RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 HSP90AB2PQ58FF8 381 aa8.37□□□□□ -1.07
USP28-206ENST00000538224 RTL5Q5HYW3 569 aaPredicted RBP8.37□□□□□ -1.07
USP28-206ENST00000538224 GCC1Q96CN9 775 aa8.37□□□□□ -1.07
USP28-206ENST00000538224 BABAM1Q9NWV8 329 aa8.37□□□□□ -1.07
USP28-206ENST00000538224 PHF8Q9UPP1 1060 aa8.37□□□□□ -1.07
USP28-206ENST00000538224 KDM3BQ7LBC6 1761 aa8.37□□□□□ -1.07
USP28-206ENST00000538224 CHL1O00533 1208 aa8.36□□□□□ -1.07
USP28-206ENST00000538224 PAK3O75914 559 aaPredicted RBP8.36□□□□□ -1.07
USP28-206ENST00000538224 NLRP6P59044 892 aa8.36□□□□□ -1.07
USP28-206ENST00000538224 BECN1Q14457 450 aa8.36□□□□□ -1.07
USP28-206ENST00000538224 SKAP1Q86WV1 359 aa8.36□□□□□ -1.07
USP28-206ENST00000538224 AEBP1Q8IUX7 1158 aa8.36□□□□□ -1.07
USP28-206ENST00000538224 KCNH5Q8NCM2 988 aa8.36□□□□□ -1.07
USP28-206ENST00000538224 THUMPD2Q9BTF0 503 aaKnown RBP8.36□□□□□ -1.07
USP28-206ENST00000538224 CHMP4AQ9BY43 222 aa8.36□□□□□ -1.07
USP28-206ENST00000538224 USP35Q9P2H5 1018 aa8.36□□□□□ -1.07
USP28-206ENST00000538224 LMTK3Q96Q04 1460 aa8.36□□□□□ -1.07
USP28-206ENST00000538224 MED1Q15648 1581 aaPredicted RBP8.35□□□□□ -1.07
USP28-206ENST00000538224 ABCC6O95255 1503 aa8.35□□□□□ -1.07
USP28-206ENST00000538224 ALS2Q96Q42 1657 aa8.35□□□□□ -1.07
USP28-206ENST00000538224 PXDNLA1KZ92 1463 aa8.35□□□□□ -1.07
USP28-206ENST00000538224 HOXC9P31274 260 aa8.35□□□□□ -1.07
USP28-206ENST00000538224 OVOS2A0A0G2JMS6 1433 aa8.35□□□□□ -1.07
USP28-206ENST00000538224 DCCP43146 1447 aa8.35□□□□□ -1.07
USP28-206ENST00000538224 NCAPD2Q15021 1401 aa8.35□□□□□ -1.07
USP28-206ENST00000538224 MAP3K5Q99683 1374 aa8.35□□□□□ -1.07
USP28-206ENST00000538224 TSPYL6Q8N831 410 aa8.34□□□□□ -1.07
USP28-206ENST00000538224 ABTB2Q8N961 1025 aa8.34□□□□□ -1.07
USP28-206ENST00000538224 C8orf58Q8NAV2 365 aa8.34□□□□□ -1.07
USP28-206ENST00000538224 MST1RQ04912 1400 aa8.34□□□□□ -1.07
USP28-206ENST00000538224 NCOA3Q9Y6Q9 1424 aa8.34□□□□□ -1.07
USP28-206ENST00000538224 RGPD2P0DJD1 1756 aa8.33□□□□□ -1.08
USP28-206ENST00000538224 FAM83GA6ND36 823 aa8.33□□□□□ -1.08
USP28-206ENST00000538224 GNAT3A8MTJ3 354 aa8.33□□□□□ -1.08
USP28-206ENST00000538224 ZBTB7BO15156 539 aaPredicted RBP8.33□□□□□ -1.08
USP28-206ENST00000538224 NUCB1Q02818 461 aa8.33□□□□□ -1.08
USP28-206ENST00000538224 INTS3Q68E01 1043 aaKnown RBP8.33□□□□□ -1.08
USP28-206ENST00000538224 EYA1Q99502 592 aa8.33□□□□□ -1.08
USP28-206ENST00000538224 TSPYL4Q9UJ04 414 aa8.33□□□□□ -1.08
USP28-206ENST00000538224 PLEKHG2Q9H7P9 1386 aa8.33□□□□□ -1.08
USP28-206ENST00000538224 RGS12O14924 1447 aa8.32□□□□□ -1.08
USP28-206ENST00000538224 SOX12O15370 315 aa8.32□□□□□ -1.08
USP28-206ENST00000538224 DCTN1Q14203 1278 aa8.32□□□□□ -1.08
USP28-206ENST00000538224 CHD1LQ86WJ1 897 aa8.32□□□□□ -1.08
USP28-206ENST00000538224 IP6K1Q92551 441 aa8.32□□□□□ -1.08
USP28-206ENST00000538224 SIPA1L3O60292 1781 aaPredicted RBP8.32□□□□□ -1.08
USP28-206ENST00000538224 ADAMTS7Q9UKP4 1686 aa8.31□□□□□ -1.08
USP28-206ENST00000538224 PSME1Q06323 249 aa8.31□□□□□ -1.08
USP28-206ENST00000538224 MTHFSDQ2M296 383 aaKnown RBP8.31□□□□□ -1.08
USP28-206ENST00000538224 MCM10Q7L590 875 aa8.31□□□□□ -1.08
USP28-206ENST00000538224 C14orf37Q86TY3 774 aa8.31□□□□□ -1.08
USP28-206ENST00000538224 RPAP2Q8IXW5 612 aaPredicted RBP8.31□□□□□ -1.08
USP28-206ENST00000538224 TBC1D32Q96NH3 1257 aa8.31□□□□□ -1.08
USP28-206ENST00000538224 STK31Q9BXU1 1019 aa8.31□□□□□ -1.08
USP28-206ENST00000538224 CRYBG1Q9Y4K1 1723 aa8.31□□□□□ -1.08
USP28-206ENST00000538224 ATP10DQ9P241 1426 aa8.3□□□□□ -1.08
USP28-206ENST00000538224 ELL2O00472 640 aaPredicted RBP8.3□□□□□ -1.08
USP28-206ENST00000538224 HMMRO75330 724 aa8.3□□□□□ -1.08
USP28-206ENST00000538224 CCT4P50991 539 aaKnown RBP8.3□□□□□ -1.08
USP28-206ENST00000538224 ESCO1Q5FWF5 840 aa8.3□□□□□ -1.08
USP28-206ENST00000538224 BMP2KLQ5H9B9 411 aa8.3□□□□□ -1.08
USP28-206ENST00000538224 CCDC30Q5VVM6 783 aa8.3□□□□□ -1.08
USP28-206ENST00000538224 MSH6P52701 1360 aa8.3□□□□□ -1.08
USP28-206ENST00000538224 USP19O94966 1318 aa8.29□□□□□ -1.08
USP28-206ENST00000538224 HOXB7P09629 217 aa8.29□□□□□ -1.08
USP28-206ENST00000538224 CEMIPQ8WUJ3 1361 aa8.29□□□□□ -1.08
USP28-206ENST00000538224 C1orf167Q5SNV9 1468 aa8.29□□□□□ -1.08
USP28-206ENST00000538224 RGPD5Q99666 1765 aa8.29□□□□□ -1.08
USP28-206ENST00000538224 STRCP1A6NGW2 1772 aa8.28□□□□□ -1.08
USP28-206ENST00000538224 SCN11AQ9UI33 1791 aa8.28□□□□□ -1.08
USP28-206ENST00000538224 NBR1Q14596 966 aa8.28□□□□□ -1.08
USP28-206ENST00000538224 AMOTQ4VCS5 1084 aa8.28□□□□□ -1.08
USP28-206ENST00000538224 ANKRD44Q8N8A2 993 aa8.28□□□□□ -1.08
USP28-206ENST00000538224 TUBGCP6Q96RT7 1819 aa8.28□□□□□ -1.08
USP28-206ENST00000538224 PARP4Q9UKK3 1724 aaKnown RBP8.28□□□□□ -1.08
USP28-206ENST00000538224 PKD1L3Q7Z443 1732 aa8.27□□□□□ -1.09
USP28-206ENST00000538224 TAF7Q15545 349 aaPredicted RBP8.27□□□□□ -1.09
USP28-206ENST00000538224 ANKRD45Q5TZF3 282 aa8.27□□□□□ -1.09
USP28-206ENST00000538224 PROSER2Q86WR7 435 aaPredicted RBP8.27□□□□□ -1.09
USP28-206ENST00000538224 LNPKQ9C0E8 428 aa8.27□□□□□ -1.09
USP28-206ENST00000538224 DCTPP1Q9H773 170 aa8.27□□□□□ -1.09
USP28-206ENST00000538224 FOXO3O43524 673 aa8.26□□□□□ -1.09
USP28-206ENST00000538224 SLC4A2P04920 1241 aa8.26□□□□□ -1.09
USP28-206ENST00000538224 GNAI3P08754 354 aa8.26□□□□□ -1.09
USP28-206ENST00000538224 PLEKHO1Q53GL0 409 aaPredicted RBP8.26□□□□□ -1.09
USP28-206ENST00000538224 AKAP4Q5JQC9 854 aa8.26□□□□□ -1.09
USP28-206ENST00000538224 NUTM2GQ5VZR2 741 aa8.26□□□□□ -1.09
USP28-206ENST00000538224 C22orf23Q9BZE7 217 aa8.26□□□□□ -1.09
USP28-206ENST00000538224 C19orf44Q9H6X5 657 aa8.26□□□□□ -1.09
USP28-206ENST00000538224 COL18A1P39060 1754 aa8.25□□□□□ -1.09
USP28-206ENST00000538224 AK9Q5TCS8 1911 aa8.25□□□□□ -1.09
USP28-206ENST00000538224 XIRP1Q702N8 1843 aaKnown RBP8.25□□□□□ -1.09
USP28-206ENST00000538224 SEC24BO95487 1268 aa8.25□□□□□ -1.09
USP28-206ENST00000538224 CEP85Q6P2H3 762 aa8.25□□□□□ -1.09
USP28-206ENST00000538224 CASC1Q6TDU7 716 aa8.25□□□□□ -1.09
USP28-206ENST00000538224 ARHGEF25Q86VW2 580 aa8.25□□□□□ -1.09
USP28-206ENST00000538224 LTV1Q96GA3 475 aaPredicted RBP8.25□□□□□ -1.09
USP28-206ENST00000538224 C1orf115Q9H7X2 142 aa8.25□□□□□ -1.09
USP28-206ENST00000538224 LAMB4A4D0S4 1761 aa8.25□□□□□ -1.09
USP28-206ENST00000538224 TNS3Q68CZ2 1445 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms