RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 MBIPQ9NS73 344 aa12.39□□□□□ -0.43
TRAF1-202ENST00000540010 HAP1P54257 671 aaPredicted RBP12.38□□□□□ -0.43
TRAF1-202ENST00000540010 FOXD4L6Q3SYB3 417 aaPredicted RBP12.38□□□□□ -0.43
TRAF1-202ENST00000540010 FOXD4L3Q6VB84 417 aaPredicted RBP12.38□□□□□ -0.43
TRAF1-202ENST00000540010 DDX19BQ9UMR2 479 aa12.38□□□□□ -0.43
TRAF1-202ENST00000540010 ANKARQ7Z5J8 1434 aa12.38□□□□□ -0.43
TRAF1-202ENST00000540010 ADGRB2O60241 1585 aa12.38□□□□□ -0.43
TRAF1-202ENST00000540010 TRIM27P14373 513 aa12.38□□□□□ -0.43
TRAF1-202ENST00000540010 CFAP44Q96MT7 982 aa12.38□□□□□ -0.43
TRAF1-202ENST00000540010 SBNO1A3KN83 1393 aa12.38□□□□□ -0.43
TRAF1-202ENST00000540010 OVOS2A0A0J9YW53 1432 aa12.38□□□□□ -0.43
TRAF1-202ENST00000540010 OVOS2Q6IE36 1432 aa12.38□□□□□ -0.43
TRAF1-202ENST00000540010 MCCP23508 829 aa12.38□□□□□ -0.43
TRAF1-202ENST00000540010 AAMPQ13685 434 aa12.38□□□□□ -0.43
TRAF1-202ENST00000540010 ORAI2Q96SN7 254 aa12.37□□□□□ -0.43
TRAF1-202ENST00000540010 GAS2L2Q8NHY3 880 aa12.37□□□□□ -0.43
TRAF1-202ENST00000540010 BACH2Q9BYV9 841 aa12.37□□□□□ -0.43
TRAF1-202ENST00000540010 ALDH1L2Q3SY69 923 aa12.36□□□□□ -0.43
TRAF1-202ENST00000540010 DDX49Q9Y6V7 483 aaKnown RBP12.36□□□□□ -0.43
TRAF1-202ENST00000540010 IGHDP01880 384 aa12.36□□□□□ -0.43
TRAF1-202ENST00000540010 ZNF428Q96B54 188 aa12.36□□□□□ -0.43
TRAF1-202ENST00000540010 EYA1Q99502 592 aa12.36□□□□□ -0.43
TRAF1-202ENST00000540010 TRIM6-TRIM34B2RNG4 842 aa12.36□□□□□ -0.43
TRAF1-202ENST00000540010 HSPA2P54652 639 aa12.36□□□□□ -0.43
TRAF1-202ENST00000540010 SETD1BQ9UPS6 1966 aaKnown RBP12.36□□□□□ -0.43
TRAF1-202ENST00000540010 HOXC9P31274 260 aa12.36□□□□□ -0.43
TRAF1-202ENST00000540010 TSPYL6Q8N831 410 aa12.36□□□□□ -0.43
TRAF1-202ENST00000540010 MON2Q7Z3U7 1717 aa12.35□□□□□ -0.43
TRAF1-202ENST00000540010 KDM2BQ8NHM5 1336 aa12.35□□□□□ -0.43
TRAF1-202ENST00000540010 DRC7Q8IY82 874 aa12.35□□□□□ -0.43
TRAF1-202ENST00000540010 TMEM57Q8N5G2 664 aa12.35□□□□□ -0.43
TRAF1-202ENST00000540010 USHBP1Q8N6Y0 703 aa12.35□□□□□ -0.43
TRAF1-202ENST00000540010 TSPYL4Q9UJ04 414 aa12.35□□□□□ -0.43
TRAF1-202ENST00000540010 USP31Q70CQ4 1352 aa12.35□□□□□ -0.43
TRAF1-202ENST00000540010 KCNH5Q8NCM2 988 aa12.35□□□□□ -0.43
TRAF1-202ENST00000540010 HSP90AA2PQ14568 343 aaPredicted RBP12.34□□□□□ -0.43
TRAF1-202ENST00000540010 MIS18AQ9NYP9 233 aa12.34□□□□□ -0.43
TRAF1-202ENST00000540010 MTHFSDQ2M296 383 aaKnown RBP12.34□□□□□ -0.43
TRAF1-202ENST00000540010 C8orf58Q8NAV2 365 aa12.34□□□□□ -0.43
TRAF1-202ENST00000540010 VAMP4O75379 141 aa12.33□□□□□ -0.43
TRAF1-202ENST00000540010 LNPKQ9C0E8 428 aa12.33□□□□□ -0.43
TRAF1-202ENST00000540010 C19orf44Q9H6X5 657 aa12.33□□□□□ -0.43
TRAF1-202ENST00000540010 PCDHB15Q9Y5E8 787 aa12.33□□□□□ -0.43
TRAF1-202ENST00000540010 AKAP12Q02952 1782 aa12.33□□□□□ -0.44
TRAF1-202ENST00000540010 KRT28Q7Z3Y7 464 aa12.33□□□□□ -0.44
TRAF1-202ENST00000540010 ADGRL3Q9HAR2 1447 aa12.33□□□□□ -0.44
TRAF1-202ENST00000540010 CHAF1AQ13111 956 aaPredicted RBP12.33□□□□□ -0.44
TRAF1-202ENST00000540010 KIAA1211Q6ZU35 1233 aa12.33□□□□□ -0.44
TRAF1-202ENST00000540010 KIAA2012Q0VF49 1180 aa12.32□□□□□ -0.44
TRAF1-202ENST00000540010 ARHGEF10O15013 1369 aa12.32□□□□□ -0.44
TRAF1-202ENST00000540010 VSIG10Q8N0Z9 540 aa12.32□□□□□ -0.44
TRAF1-202ENST00000540010 API5Q9BZZ5 524 aaKnown RBP12.32□□□□□ -0.44
TRAF1-202ENST00000540010 DDX11L8A8MPP1 907 aa12.31□□□□□ -0.44
TRAF1-202ENST00000540010 SSH2Q76I76 1423 aa12.31□□□□□ -0.44
TRAF1-202ENST00000540010 GNAT3A8MTJ3 354 aa12.3□□□□□ -0.44
TRAF1-202ENST00000540010 KRT24Q2M2I5 525 aa12.3□□□□□ -0.44
TRAF1-202ENST00000540010 STK31Q9BXU1 1019 aa12.3□□□□□ -0.44
TRAF1-202ENST00000540010 XRN1Q8IZH2 1706 aaKnown RBP12.3□□□□□ -0.44
TRAF1-202ENST00000540010 ADAMTSL3P82987 1691 aa12.3□□□□□ -0.44
TRAF1-202ENST00000540010 MRPL50Q8N5N7 158 aaKnown RBP12.3□□□□□ -0.44
TRAF1-202ENST00000540010 ZC3H6P61129 1189 aaKnown RBP12.3□□□□□ -0.44
TRAF1-202ENST00000540010 CHMP5Q9NZZ3 219 aa12.3□□□□□ -0.44
TRAF1-202ENST00000540010 PDZRN3Q9UPQ7 1066 aa12.3□□□□□ -0.44
TRAF1-202ENST00000540010 ZNF853P0CG23 659 aa12.29□□□□□ -0.44
TRAF1-202ENST00000540010 CSB-PGBD3P0DP91 1061 aa12.29□□□□□ -0.44
TRAF1-202ENST00000540010 IP6K1Q92551 441 aa12.29□□□□□ -0.44
TRAF1-202ENST00000540010 NECTIN2Q92692 538 aa12.29□□□□□ -0.44
TRAF1-202ENST00000540010 C22orf23Q9BZE7 217 aa12.29□□□□□ -0.44
TRAF1-202ENST00000540010 GCP02774 474 aa12.29□□□□□ -0.44
TRAF1-202ENST00000540010 IGSF1Q8N6C5 1336 aa12.29□□□□□ -0.44
TRAF1-202ENST00000540010 PTMSP20962 102 aa12.29□□□□□ -0.44
TRAF1-202ENST00000540010 TOPAZ1Q8N9V7 1692 aa12.29□□□□□ -0.44
TRAF1-202ENST00000540010 ST18O60284 1047 aa12.28□□□□□ -0.44
TRAF1-202ENST00000540010 C1orf115Q9H7X2 142 aa12.28□□□□□ -0.44
TRAF1-202ENST00000540010 RGPD8O14715 1765 aaPredicted RBP12.28□□□□□ -0.44
TRAF1-202ENST00000540010 CHL1O00533 1208 aa12.28□□□□□ -0.44
TRAF1-202ENST00000540010 SLC4A2P04920 1241 aa12.27□□□□□ -0.44
TRAF1-202ENST00000540010 C1orf141Q5JVX7 400 aa12.27□□□□□ -0.44
TRAF1-202ENST00000540010 LRRC59Q96AG4 307 aaKnown RBP12.27□□□□□ -0.44
TRAF1-202ENST00000540010 TEFQ10587 303 aa12.27□□□□□ -0.45
TRAF1-202ENST00000540010 CADPS2Q86UW7 1296 aa12.27□□□□□ -0.45
TRAF1-202ENST00000540010 RILPL2Q969X0 211 aa12.27□□□□□ -0.45
TRAF1-202ENST00000540010 TMEM94Q12767 1356 aa12.27□□□□□ -0.45
TRAF1-202ENST00000540010 HMMRO75330 724 aa12.26□□□□□ -0.45
TRAF1-202ENST00000540010 ZNF530Q6P9A1 599 aaPredicted RBP12.26□□□□□ -0.45
TRAF1-202ENST00000540010 ARHGAP45Q92619 1136 aa12.26□□□□□ -0.45
TRAF1-202ENST00000540010 DDX17Q92841 729 aaKnown RBP12.26□□□□□ -0.45
TRAF1-202ENST00000540010 PLEKHO1Q53GL0 409 aaPredicted RBP12.26□□□□□ -0.45
TRAF1-202ENST00000540010 NLRP2Q9NX02 1062 aa12.26□□□□□ -0.45
TRAF1-202ENST00000540010 SYAP1Q96A49 352 aaPredicted RBP12.25□□□□□ -0.45
TRAF1-202ENST00000540010 KIF24Q5T7B8 1368 aa12.25□□□□□ -0.45
TRAF1-202ENST00000540010 NRKQ7Z2Y5 1582 aa12.25□□□□□ -0.45
TRAF1-202ENST00000540010 NBPF6Q5VWK0 638 aa12.25□□□□□ -0.45
TRAF1-202ENST00000540010 ANKRD24Q8TF21 1146 aa12.25□□□□□ -0.45
TRAF1-202ENST00000540010 NBPF4Q96M43 638 aa12.25□□□□□ -0.45
TRAF1-202ENST00000540010 FMN2Q9NZ56 1722 aa12.25□□□□□ -0.45
TRAF1-202ENST00000540010 ZNF142P52746 1687 aaPredicted RBP12.24□□□□□ -0.45
TRAF1-202ENST00000540010 ZBTB40Q9NUA8 1239 aa12.24□□□□□ -0.45
TRAF1-202ENST00000540010 MSH6P52701 1360 aa12.24□□□□□ -0.45
TRAF1-202ENST00000540010 TAF7Q15545 349 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms