RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 CCDC146Q8IYE0 955 aa6.17□□□□□ -1.42
CHMP4A-202ENST00000524955 ZCRB1Q8TBF4 217 aaKnown RBP6.17□□□□□ -1.42
CHMP4A-202ENST00000524955 FAM208AQ9UK61 1670 aaKnown RBP6.17□□□□□ -1.42
CHMP4A-202ENST00000524955 CYP27B1O15528 508 aa6.16□□□□□ -1.42
CHMP4A-202ENST00000524955 PRKAR2BP31323 418 aa6.16□□□□□ -1.42
CHMP4A-202ENST00000524955 ZNF530Q6P9A1 599 aaPredicted RBP6.16□□□□□ -1.42
CHMP4A-202ENST00000524955 MIER1Q8N108 512 aa6.16□□□□□ -1.42
CHMP4A-202ENST00000524955 UPF1Q92900 1129 aaKnown RBP eCLIP6.16□□□□□ -1.42
CHMP4A-202ENST00000524955 SYTL4Q96C24 671 aaPredicted RBP6.16□□□□□ -1.42
CHMP4A-202ENST00000524955 PHACTR3Q96KR7 559 aa6.16□□□□□ -1.42
CHMP4A-202ENST00000524955 MRS2Q9HD23 443 aa6.16□□□□□ -1.42
CHMP4A-202ENST00000524955 NUDCQ9Y266 331 aa6.16□□□□□ -1.42
CHMP4A-202ENST00000524955 THSD7AQ9UPZ6 1657 aa6.16□□□□□ -1.42
CHMP4A-202ENST00000524955 OVOS2A0A0G2JMS6 1433 aa6.16□□□□□ -1.42
CHMP4A-202ENST00000524955 TNS2Q63HR2 1409 aa6.16□□□□□ -1.42
CHMP4A-202ENST00000524955 LRRC37A3O60309 1634 aa6.15□□□□□ -1.42
CHMP4A-202ENST00000524955 MTHFSDQ2M296 383 aaKnown RBP6.15□□□□□ -1.42
CHMP4A-202ENST00000524955 DEFB132Q7Z7B7 95 aa6.15□□□□□ -1.42
CHMP4A-202ENST00000524955 RSPH6AQ9H0K4 717 aa6.15□□□□□ -1.42
CHMP4A-202ENST00000524955 SPG7Q9UQ90 795 aa6.15□□□□□ -1.42
CHMP4A-202ENST00000524955 RRP7AQ9Y3A4 280 aaKnown RBP6.15□□□□□ -1.42
CHMP4A-202ENST00000524955 BRWD3Q6RI45 1802 aa6.15□□□□□ -1.43
CHMP4A-202ENST00000524955 PHKG2P15735 406 aa6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 PRIM1P49642 420 aaKnown RBP6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 KCNQ4P56696 695 aa6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 DCTN1Q14203 1278 aa6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 WDR43Q15061 677 aaKnown RBP eCLIP6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 NEUROD2Q15784 382 aa6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 PLEKHO1Q53GL0 409 aaPredicted RBP6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 MPRIPQ6WCQ1 1025 aa6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 FAM9BQ8IZU0 186 aa6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 CDCA7Q9BWT1 371 aaPredicted RBP6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 LGR6Q9HBX8 967 aa6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 ADAMTS8Q9UP79 889 aa6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 NCAPD2Q15021 1401 aa6.14□□□□□ -1.43
CHMP4A-202ENST00000524955 SOCS7O14512 581 aa6.13□□□□□ -1.43
CHMP4A-202ENST00000524955 APBA3O96018 575 aa6.13□□□□□ -1.43
CHMP4A-202ENST00000524955 EN1Q05925 392 aaPredicted RBP6.13□□□□□ -1.43
CHMP4A-202ENST00000524955 FAM196AQ6ZSG2 479 aa6.13□□□□□ -1.43
CHMP4A-202ENST00000524955 SALL2Q9Y467 1007 aaPredicted RBP6.13□□□□□ -1.43
CHMP4A-202ENST00000524955 PCDH11XQ9BZA7 1347 aa6.13□□□□□ -1.43
CHMP4A-202ENST00000524955 PCDH11YQ9BZA8 1340 aa6.13□□□□□ -1.43
CHMP4A-202ENST00000524955 RGPD1P0DJD0 1748 aa6.12□□□□□ -1.43
CHMP4A-202ENST00000524955 KDRP35968 1356 aa6.12□□□□□ -1.43
CHMP4A-202ENST00000524955 SF3B2Q13435 895 aaKnown RBP6.12□□□□□ -1.43
CHMP4A-202ENST00000524955 EZH2Q15910 746 aaKnown RBP6.12□□□□□ -1.43
CHMP4A-202ENST00000524955 AMOTQ4VCS5 1084 aa6.12□□□□□ -1.43
CHMP4A-202ENST00000524955 C1orf141Q5JVX7 400 aa6.12□□□□□ -1.43
CHMP4A-202ENST00000524955 MCM10Q7L590 875 aa6.12□□□□□ -1.43
CHMP4A-202ENST00000524955 IFNL2Q8IZJ0 200 aa6.12□□□□□ -1.43
CHMP4A-202ENST00000524955 PLEKHF1Q96S99 279 aa6.12□□□□□ -1.43
CHMP4A-202ENST00000524955 THUMPD2Q9BTF0 503 aaKnown RBP6.12□□□□□ -1.43
CHMP4A-202ENST00000524955 WNK3Q9BYP7 1800 aa6.12□□□□□ -1.43
CHMP4A-202ENST00000524955 PARP4Q9UKK3 1724 aaKnown RBP6.12□□□□□ -1.43
CHMP4A-202ENST00000524955 RNMTO43148 476 aaKnown RBP6.11□□□□□ -1.43
CHMP4A-202ENST00000524955 FCHSD2O94868 740 aa6.11□□□□□ -1.43
CHMP4A-202ENST00000524955 PNISRQ8TF01 805 aaKnown RBP6.11□□□□□ -1.43
CHMP4A-202ENST00000524955 PIGBQ92521 554 aa6.11□□□□□ -1.43
CHMP4A-202ENST00000524955 KDM6AO15550 1401 aaPredicted RBP6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 MAPK8IP3Q9UPT6 1336 aa6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 APAF1O14727 1248 aa6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 CABP4P57796 275 aa6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 SLC39A6Q13433 755 aa6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 AKAP4Q5JQC9 854 aa6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 SMIM5Q71RC9 77 aa6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 NFATC2IPQ8NCF5 419 aa6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 IL17REQ8NFR9 667 aa6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 BCL11BQ9C0K0 894 aaPredicted RBP6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.1□□□□□ -1.436e-7■□□□□ 9
CHMP4A-202ENST00000524955 MIS18AQ9NYP9 233 aa6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 ASAP1Q9ULH1 1129 aa6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 SHANK3Q9BYB0 1731 aa6.1□□□□□ -1.43
CHMP4A-202ENST00000524955 MAP3K5Q99683 1374 aa6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 GNAT3A8MTJ3 354 aa6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 KCNQ3O43525 872 aa6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 PTCD1O75127 700 aaKnown RBP6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 NEFMP07197 916 aa6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 TMPOP42166 694 aaKnown RBP6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 BAG6P46379 1132 aa6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 RIPK4P57078 832 aa6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 NKX1-1Q15270 411 aaPredicted RBP6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 NFE2L2Q16236 605 aa6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 PROM2Q8N271 834 aa6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 GAS2L2Q8NHY3 880 aa6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 RUNDC1Q96C34 613 aa6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 DCAF5Q96JK2 942 aa6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 TMOD3Q9NYL9 352 aa6.09□□□□□ -1.43
CHMP4A-202ENST00000524955 PKD1L3Q7Z443 1732 aa6.08□□□□□ -1.44
CHMP4A-202ENST00000524955 PSDA5PKW4 1024 aaPredicted RBP6.08□□□□□ -1.44
CHMP4A-202ENST00000524955 TXNRD1Q16881 649 aa6.08□□□□□ -1.44
CHMP4A-202ENST00000524955 RTF1Q92541 710 aaKnown RBP6.08□□□□□ -1.44
CHMP4A-202ENST00000524955 CAMKK2Q96RR4 588 aa6.08□□□□□ -1.44
CHMP4A-202ENST00000524955 RBM42Q9BTD8 480 aaKnown RBP6.08□□□□□ -1.44
CHMP4A-202ENST00000524955 SLC52A2Q9HAB3 445 aa6.08□□□□□ -1.44
CHMP4A-202ENST00000524955 ATG3Q9NT62 314 aa6.08□□□□□ -1.44
CHMP4A-202ENST00000524955 LRRC4BQ9NT99 713 aa6.08□□□□□ -1.44
CHMP4A-202ENST00000524955 LAS1LQ9Y4W2 734 aaKnown RBP6.08□□□□□ -1.44
CHMP4A-202ENST00000524955 DOT1LQ8TEK3 1739 aa6.08□□□□□ -1.44
CHMP4A-202ENST00000524955 TOGARAM1Q9Y4F4 1720 aa6.08□□□□□ -1.44
CHMP4A-202ENST00000524955 PALLDQ8WX93 1383 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms