RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 HSP90AA1P07900 732 aaKnown RBP21.11■□□□□ 0.97
USP28-208ENST00000540438 NCBP3Q53F19 620 aaKnown RBP21.11■□□□□ 0.97
USP28-208ENST00000540438 ESCO1Q5FWF5 840 aa21.11■□□□□ 0.97
USP28-208ENST00000540438 RIMS1Q86UR5 1692 aaKnown RBP21.11■□□□□ 0.97
USP28-208ENST00000540438 FKBP5Q13451 457 aaPredicted RBP21.1■□□□□ 0.97
USP28-208ENST00000540438 DLG5Q8TDM6 1919 aa21.1■□□□□ 0.97
USP28-208ENST00000540438 HSCBQ8IWL3 235 aa21.09■□□□□ 0.97
USP28-208ENST00000540438 THEMISQ8N1K5 641 aaPredicted RBP21.09■□□□□ 0.97
USP28-208ENST00000540438 HSP90AB1P08238 724 aaKnown RBP21.07■□□□□ 0.96
USP28-208ENST00000540438 PLEKHM2Q8IWE5 1019 aa21.07■□□□□ 0.96
USP28-208ENST00000540438 PLEKHG1Q9ULL1 1385 aa21.06■□□□□ 0.96
USP28-208ENST00000540438 KCNQ3O43525 872 aa21.06■□□□□ 0.96
USP28-208ENST00000540438 CEP85Q6P2H3 762 aa21.06■□□□□ 0.96
USP28-208ENST00000540438 ARHGAP45Q92619 1136 aa21.06■□□□□ 0.96
USP28-208ENST00000540438 NOL8Q76FK4 1167 aaKnown RBP21.06■□□□□ 0.96
USP28-208ENST00000540438 IL17REQ8NFR9 667 aa21.06■□□□□ 0.96
USP28-208ENST00000540438 GCC1Q96CN9 775 aa21.06■□□□□ 0.96
USP28-208ENST00000540438 PHAXQ9H814 394 aaKnown RBP21.06■□□□□ 0.96
USP28-208ENST00000540438 LGR6Q9HBX8 967 aa21.06■□□□□ 0.96
USP28-208ENST00000540438 HOXC9P31274 260 aa21.05■□□□□ 0.96
USP28-208ENST00000540438 DDX17Q92841 729 aaKnown RBP21.05■□□□□ 0.96
USP28-208ENST00000540438 ORAI2Q96SN7 254 aa21.05■□□□□ 0.96
USP28-208ENST00000540438 RGPD8O14715 1765 aaPredicted RBP21.04■□□□□ 0.96
USP28-208ENST00000540438 DTNBO60941 627 aa21.04■□□□□ 0.96
USP28-208ENST00000540438 PSME1Q06323 249 aa21.04■□□□□ 0.96
USP28-208ENST00000540438 OVOS2A0A0J9YW53 1432 aa21.04■□□□□ 0.96
USP28-208ENST00000540438 OVOS2Q6IE36 1432 aa21.04■□□□□ 0.96
USP28-208ENST00000540438 MAP4K4O95819 1239 aaPredicted RBP21.03■□□□□ 0.96
USP28-208ENST00000540438 BMP2KLQ5H9B9 411 aa21.03■□□□□ 0.96
USP28-208ENST00000540438 SIRT1Q96EB6 747 aa21.03■□□□□ 0.96
USP28-208ENST00000540438 TBX22Q9Y458 520 aa21.03■□□□□ 0.96
USP28-208ENST00000540438 UBR1Q8IWV7 1749 aa21.03■□□□□ 0.96
USP28-208ENST00000540438 FOXD4L5Q5VV16 416 aaPredicted RBP21.03■□□□□ 0.96
USP28-208ENST00000540438 FOXD4L4Q8WXT5 416 aaPredicted RBP21.03■□□□□ 0.96
USP28-208ENST00000540438 PTCH1Q13635 1447 aa21.02■□□□□ 0.96
USP28-208ENST00000540438 CEP170BQ9Y4F5 1589 aaPredicted RBP21.02■□□□□ 0.96
USP28-208ENST00000540438 TECPR2O15040 1411 aa21.02■□□□□ 0.96
USP28-208ENST00000540438 MPRIPQ6WCQ1 1025 aa21.02■□□□□ 0.96
USP28-208ENST00000540438 KIF2CQ99661 725 aa21.02■□□□□ 0.96
USP28-208ENST00000540438 IL1RAPL2Q9NP60 686 aa21.02■□□□□ 0.96
USP28-208ENST00000540438 PEAK1Q9H792 1746 aa21.02■□□□□ 0.95
USP28-208ENST00000540438 CHAMP1Q96JM3 812 aa21.02■□□□□ 0.95
USP28-208ENST00000540438 STK31Q9BXU1 1019 aa21.02■□□□□ 0.95
USP28-208ENST00000540438 PNMA6EA0A0J9YXQ4 647 aa21.01■□□□□ 0.95
USP28-208ENST00000540438 NBPF6Q5VWK0 638 aa21.01■□□□□ 0.95
USP28-208ENST00000540438 NBPF4Q96M43 638 aa21.01■□□□□ 0.95
USP28-208ENST00000540438 PIK3R4Q99570 1358 aa21.01■□□□□ 0.95
USP28-208ENST00000540438 DCTPP1Q9H773 170 aa21.01■□□□□ 0.95
USP28-208ENST00000540438 BRPF1P55201 1214 aaPredicted RBP21■□□□□ 0.95
USP28-208ENST00000540438 INTS3Q68E01 1043 aaKnown RBP21■□□□□ 0.95
USP28-208ENST00000540438 FLT4P35916 1363 aa21■□□□□ 0.95
USP28-208ENST00000540438 GNAT3A8MTJ3 354 aa20.99■□□□□ 0.95
USP28-208ENST00000540438 SDSP20132 328 aa20.99■□□□□ 0.95
USP28-208ENST00000540438 ANKRD44Q8N8A2 993 aa20.99■□□□□ 0.95
USP28-208ENST00000540438 PHF8Q9UPP1 1060 aa20.99■□□□□ 0.95
USP28-208ENST00000540438 REREQ9P2R6 1566 aa20.99■□□□□ 0.95
USP28-208ENST00000540438 FLIIQ13045 1269 aa20.99■□□□□ 0.95
USP28-208ENST00000540438 TPRNQ4KMQ1 711 aa20.99■□□□□ 0.95
USP28-208ENST00000540438 C3P01024 1663 aa20.98■□□□□ 0.95
USP28-208ENST00000540438 RTL1A6NKG5 1358 aa20.98■□□□□ 0.95
USP28-208ENST00000540438 ITSN1Q15811 1721 aa20.98■□□□□ 0.95
USP28-208ENST00000540438 CRB1P82279 1406 aa20.98■□□□□ 0.95
USP28-208ENST00000540438 PRAMEF22A3QJZ6 481 aa20.97■□□□□ 0.95
USP28-208ENST00000540438 RILPL2Q969X0 211 aa20.97■□□□□ 0.95
USP28-208ENST00000540438 MCM4P33991 863 aa20.97■□□□□ 0.95
USP28-208ENST00000540438 GAS2L2Q8NHY3 880 aa20.97■□□□□ 0.95
USP28-208ENST00000540438 LRRFIP2Q9Y608 721 aaKnown RBP20.97■□□□□ 0.95
USP28-208ENST00000540438 RGS12O14924 1447 aa20.97■□□□□ 0.95
USP28-208ENST00000540438 ZC3H6P61129 1189 aaKnown RBP20.96■□□□□ 0.95
USP28-208ENST00000540438 VIRMAQ69YN4 1812 aaKnown RBP20.96■□□□□ 0.95
USP28-208ENST00000540438 CDC45O75419 566 aa20.96■□□□□ 0.95
USP28-208ENST00000540438 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.96■□□□□ 0.95
USP28-208ENST00000540438 MON2Q7Z3U7 1717 aa20.95■□□□□ 0.94
USP28-208ENST00000540438 SBNO1A3KN83 1393 aa20.95■□□□□ 0.94
USP28-208ENST00000540438 TTC22Q5TAA0 569 aa20.95■□□□□ 0.94
USP28-208ENST00000540438 HDGFL1Q5TGJ6 251 aa20.95■□□□□ 0.94
USP28-208ENST00000540438 PANK2Q9BZ23 570 aa20.95■□□□□ 0.94
USP28-208ENST00000540438 TRIM6-TRIM34B2RNG4 842 aa20.94■□□□□ 0.94
USP28-208ENST00000540438 CHMP5Q9NZZ3 219 aa20.94■□□□□ 0.94
USP28-208ENST00000540438 FOXD4L6Q3SYB3 417 aaPredicted RBP20.94■□□□□ 0.94
USP28-208ENST00000540438 FOXD4L3Q6VB84 417 aaPredicted RBP20.94■□□□□ 0.94
USP28-208ENST00000540438 NUTM1Q86Y26 1132 aa20.94■□□□□ 0.94
USP28-208ENST00000540438 IGSF1Q8N6C5 1336 aa20.94■□□□□ 0.94
USP28-208ENST00000540438 PIP4K2AP48426 406 aaPredicted RBP20.94■□□□□ 0.94
USP28-208ENST00000540438 KNDC1Q76NI1 1749 aa20.93■□□□□ 0.94
USP28-208ENST00000540438 CHMP4BQ9H444 224 aaKnown RBP20.93■□□□□ 0.94
USP28-208ENST00000540438 TTC21AQ8NDW8 1320 aa20.92■□□□□ 0.94
USP28-208ENST00000540438 SSFA2P28290 1259 aa20.92■□□□□ 0.94
USP28-208ENST00000540438 RBM25P49756 843 aaKnown RBP20.92■□□□□ 0.94
USP28-208ENST00000540438 PKP1Q13835 747 aa20.92■□□□□ 0.94
USP28-208ENST00000540438 TNPO1Q92973 898 aaKnown RBP20.92■□□□□ 0.94
USP28-208ENST00000540438 ATP10DQ9P241 1426 aa20.92■□□□□ 0.94
USP28-208ENST00000540438 USP31Q70CQ4 1352 aa20.92■□□□□ 0.94
USP28-208ENST00000540438 TRAK2O60296 914 aa20.91■□□□□ 0.94
USP28-208ENST00000540438 CABLES1Q8TDN4 633 aa20.91■□□□□ 0.94
USP28-208ENST00000540438 AIMP1Q12904 312 aaKnown RBP20.91■□□□□ 0.94
USP28-208ENST00000540438 LARP6Q9BRS8 491 aaKnown RBP20.91■□□□□ 0.94
USP28-208ENST00000540438 CHPF2Q9P2E5 772 aa20.91■□□□□ 0.94
USP28-208ENST00000540438 SSH2Q76I76 1423 aa20.9■□□□□ 0.94
USP28-208ENST00000540438 ANKLE2Q86XL3 938 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms