RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 PLEKHG1Q9ULL1 1385 aa13.77□□□□□ -0.2
HDAC9-228ENST00000524023 GOLGA6L3A6NEY3 463 aa13.77□□□□□ -0.21
HDAC9-228ENST00000524023 CD2BP2O95400 341 aaKnown RBP13.77□□□□□ -0.21
HDAC9-228ENST00000524023 LTKP29376 864 aa13.77□□□□□ -0.21
HDAC9-228ENST00000524023 RPAP2Q8IXW5 612 aaPredicted RBP13.77□□□□□ -0.21
HDAC9-228ENST00000524023 PTPRCP08575 1304 aa13.77□□□□□ -0.21
HDAC9-228ENST00000524023 CRB1P82279 1406 aa13.77□□□□□ -0.21
HDAC9-228ENST00000524023 FAM43AQ8N2R8 423 aa13.76□□□□□ -0.21
HDAC9-228ENST00000524023 GZF1Q9H116 711 aaPredicted RBP13.76□□□□□ -0.21
HDAC9-228ENST00000524023 SSH2Q76I76 1423 aa13.76□□□□□ -0.21
HDAC9-228ENST00000524023 TTC22Q5TAA0 569 aa13.76□□□□□ -0.21
HDAC9-228ENST00000524023 CEP85Q6P2H3 762 aa13.76□□□□□ -0.21
HDAC9-228ENST00000524023 TNPO1Q92973 898 aaKnown RBP13.76□□□□□ -0.21
HDAC9-228ENST00000524023 RBM42Q9BTD8 480 aaKnown RBP13.76□□□□□ -0.21
HDAC9-228ENST00000524023 MSH6P52701 1360 aa13.76□□□□□ -0.21
HDAC9-228ENST00000524023 RTL1A6NKG5 1358 aa13.75□□□□□ -0.21
HDAC9-228ENST00000524023 K7ELQ4 463 aaPredicted RBP13.75□□□□□ -0.21
HDAC9-228ENST00000524023 EIF5BO60841 1220 aaKnown RBP13.75□□□□□ -0.21
HDAC9-228ENST00000524023 FMN2Q9NZ56 1722 aa13.75□□□□□ -0.21
HDAC9-228ENST00000524023 PTPRUQ92729 1446 aa13.75□□□□□ -0.21
HDAC9-228ENST00000524023 ARHGEF10O15013 1369 aa13.75□□□□□ -0.21
HDAC9-228ENST00000524023 XRCC6P12956 609 aaKnown RBP eCLIP13.75□□□□□ -0.21
HDAC9-228ENST00000524023 RAB3GAP1Q15042 981 aa13.75□□□□□ -0.21
HDAC9-228ENST00000524023 C16orf71Q8IYS4 520 aaPredicted RBP13.75□□□□□ -0.21
HDAC9-228ENST00000524023 MAP3K19Q56UN5 1328 aa13.74□□□□□ -0.21
HDAC9-228ENST00000524023 SOX12O15370 315 aa13.73□□□□□ -0.21
HDAC9-228ENST00000524023 TTC21AQ8NDW8 1320 aa13.73□□□□□ -0.21
HDAC9-228ENST00000524023 SLC4A2P04920 1241 aa13.73□□□□□ -0.21
HDAC9-228ENST00000524023 HSP90AA1P07900 732 aaKnown RBP13.73□□□□□ -0.21
HDAC9-228ENST00000524023 MEIS3Q99687 375 aa13.73□□□□□ -0.21
HDAC9-228ENST00000524023 MTHFSDQ2M296 383 aaKnown RBP13.72□□□□□ -0.21
HDAC9-228ENST00000524023 OTUD7AQ8TE49 926 aaPredicted RBP13.72□□□□□ -0.21
HDAC9-228ENST00000524023 GBP4Q96PP9 640 aa13.72□□□□□ -0.21
HDAC9-228ENST00000524023 ARXQ96QS3 562 aa13.72□□□□□ -0.21
HDAC9-228ENST00000524023 SLC26A8Q96RN1 970 aa13.72□□□□□ -0.21
HDAC9-228ENST00000524023 MIS18AQ9NYP9 233 aa13.72□□□□□ -0.21
HDAC9-228ENST00000524023 RIMS1Q86UR5 1692 aaKnown RBP13.72□□□□□ -0.21
HDAC9-228ENST00000524023 FOXO3O43524 673 aa13.72□□□□□ -0.21
HDAC9-228ENST00000524023 ANO8Q9HCE9 1232 aaPredicted RBP13.72□□□□□ -0.21
HDAC9-228ENST00000524023 FOXD4L1Q9NU39 408 aa13.72□□□□□ -0.21
HDAC9-228ENST00000524023 SBNO1A3KN83 1393 aa13.71□□□□□ -0.21
HDAC9-228ENST00000524023 FLT4P35916 1363 aa13.71□□□□□ -0.21
HDAC9-228ENST00000524023 KDRP35968 1356 aa13.71□□□□□ -0.21
HDAC9-228ENST00000524023 SMARCA5O60264 1052 aaPredicted RBP13.71□□□□□ -0.22
HDAC9-228ENST00000524023 GAS2L2Q8NHY3 880 aa13.71□□□□□ -0.22
HDAC9-228ENST00000524023 RTF1Q92541 710 aaKnown RBP13.71□□□□□ -0.22
HDAC9-228ENST00000524023 USP26Q9BXU7 913 aa13.71□□□□□ -0.22
HDAC9-228ENST00000524023 TSPYL4Q9UJ04 414 aa13.71□□□□□ -0.22
HDAC9-228ENST00000524023 RGPD8O14715 1765 aaPredicted RBP13.7□□□□□ -0.22
HDAC9-228ENST00000524023 RABEP1Q15276 862 aa13.7□□□□□ -0.22
HDAC9-228ENST00000524023 AMOTL2Q9Y2J4 779 aa13.7□□□□□ -0.22
HDAC9-228ENST00000524023 SDSP20132 328 aa13.69□□□□□ -0.22
HDAC9-228ENST00000524023 G2E3Q7L622 706 aa13.69□□□□□ -0.22
HDAC9-228ENST00000524023 APBB1O00213 710 aa13.69□□□□□ -0.22
HDAC9-228ENST00000524023 MRE11P49959 708 aa13.69□□□□□ -0.22
HDAC9-228ENST00000524023 PANK2Q9BZ23 570 aa13.69□□□□□ -0.22
HDAC9-228ENST00000524023 EID1Q9Y6B2 187 aa13.69□□□□□ -0.22
HDAC9-228ENST00000524023 IGSF1Q8N6C5 1336 aa13.68□□□□□ -0.22
HDAC9-228ENST00000524023 HMMRO75330 724 aa13.68□□□□□ -0.22
HDAC9-228ENST00000524023 PTMSP20962 102 aa13.68□□□□□ -0.22
HDAC9-228ENST00000524023 CCT4P50991 539 aaKnown RBP13.68□□□□□ -0.22
HDAC9-228ENST00000524023 EYA1Q99502 592 aa13.68□□□□□ -0.22
HDAC9-228ENST00000524023 ISY1Q9ULR0 285 aaKnown RBP13.68□□□□□ -0.22
HDAC9-228ENST00000524023 CEP170BQ9Y4F5 1589 aaPredicted RBP13.68□□□□□ -0.22
HDAC9-228ENST00000524023 PIK3C2AO00443 1686 aa13.68□□□□□ -0.22
HDAC9-228ENST00000524023 DIP2AQ14689 1571 aa13.68□□□□□ -0.22
HDAC9-228ENST00000524023 SKOR2Q2VWA4 1001 aaPredicted RBP13.68□□□□□ -0.22
HDAC9-228ENST00000524023 SLC4A10Q6U841 1118 aa13.68□□□□□ -0.22
HDAC9-228ENST00000524023 NGDNQ8NEJ9 315 aaKnown RBP13.68□□□□□ -0.22
HDAC9-228ENST00000524023 F6X3S4 739 aa13.67□□□□□ -0.22
HDAC9-228ENST00000524023 AMPHP49418 695 aa13.67□□□□□ -0.22
HDAC9-228ENST00000524023 CEBPAP49715 358 aaPredicted RBP13.67□□□□□ -0.22
HDAC9-228ENST00000524023 CASC1Q6TDU7 716 aa13.67□□□□□ -0.22
HDAC9-228ENST00000524023 TBX22Q9Y458 520 aa13.67□□□□□ -0.22
HDAC9-228ENST00000524023 SLIT1O75093 1534 aa13.67□□□□□ -0.22
HDAC9-228ENST00000524023 ARHGAP23Q9P227 1491 aa13.67□□□□□ -0.22
HDAC9-228ENST00000524023 SSFA2P28290 1259 aa13.66□□□□□ -0.22
HDAC9-228ENST00000524023 CLEC17AQ6ZS10 378 aa13.66□□□□□ -0.22
HDAC9-228ENST00000524023 AK9Q5TCS8 1911 aa13.66□□□□□ -0.22
HDAC9-228ENST00000524023 GRPEL1Q9HAV7 217 aa13.66□□□□□ -0.22
HDAC9-228ENST00000524023 RRAGDQ9NQL2 400 aaPredicted RBP13.66□□□□□ -0.22
HDAC9-228ENST00000524023 LRRC37A3O60309 1634 aa13.66□□□□□ -0.22
HDAC9-228ENST00000524023 HTATSF1O43719 755 aaKnown RBP13.65□□□□□ -0.22
HDAC9-228ENST00000524023 OSBPL3Q9H4L5 887 aa13.65□□□□□ -0.22
HDAC9-228ENST00000524023 STK31Q9BXU1 1019 aa13.65□□□□□ -0.22
HDAC9-228ENST00000524023 GNAI2P04899 355 aa13.64□□□□□ -0.23
HDAC9-228ENST00000524023 FAM208AQ9UK61 1670 aaKnown RBP13.64□□□□□ -0.23
HDAC9-228ENST00000524023 CACNA1FO60840 1977 aa13.64□□□□□ -0.23
HDAC9-228ENST00000524023 REC8O95072 547 aa13.64□□□□□ -0.23
HDAC9-228ENST00000524023 PDE1AP54750 535 aa13.64□□□□□ -0.23
HDAC9-228ENST00000524023 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.64□□□□□ -0.23
HDAC9-228ENST00000524023 XRN1Q8IZH2 1706 aaKnown RBP13.63□□□□□ -0.23
HDAC9-228ENST00000524023 BAG4O95429 457 aaKnown RBP13.63□□□□□ -0.23
HDAC9-228ENST00000524023 NLRP6P59044 892 aa13.63□□□□□ -0.23
HDAC9-228ENST00000524023 GNAT3A8MTJ3 354 aa13.62□□□□□ -0.23
HDAC9-228ENST00000524023 GOLGA6L22H0YM25 854 aa13.62□□□□□ -0.23
HDAC9-228ENST00000524023 ERC2O15083 957 aa13.62□□□□□ -0.23
HDAC9-228ENST00000524023 FLIIQ13045 1269 aa13.62□□□□□ -0.23
HDAC9-228ENST00000524023 CCDC30Q5VVM6 783 aa13.62□□□□□ -0.23
HDAC9-228ENST00000524023 MARF1Q9Y4F3 1742 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms