285 aa11.4□□□□□ -0.58
CLIP1-214ENST00000540539 STAG3Q9UJ98 1225 aa11.4□□□□□ -0.58
CLIP1-214ENST00000540539 K7ELQ4 463 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-214ENST00000540539 ZNF853P0CG23 659 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms