RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CEBPAP49715 358 aaPredicted RBP26.46■■□□□ 1.83
VPS28-205ENST00000526204 ANKRD44Q8N8A2 993 aa26.46■■□□□ 1.83
VPS28-205ENST00000526204 SPRYD3Q8NCJ5 442 aa26.46■■□□□ 1.83
VPS28-205ENST00000526204 TBC1D9Q6ZT07 1266 aa26.45■■□□□ 1.83
VPS28-205ENST00000526204 KRT24Q2M2I5 525 aa26.45■■□□□ 1.82
VPS28-205ENST00000526204 NGDNQ8NEJ9 315 aaKnown RBP26.45■■□□□ 1.82
VPS28-205ENST00000526204 RTF1Q92541 710 aaKnown RBP26.45■■□□□ 1.82
VPS28-205ENST00000526204 KDRP35968 1356 aa26.44■■□□□ 1.82
VPS28-205ENST00000526204 CDC45O75419 566 aa26.44■■□□□ 1.82
VPS28-205ENST00000526204 NCOA3Q9Y6Q9 1424 aa26.43■■□□□ 1.82
VPS28-205ENST00000526204 MCM4P33991 863 aa26.43■■□□□ 1.82
VPS28-205ENST00000526204 THEMISQ8N1K5 641 aaPredicted RBP26.43■■□□□ 1.82
VPS28-205ENST00000526204 SOX12O15370 315 aa26.42■■□□□ 1.82
VPS28-205ENST00000526204 DIP2AQ14689 1571 aa26.42■■□□□ 1.82
VPS28-205ENST00000526204 PLEKHM2Q8IWE5 1019 aa26.41■■□□□ 1.82
VPS28-205ENST00000526204 ATP10DQ9P241 1426 aa26.41■■□□□ 1.82
VPS28-205ENST00000526204 MTHFSDQ2M296 383 aaKnown RBP26.41■■□□□ 1.82
VPS28-205ENST00000526204 GAS2L2Q8NHY3 880 aa26.41■■□□□ 1.82
VPS28-205ENST00000526204 AMPHP49418 695 aa26.4■■□□□ 1.82
VPS28-205ENST00000526204 BRPF3Q9ULD4 1205 aa26.4■■□□□ 1.82
VPS28-205ENST00000526204 IGSF1Q8N6C5 1336 aa26.4■■□□□ 1.82
VPS28-205ENST00000526204 SLC4A2P04920 1241 aa26.39■■□□□ 1.82
VPS28-205ENST00000526204 CEP85Q6P2H3 762 aa26.39■■□□□ 1.82
VPS28-205ENST00000526204 HTATSF1O43719 755 aaKnown RBP26.39■■□□□ 1.81
VPS28-205ENST00000526204 KIF2CQ99661 725 aa26.39■■□□□ 1.81
VPS28-205ENST00000526204 TSPYL4Q9UJ04 414 aa26.39■■□□□ 1.81
VPS28-205ENST00000526204 RTL1A6NKG5 1358 aa26.38■■□□□ 1.81
VPS28-205ENST00000526204 DDIT3P35638 169 aa26.38■■□□□ 1.81
VPS28-205ENST00000526204 CIZ1Q9ULV3 898 aaPredicted RBP26.38■■□□□ 1.81
VPS28-205ENST00000526204 ANKARQ7Z5J8 1434 aa26.38■■□□□ 1.81
VPS28-205ENST00000526204 MSH6P52701 1360 aa26.37■■□□□ 1.81
VPS28-205ENST00000526204 EYA1Q99502 592 aa26.36■■□□□ 1.81
VPS28-205ENST00000526204 HSP90AB1P08238 724 aaKnown RBP26.36■■□□□ 1.81
VPS28-205ENST00000526204 GSPT1P15170 499 aaKnown RBP26.36■■□□□ 1.81
VPS28-205ENST00000526204 TTC22Q5TAA0 569 aa26.36■■□□□ 1.81
VPS28-205ENST00000526204 FMN2Q9NZ56 1722 aa26.36■■□□□ 1.81
VPS28-205ENST00000526204 L1TD1Q5T7N2 865 aaKnown RBP26.35■■□□□ 1.81
VPS28-205ENST00000526204 FOXO3O43524 673 aa26.35■■□□□ 1.81
VPS28-205ENST00000526204 CCT4P50991 539 aaKnown RBP26.35■■□□□ 1.81
VPS28-205ENST00000526204 HMMRO75330 724 aa26.33■■□□□ 1.81
VPS28-205ENST00000526204 MEIS3Q99687 375 aa26.33■■□□□ 1.81
VPS28-205ENST00000526204 DDX11L8A8MPP1 907 aa26.33■■□□□ 1.81
VPS28-205ENST00000526204 MIS18AQ9NYP9 233 aa26.33■■□□□ 1.81
VPS28-205ENST00000526204 NLRP6P59044 892 aa26.32■■□□□ 1.8
VPS28-205ENST00000526204 RIMS1Q86UR5 1692 aaKnown RBP26.32■■□□□ 1.8
VPS28-205ENST00000526204 PIK3C2AO00443 1686 aa26.3■■□□□ 1.8
VPS28-205ENST00000526204 XRN1Q8IZH2 1706 aaKnown RBP26.3■■□□□ 1.8
VPS28-205ENST00000526204 K7ELQ4 463 aaPredicted RBP26.3■■□□□ 1.8
VPS28-205ENST00000526204 STK31Q9BXU1 1019 aa26.3■■□□□ 1.8
VPS28-205ENST00000526204 CEP170BQ9Y4F5 1589 aaPredicted RBP26.3■■□□□ 1.8
VPS28-205ENST00000526204 SOS1Q07889 1333 aaPredicted RBP26.29■■□□□ 1.8
VPS28-205ENST00000526204 CASC1Q6TDU7 716 aa26.29■■□□□ 1.8
VPS28-205ENST00000526204 C16orf71Q8IYS4 520 aaPredicted RBP26.28■■□□□ 1.8
VPS28-205ENST00000526204 GNAT3A8MTJ3 354 aa26.27■■□□□ 1.8
VPS28-205ENST00000526204 HSP90AA1P07900 732 aaKnown RBP26.27■■□□□ 1.8
VPS28-205ENST00000526204 HOXC9P31274 260 aa26.27■■□□□ 1.8
VPS28-205ENST00000526204 TRAK2O60296 914 aa26.27■■□□□ 1.8
VPS28-205ENST00000526204 BABAM1Q9NWV8 329 aa26.27■■□□□ 1.8
VPS28-205ENST00000526204 CCDC30Q5VVM6 783 aa26.26■■□□□ 1.79
VPS28-205ENST00000526204 G2E3Q7L622 706 aa26.26■■□□□ 1.79
VPS28-205ENST00000526204 SLC4A10Q6U841 1118 aa26.26■■□□□ 1.79
VPS28-205ENST00000526204 RABEP1Q15276 862 aa26.25■■□□□ 1.79
VPS28-205ENST00000526204 RGPD8O14715 1765 aaPredicted RBP26.25■■□□□ 1.79
VPS28-205ENST00000526204 KCNA6P17658 529 aa26.24■■□□□ 1.79
VPS28-205ENST00000526204 PLPPR3Q6T4P5 718 aa26.24■■□□□ 1.79
VPS28-205ENST00000526204 RAB3GAP1Q15042 981 aa26.24■■□□□ 1.79
VPS28-205ENST00000526204 GBP4Q96PP9 640 aa26.24■■□□□ 1.79
VPS28-205ENST00000526204 FER1L4A9Z1Z3 1794 aa26.23■■□□□ 1.79
VPS28-205ENST00000526204 GNAI2P04899 355 aa26.23■■□□□ 1.79
VPS28-205ENST00000526204 LRRC37A3O60309 1634 aa26.23■■□□□ 1.79
VPS28-205ENST00000526204 CD2BP2O95400 341 aaKnown RBP26.23■■□□□ 1.79
VPS28-205ENST00000526204 SDSP20132 328 aa26.23■■□□□ 1.79
VPS28-205ENST00000526204 PTMSP20962 102 aa26.23■■□□□ 1.79
VPS28-205ENST00000526204 USP26Q9BXU7 913 aa26.23■■□□□ 1.79
VPS28-205ENST00000526204 RTN4Q9NQC3 1192 aaKnown RBP26.23■■□□□ 1.79
VPS28-205ENST00000526204 F6X3S4 739 aa26.22■■□□□ 1.79
VPS28-205ENST00000526204 ABTB2Q8N961 1025 aa26.22■■□□□ 1.79
VPS28-205ENST00000526204 OTUD7AQ8TE49 926 aaPredicted RBP26.22■■□□□ 1.79
VPS28-205ENST00000526204 TNPO1Q92973 898 aaKnown RBP26.22■■□□□ 1.79
VPS28-205ENST00000526204 OSBPL3Q9H4L5 887 aa26.22■■□□□ 1.79
VPS28-205ENST00000526204 MAP3K5Q99683 1374 aa26.22■■□□□ 1.79
VPS28-205ENST00000526204 USP54Q70EL1 1684 aa26.22■■□□□ 1.79
VPS28-205ENST00000526204 GOLGA6L3A6NEY3 463 aa26.21■■□□□ 1.79
VPS28-205ENST00000526204 SMARCA5O60264 1052 aaPredicted RBP26.21■■□□□ 1.79
VPS28-205ENST00000526204 GNAI3P08754 354 aa26.21■■□□□ 1.79
VPS28-205ENST00000526204 RBM42Q9BTD8 480 aaKnown RBP26.21■■□□□ 1.79
VPS28-205ENST00000526204 FSD2A1L4K1 749 aa26.2■■□□□ 1.79
VPS28-205ENST00000526204 FLIIQ13045 1269 aa26.2■■□□□ 1.79
VPS28-205ENST00000526204 APBB1O00213 710 aa26.19■■□□□ 1.78
VPS28-205ENST00000526204 TAF7Q15545 349 aaPredicted RBP26.19■■□□□ 1.78
VPS28-205ENST00000526204 NWD1Q149M9 1564 aa26.18■■□□□ 1.78
VPS28-205ENST00000526204 REC8O95072 547 aa26.18■■□□□ 1.78
VPS28-205ENST00000526204 FKBP5Q13451 457 aaPredicted RBP26.17■■□□□ 1.78
VPS28-205ENST00000526204 NUTM2GQ5VZR2 741 aa26.17■■□□□ 1.78
VPS28-205ENST00000526204 IL17REQ8NFR9 667 aa26.17■■□□□ 1.78
VPS28-205ENST00000526204 SKOR2Q2VWA4 1001 aaPredicted RBP26.16■■□□□ 1.78
VPS28-205ENST00000526204 GZF1Q9H116 711 aaPredicted RBP26.15■■□□□ 1.78
VPS28-205ENST00000526204 ISY1Q9ULR0 285 aaKnown RBP26.15■■□□□ 1.78
VPS28-205ENST00000526204 PDE1AP54750 535 aa26.15■■□□□ 1.78
VPS28-205ENST00000526204 MARF1Q9Y4F3 1742 aaKnown RBP26.14■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms