RNA–Protein interactions for RNA: ENST00000535290.5

CLIP1-206, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-206ENST00000535290 DDX54Q8TDD1 881 aaKnown RBP12.13□□□□□ -0.47
CLIP1-206ENST00000535290 SYTL4Q96C24 671 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-206ENST00000535290 PIK3C2AO00443 1686 aa12.13□□□□□ -0.47
CLIP1-206ENST00000535290 QSER1Q2KHR3 1735 aa12.12□□□□□ -0.47
CLIP1-206ENST00000535290 JMYQ8N9B5 988 aa12.12□□□□□ -0.47
CLIP1-206ENST00000535290 KLRG1Q96E93 195 aa12.12□□□□□ -0.47
CLIP1-206ENST00000535290 CCNL1Q9UK58 526 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-206ENST00000535290 RGPD5Q99666 1765 aa12.12□□□□□ -0.47
CLIP1-206ENST00000535290 IGSF1Q8N6C5 1336 aa12.11□□□□□ -0.47
CLIP1-206ENST00000535290 CENPJQ9HC77 1338 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-206ENST00000535290 TUBGCP6Q96RT7 1819 aa12.1□□□□□ -0.47
CLIP1-206ENST00000535290 NFAT5O94916 1531 aa12.1□□□□□ -0.47
CLIP1-206ENST00000535290 NSD2O96028 1365 aa12.09□□□□□ -0.47
CLIP1-206ENST00000535290 NMRK2Q9NPI5 230 aa12.09□□□□□ -0.47
CLIP1-206ENST00000535290 ANKRD24Q8TF21 1146 aa12.08□□□□□ -0.48
CLIP1-206ENST00000535290 ANKRD36BQ8N2N9 1353 aa12.07□□□□□ -0.48
CLIP1-206ENST00000535290 SLC34A2O95436 690 aa12.07□□□□□ -0.48
CLIP1-206ENST00000535290 ZNF692Q9BU19 519 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-206ENST00000535290 TTC21AQ8NDW8 1320 aa12.07□□□□□ -0.48
CLIP1-206ENST00000535290 AMIGO3Q86WK7 504 aa12.05□□□□□ -0.48
CLIP1-206ENST00000535290 RBM46Q8TBY0 533 aaKnown RBP12.05□□□□□ -0.48
CLIP1-206ENST00000535290 SMIM5Q71RC9 77 aa12.04□□□□□ -0.48
CLIP1-206ENST00000535290 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.03□□□□□ -0.48
CLIP1-206ENST00000535290 FLAD1Q8NFF5 587 aa12.03□□□□□ -0.48
CLIP1-206ENST00000535290 USP47Q96K76 1375 aa12.03□□□□□ -0.48
CLIP1-206ENST00000535290 NME9Q86XW9 330 aa12.02□□□□□ -0.49
CLIP1-206ENST00000535290 LTV1Q96GA3 475 aaPredicted RBP12.02□□□□□ -0.49
CLIP1-206ENST00000535290 QRICH2Q9H0J4 1663 aa12.02□□□□□ -0.49
CLIP1-206ENST00000535290 EVC2Q86UK5 1308 aa12.02□□□□□ -0.49
CLIP1-206ENST00000535290 LY75O60449 1722 aa12.02□□□□□ -0.49
CLIP1-206ENST00000535290 USP31Q70CQ4 1352 aa12.02□□□□□ -0.49
CLIP1-206ENST00000535290 KTN1Q86UP2 1357 aaKnown RBP12.02□□□□□ -0.49
CLIP1-206ENST00000535290 WDR90Q96KV7 1748 aa12.01□□□□□ -0.49
CLIP1-206ENST00000535290 FSTL1Q12841 308 aa12.01□□□□□ -0.49
CLIP1-206ENST00000535290 RAB3GAP2Q9H2M9 1393 aa12.01□□□□□ -0.49
CLIP1-206ENST00000535290 HSPA1AP0DMV8 641 aaKnown RBP12□□□□□ -0.49
CLIP1-206ENST00000535290 HSPA1BP0DMV9 641 aaKnown RBP12□□□□□ -0.49
CLIP1-206ENST00000535290 C16orf71Q8IYS4 520 aaPredicted RBP12□□□□□ -0.49
CLIP1-206ENST00000535290 ZCRB1Q8TBF4 217 aaKnown RBP12□□□□□ -0.49
CLIP1-206ENST00000535290 PHF14O94880 888 aa11.99□□□□□ -0.49
CLIP1-206ENST00000535290 ARHGAP27Q6ZUM4 889 aa11.99□□□□□ -0.49
CLIP1-206ENST00000535290 BCS1LQ9Y276 419 aa11.99□□□□□ -0.49
CLIP1-206ENST00000535290 CICQ96RK0 1608 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-206ENST00000535290 PCNTO95613 3336 aa11.99□□□□□ -0.49
CLIP1-206ENST00000535290 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.98□□□□□ -0.49
CLIP1-206ENST00000535290 IP6K1Q92551 441 aa11.98□□□□□ -0.49
CLIP1-206ENST00000535290 A0A0G2JLW4 131 aa11.97□□□□□ -0.49
CLIP1-206ENST00000535290 C9orf131Q5VYM1 1079 aa11.97□□□□□ -0.49
CLIP1-206ENST00000535290 AK7Q96M32 723 aa11.97□□□□□ -0.49
CLIP1-206ENST00000535290 DOT1LQ8TEK3 1739 aa11.97□□□□□ -0.49
CLIP1-206ENST00000535290 PXDNLA1KZ92 1463 aa11.96□□□□□ -0.49
CLIP1-206ENST00000535290 PALLDQ8WX93 1383 aa11.96□□□□□ -0.49
CLIP1-206ENST00000535290 SBNO2Q9Y2G9 1366 aa11.96□□□□□ -0.49
CLIP1-206ENST00000535290 KIAA1210Q9ULL0 1709 aa11.96□□□□□ -0.49
CLIP1-206ENST00000535290 MEGF6O75095 1541 aa11.96□□□□□ -0.5
CLIP1-206ENST00000535290 RRAGCQ9HB90 399 aa11.95□□□□□ -0.5
CLIP1-206ENST00000535290 MMP10P09238 476 aa11.94□□□□□ -0.5
CLIP1-206ENST00000535290 TGFB2P61812 414 aa11.94□□□□□ -0.5
CLIP1-206ENST00000535290 MPRIPQ6WCQ1 1025 aa11.94□□□□□ -0.5
CLIP1-206ENST00000535290 KCPQ6ZWJ8 1503 aa11.93□□□□□ -0.5
CLIP1-206ENST00000535290 FCHSD2O94868 740 aa11.93□□□□□ -0.5
CLIP1-206ENST00000535290 DPEP1P16444 411 aa11.93□□□□□ -0.5
CLIP1-206ENST00000535290 HMGB2P26583 209 aaKnown RBP11.93□□□□□ -0.5
CLIP1-206ENST00000535290 SSFA2P28290 1259 aa11.93□□□□□ -0.5
CLIP1-206ENST00000535290 SMC1BQ8NDV3 1235 aa11.93□□□□□ -0.5
CLIP1-206ENST00000535290 C5P01031 1676 aa11.93□□□□□ -0.5
CLIP1-206ENST00000535290 KDM2BQ8NHM5 1336 aa11.92□□□□□ -0.5
CLIP1-206ENST00000535290 USP54Q70EL1 1684 aa11.92□□□□□ -0.5
CLIP1-206ENST00000535290 FBLN1P23142 703 aa11.92□□□□□ -0.5
CLIP1-206ENST00000535290 LINC00116Q8NCU8 138 aa11.92□□□□□ -0.5
CLIP1-206ENST00000535290 LTN1O94822 1766 aa11.92□□□□□ -0.5
CLIP1-206ENST00000535290 TOGARAM1Q9Y4F4 1720 aa11.91□□□□□ -0.5
CLIP1-206ENST00000535290 CD163L1Q9NR16 1453 aa11.91□□□□□ -0.5
CLIP1-206ENST00000535290 HOXC9P31274 260 aa11.91□□□□□ -0.5
CLIP1-206ENST00000535290 C1QBPQ07021 282 aaKnown RBP11.91□□□□□ -0.5
CLIP1-206ENST00000535290 NBPF6Q5VWK0 638 aa11.91□□□□□ -0.5
CLIP1-206ENST00000535290 USHBP1Q8N6Y0 703 aa11.91□□□□□ -0.5
CLIP1-206ENST00000535290 NBPF4Q96M43 638 aa11.91□□□□□ -0.5
CLIP1-206ENST00000535290 C4BP0C0L5 1744 aa11.91□□□□□ -0.5
CLIP1-206ENST00000535290 PLEKHG2Q9H7P9 1386 aa11.91□□□□□ -0.5
CLIP1-206ENST00000535290 MAP3K19Q56UN5 1328 aa11.9□□□□□ -0.5
CLIP1-206ENST00000535290 GNPATO15228 680 aa11.9□□□□□ -0.5
CLIP1-206ENST00000535290 SMARCC1Q92922 1105 aaPredicted RBP11.9□□□□□ -0.5
CLIP1-206ENST00000535290 RNF181Q9P0P0 153 aa11.9□□□□□ -0.5
CLIP1-206ENST00000535290 C10orf71Q711Q0 1435 aa11.89□□□□□ -0.51
CLIP1-206ENST00000535290 KCNA3P22001 575 aa11.89□□□□□ -0.51
CLIP1-206ENST00000535290 TMC1Q8TDI8 760 aa11.89□□□□□ -0.51
CLIP1-206ENST00000535290 PIGBQ92521 554 aa11.89□□□□□ -0.51
CLIP1-206ENST00000535290 SLC12A5Q9H2X9 1139 aa11.89□□□□□ -0.51
CLIP1-206ENST00000535290 FAM208AQ9UK61 1670 aaKnown RBP11.89□□□□□ -0.51
CLIP1-206ENST00000535290 NSD3Q9BZ95 1437 aa11.88□□□□□ -0.51
CLIP1-206ENST00000535290 LOC102724428A0A0B4J2F2 783 aa11.88□□□□□ -0.51
CLIP1-206ENST00000535290 CYP27B1O15528 508 aa11.88□□□□□ -0.51
CLIP1-206ENST00000535290 AMPHP49418 695 aa11.88□□□□□ -0.51
CLIP1-206ENST00000535290 SIK1P57059 783 aa11.88□□□□□ -0.51
CLIP1-206ENST00000535290 ITPK1Q13572 414 aa11.88□□□□□ -0.51
CLIP1-206ENST00000535290 RAPGEF4Q8WZA2 1011 aa11.88□□□□□ -0.51
CLIP1-206ENST00000535290 PCDH10Q9P2E7 1040 aa11.88□□□□□ -0.51
CLIP1-206ENST00000535290 MON2Q7Z3U7 1717 aa11.88□□□□□ -0.51
CLIP1-206ENST00000535290 TAF1LQ8IZX4 1826 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms