RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 KCNQ2O43526 872 aa24.88■■□□□ 1.57
SNRPA1-203ENST00000540017 TATP17735 454 aaPredicted RBP24.88■■□□□ 1.57
SNRPA1-203ENST00000540017 ZEB1P37275 1124 aaPredicted RBP24.88■■□□□ 1.57
SNRPA1-203ENST00000540017 MTHFSP49914 203 aa24.88■■□□□ 1.57
SNRPA1-203ENST00000540017 EZH2Q15910 746 aaKnown RBP24.88■■□□□ 1.57
SNRPA1-203ENST00000540017 ACSBG1Q96GR2 724 aa24.87■■□□□ 1.57
SNRPA1-203ENST00000540017 BCL11BQ9C0K0 894 aaPredicted RBP24.87■■□□□ 1.57
SNRPA1-203ENST00000540017 IGSF1Q8N6C5 1336 aa24.86■■□□□ 1.57
SNRPA1-203ENST00000540017 NHSQ6T4R5 1651 aa24.83■■□□□ 1.57
SNRPA1-203ENST00000540017 IL13P35225 146 aa24.83■■□□□ 1.57
SNRPA1-203ENST00000540017 PKD1L3Q7Z443 1732 aa24.81■■□□□ 1.56
SNRPA1-203ENST00000540017 CYP27B1O15528 508 aa24.8■■□□□ 1.56
SNRPA1-203ENST00000540017 AEBP1Q8IUX7 1158 aa24.79■■□□□ 1.56
SNRPA1-203ENST00000540017 RREB1Q92766 1687 aa24.78■■□□□ 1.56
SNRPA1-203ENST00000540017 PLSCR1O15162 318 aa24.78■■□□□ 1.56
SNRPA1-203ENST00000540017 PCDH11XQ9BZA7 1347 aa24.78■■□□□ 1.56
SNRPA1-203ENST00000540017 PCDH11YQ9BZA8 1340 aa24.78■■□□□ 1.56
SNRPA1-203ENST00000540017 PARD3Q8TEW0 1356 aa24.78■■□□□ 1.56
SNRPA1-203ENST00000540017 DDX10Q13206 875 aaKnown RBP24.77■■□□□ 1.56
SNRPA1-203ENST00000540017 COL3A1P02461 1466 aaPredicted RBP24.77■■□□□ 1.56
SNRPA1-203ENST00000540017 DOT1LQ8TEK3 1739 aa24.76■■□□□ 1.55
SNRPA1-203ENST00000540017 PROM2Q8N271 834 aa24.76■■□□□ 1.55
SNRPA1-203ENST00000540017 KAT6BQ8WYB5 2073 aa24.76■■□□□ 1.55
SNRPA1-203ENST00000540017 PRIM1P49642 420 aaKnown RBP24.75■■□□□ 1.55
SNRPA1-203ENST00000540017 SPG7Q9UQ90 795 aa24.75■■□□□ 1.55
SNRPA1-203ENST00000540017 NUP188Q5SRE5 1749 aa24.75■■□□□ 1.55
SNRPA1-203ENST00000540017 RGPD3A6NKT7 1758 aaPredicted RBP24.75■■□□□ 1.55
SNRPA1-203ENST00000540017 RGPD4Q7Z3J3 1758 aa24.75■■□□□ 1.55
SNRPA1-203ENST00000540017 BTAF1O14981 1849 aa24.75■■□□□ 1.55
SNRPA1-203ENST00000540017 PPP2R1AP30153 589 aa24.74■■□□□ 1.55
SNRPA1-203ENST00000540017 SULT6B1Q6IMI4 303 aa24.74■■□□□ 1.55
SNRPA1-203ENST00000540017 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.74■■□□□ 1.55
SNRPA1-203ENST00000540017 DIAPH1O60610 1272 aaKnown RBP24.73■■□□□ 1.55
SNRPA1-203ENST00000540017 KDRP35968 1356 aa24.72■■□□□ 1.55
SNRPA1-203ENST00000540017 SYTL4Q96C24 671 aaPredicted RBP24.72■■□□□ 1.55
SNRPA1-203ENST00000540017 PSDA5PKW4 1024 aaPredicted RBP24.7■■□□□ 1.54
SNRPA1-203ENST00000540017 NKX1-1Q15270 411 aaPredicted RBP24.7■■□□□ 1.54
SNRPA1-203ENST00000540017 TOGARAM1Q9Y4F4 1720 aa24.69■■□□□ 1.54
SNRPA1-203ENST00000540017 PLEKHG2Q9H7P9 1386 aa24.69■■□□□ 1.54
SNRPA1-203ENST00000540017 HMOX1P09601 288 aa24.69■■□□□ 1.54
SNRPA1-203ENST00000540017 PHKG2P15735 406 aa24.69■■□□□ 1.54
SNRPA1-203ENST00000540017 TXNRD1Q16881 649 aa24.69■■□□□ 1.54
SNRPA1-203ENST00000540017 R3HDM1Q15032 1099 aaKnown RBP24.67■■□□□ 1.54
SNRPA1-203ENST00000540017 IFNL2Q8IZJ0 200 aa24.67■■□□□ 1.54
SNRPA1-203ENST00000540017 PLEKHO1Q53GL0 409 aaPredicted RBP24.66■■□□□ 1.54
SNRPA1-203ENST00000540017 AMOTQ4VCS5 1084 aa24.64■■□□□ 1.54
SNRPA1-203ENST00000540017 ZNF530Q6P9A1 599 aaPredicted RBP24.64■■□□□ 1.54
SNRPA1-203ENST00000540017 ANO8Q9HCE9 1232 aaPredicted RBP24.64■■□□□ 1.54
SNRPA1-203ENST00000540017 U2SURPO15042 1029 aaKnown RBP24.63■■□□□ 1.53
SNRPA1-203ENST00000540017 CFAP53Q96M91 514 aa24.63■■□□□ 1.53
SNRPA1-203ENST00000540017 ITGB4P16144 1822 aa24.63■■□□□ 1.53
SNRPA1-203ENST00000540017 MPRIPQ6WCQ1 1025 aa24.62■■□□□ 1.53
SNRPA1-203ENST00000540017 LRRC4BQ9NT99 713 aa24.62■■□□□ 1.53
SNRPA1-203ENST00000540017 SRCAPQ6ZRS2 3230 aa24.61■■□□□ 1.53
SNRPA1-203ENST00000540017 NBPF14Q5TI25 921 aa24.61■■□□□ 1.53
SNRPA1-203ENST00000540017 KCNQ4P56696 695 aa24.6■■□□□ 1.53
SNRPA1-203ENST00000540017 PIGBQ92521 554 aa24.6■■□□□ 1.53
SNRPA1-203ENST00000540017 KDM6AO15550 1401 aaPredicted RBP24.59■■□□□ 1.53
SNRPA1-203ENST00000540017 LY75O60449 1722 aa24.58■■□□□ 1.52
SNRPA1-203ENST00000540017 DCAF5Q96JK2 942 aa24.57■■□□□ 1.52
SNRPA1-203ENST00000540017 PAPPAQ13219 1627 aa24.57■■□□□ 1.52
SNRPA1-203ENST00000540017 RALBP1Q15311 655 aa24.56■■□□□ 1.52
SNRPA1-203ENST00000540017 MTHFSDQ2M296 383 aaKnown RBP24.56■■□□□ 1.52
SNRPA1-203ENST00000540017 C1orf141Q5JVX7 400 aa24.55■■□□□ 1.52
SNRPA1-203ENST00000540017 ZNF316A6NFI3 1004 aaPredicted RBP24.54■■□□□ 1.52
SNRPA1-203ENST00000540017 HSP90AB1P08238 724 aaKnown RBP24.54■■□□□ 1.52
SNRPA1-203ENST00000540017 SLC27A3Q5K4L6 730 aa24.54■■□□□ 1.52
SNRPA1-203ENST00000540017 RSPH6AQ9H0K4 717 aa24.54■■□□□ 1.52
SNRPA1-203ENST00000540017 TMOD3Q9NYL9 352 aa24.54■■□□□ 1.52
SNRPA1-203ENST00000540017 NUDCQ9Y266 331 aa24.54■■□□□ 1.52
SNRPA1-203ENST00000540017 ERVV-2B6SEH9 535 aa24.53■■□□□ 1.52
SNRPA1-203ENST00000540017 PALLDQ8WX93 1383 aa24.53■■□□□ 1.52
SNRPA1-203ENST00000540017 U2AF1L5P0DN76 240 aaPredicted RBP24.52■■□□□ 1.52
SNRPA1-203ENST00000540017 U2AF1Q01081 240 aaKnown RBP eCLIP24.52■■□□□ 1.52
SNRPA1-203ENST00000540017 SLC15A2Q16348 729 aa24.52■■□□□ 1.52
SNRPA1-203ENST00000540017 ZNF827Q17R98 1081 aa24.52■■□□□ 1.52
SNRPA1-203ENST00000540017 AKAP4Q5JQC9 854 aa24.52■■□□□ 1.52
SNRPA1-203ENST00000540017 ASAP1Q9ULH1 1129 aa24.52■■□□□ 1.52
SNRPA1-203ENST00000540017 PRKAR2BP31323 418 aa24.51■■□□□ 1.51
SNRPA1-203ENST00000540017 PHACTR3Q96KR7 559 aa24.51■■□□□ 1.51
SNRPA1-203ENST00000540017 PDGFDQ9GZP0 370 aaPredicted RBP24.51■■□□□ 1.51
SNRPA1-203ENST00000540017 STK32BQ9NY57 414 aa24.51■■□□□ 1.51
SNRPA1-203ENST00000540017 CCNL1Q9UK58 526 aaPredicted RBP24.51■■□□□ 1.51
SNRPA1-203ENST00000540017 LGR6Q9HBX8 967 aa24.5■■□□□ 1.51
SNRPA1-203ENST00000540017 SMARCC1Q92922 1105 aaPredicted RBP24.49■■□□□ 1.51
SNRPA1-203ENST00000540017 AKT1S1Q96B36 256 aa24.49■■□□□ 1.51
SNRPA1-203ENST00000540017 ATG3Q9NT62 314 aa24.49■■□□□ 1.51
SNRPA1-203ENST00000540017 SCN11AQ9UI33 1791 aa24.49■■□□□ 1.51
SNRPA1-203ENST00000540017 CABP4P57796 275 aa24.48■■□□□ 1.51
SNRPA1-203ENST00000540017 MYBBP1AQ9BQG0 1328 aaKnown RBP24.47■■□□□ 1.51
SNRPA1-203ENST00000540017 PRKRIP1Q9H875 184 aaPredicted RBP24.47■■□□□ 1.51
SNRPA1-203ENST00000540017 RNMTO43148 476 aaKnown RBP24.46■■□□□ 1.51
SNRPA1-203ENST00000540017 FCHSD2O94868 740 aa24.46■■□□□ 1.51
SNRPA1-203ENST00000540017 NFATC2IPQ8NCF5 419 aa24.46■■□□□ 1.51
SNRPA1-203ENST00000540017 CASZ1Q86V15 1759 aa24.46■■□□□ 1.51
SNRPA1-203ENST00000540017 ADAMTS7Q9UKP4 1686 aa24.44■■□□□ 1.5
SNRPA1-203ENST00000540017 LRP5O75197 1615 aa24.43■■□□□ 1.5
SNRPA1-203ENST00000540017 VIRMAQ69YN4 1812 aaKnown RBP24.43■■□□□ 1.5
SNRPA1-203ENST00000540017 LOC102724428A0A0B4J2F2 783 aa24.43■■□□□ 1.5
SNRPA1-203ENST00000540017 SIK1P57059 783 aa24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms