RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 MLH3Q9UHC1 1453 aa9.05□□□□□ -0.96
HDAC9-227ENST00000523867 NOL7Q9UMY1 257 aaKnown RBP9.04□□□□□ -0.96
HDAC9-227ENST00000523867 ADGRB3O60242 1522 aa9.04□□□□□ -0.96
HDAC9-227ENST00000523867 QRICH2Q9H0J4 1663 aa9.04□□□□□ -0.96
HDAC9-227ENST00000523867 IBTKQ9P2D0 1353 aaPredicted RBP9.04□□□□□ -0.96
HDAC9-227ENST00000523867 EVC2Q86UK5 1308 aa9.04□□□□□ -0.96
HDAC9-227ENST00000523867 CT47B1P0C2W7 299 aaPredicted RBP9.04□□□□□ -0.96
HDAC9-227ENST00000523867 ZC3H15Q8WU90 426 aaKnown RBP9.04□□□□□ -0.96
HDAC9-227ENST00000523867 LMTK2Q8IWU2 1503 aa9.04□□□□□ -0.96
HDAC9-227ENST00000523867 RPGRIP1LQ68CZ1 1315 aa9.03□□□□□ -0.96
HDAC9-227ENST00000523867 TSR2Q969E8 191 aaKnown RBP9.03□□□□□ -0.96
HDAC9-227ENST00000523867 SMC4Q9NTJ3 1288 aa9.03□□□□□ -0.96
HDAC9-227ENST00000523867 NSD2O96028 1365 aa9.03□□□□□ -0.96
HDAC9-227ENST00000523867 ANKRD36BQ8N2N9 1353 aa9.03□□□□□ -0.96
HDAC9-227ENST00000523867 GGT6Q6P531 493 aa9.03□□□□□ -0.96
HDAC9-227ENST00000523867 EVI5LQ96CN4 794 aa9.03□□□□□ -0.96
HDAC9-227ENST00000523867 USP32Q8NFA0 1604 aa9.03□□□□□ -0.96
HDAC9-227ENST00000523867 ADGRB1O14514 1584 aa9.03□□□□□ -0.96
HDAC9-227ENST00000523867 SETD1BQ9UPS6 1966 aaKnown RBP9.03□□□□□ -0.96
HDAC9-227ENST00000523867 C22orf23Q9BZE7 217 aa9.02□□□□□ -0.96
HDAC9-227ENST00000523867 DIP2CQ9Y2E4 1556 aa9.02□□□□□ -0.97
HDAC9-227ENST00000523867 U2SURPO15042 1029 aaKnown RBP9.02□□□□□ -0.97
HDAC9-227ENST00000523867 IRX3P78415 501 aaPredicted RBP9.02□□□□□ -0.97
HDAC9-227ENST00000523867 EXOSC9Q06265 439 aaKnown RBP9.02□□□□□ -0.97
HDAC9-227ENST00000523867 DNTTIP2Q5QJE6 756 aaKnown RBP9.02□□□□□ -0.97
HDAC9-227ENST00000523867 ITPRIPQ8IWB1 547 aa9.02□□□□□ -0.97
HDAC9-227ENST00000523867 DDX19BQ9UMR2 479 aa9.02□□□□□ -0.97
HDAC9-227ENST00000523867 STRCQ7RTU9 1775 aa9.02□□□□□ -0.97
HDAC9-227ENST00000523867 NPATQ14207 1427 aa9.02□□□□□ -0.97
HDAC9-227ENST00000523867 ZC3H13Q5T200 1668 aaKnown RBP9.02□□□□□ -0.97
HDAC9-227ENST00000523867 TRIM27P14373 513 aa9.01□□□□□ -0.97
HDAC9-227ENST00000523867 HDAC1Q13547 482 aaPredicted RBP9.01□□□□□ -0.97
HDAC9-227ENST00000523867 CABP2Q9NPB3 220 aa9.01□□□□□ -0.97
HDAC9-227ENST00000523867 HSPA2P54652 639 aa9.01□□□□□ -0.97
HDAC9-227ENST00000523867 WDR70Q9NW82 654 aa9.01□□□□□ -0.97
HDAC9-227ENST00000523867 NUTM2DQ5VT03 806 aaPredicted RBP9.01□□□□□ -0.97
HDAC9-227ENST00000523867 ATF7IPQ6VMQ6 1270 aa9.01□□□□□ -0.97
HDAC9-227ENST00000523867 SSH1Q8WYL5 1049 aa9.01□□□□□ -0.97
HDAC9-227ENST00000523867 SIRT1Q96EB6 747 aa9.01□□□□□ -0.97
HDAC9-227ENST00000523867 PPME1Q9Y570 386 aa9.01□□□□□ -0.97
HDAC9-227ENST00000523867 KIDINS220Q9ULH0 1771 aa9□□□□□ -0.97
HDAC9-227ENST00000523867 PPLO60437 1756 aa9□□□□□ -0.97
HDAC9-227ENST00000523867 SOCS7O14512 581 aa9□□□□□ -0.97
HDAC9-227ENST00000523867 TMPOP42166 694 aaKnown RBP9□□□□□ -0.97
HDAC9-227ENST00000523867 APBB1IPQ7Z5R6 666 aaPredicted RBP9□□□□□ -0.97
HDAC9-227ENST00000523867 NASPP49321 788 aaPredicted RBP9□□□□□ -0.97
HDAC9-227ENST00000523867 SAFB2Q14151 953 aaKnown RBP eCLIP9□□□□□ -0.97
HDAC9-227ENST00000523867 PLCD3Q8N3E9 789 aa9□□□□□ -0.97
HDAC9-227ENST00000523867 PLEKHF1Q96S99 279 aa9□□□□□ -0.97
HDAC9-227ENST00000523867 RBM27Q9P2N5 1060 aaKnown RBP9□□□□□ -0.97
HDAC9-227ENST00000523867 NOB1Q9ULX3 412 aaKnown RBP9□□□□□ -0.97
HDAC9-227ENST00000523867 ADGRB2O60241 1585 aa8.99□□□□□ -0.97
HDAC9-227ENST00000523867 SPATA31D1Q6ZQQ2 1576 aa8.99□□□□□ -0.97
HDAC9-227ENST00000523867 TRIM35Q9UPQ4 493 aa8.99□□□□□ -0.97
HDAC9-227ENST00000523867 STK24Q9Y6E0 443 aa8.99□□□□□ -0.97
HDAC9-227ENST00000523867 C3P01024 1663 aa8.99□□□□□ -0.97
HDAC9-227ENST00000523867 VGLL3A8MV65 326 aa8.99□□□□□ -0.97
HDAC9-227ENST00000523867 GTF2F1P35269 517 aaKnown RBP eCLIP8.99□□□□□ -0.97
HDAC9-227ENST00000523867 MMP14P50281 582 aa8.99□□□□□ -0.97
HDAC9-227ENST00000523867 SRPK2P78362 688 aaKnown RBP8.99□□□□□ -0.97
HDAC9-227ENST00000523867 GAS2L3Q86XJ1 694 aa8.99□□□□□ -0.97
HDAC9-227ENST00000523867 HSCBQ8IWL3 235 aa8.99□□□□□ -0.97
HDAC9-227ENST00000523867 MYRIPQ8NFW9 859 aa8.99□□□□□ -0.97
HDAC9-227ENST00000523867 GGNBP2Q9H3C7 697 aa8.99□□□□□ -0.97
HDAC9-227ENST00000523867 TULP4Q9NRJ4 1543 aa8.98□□□□□ -0.97
HDAC9-227ENST00000523867 CFAP65Q6ZU64 1925 aaKnown RBP8.98□□□□□ -0.97
HDAC9-227ENST00000523867 IPO8O15397 1037 aaKnown RBP8.98□□□□□ -0.97
HDAC9-227ENST00000523867 TPD52L2O43399 206 aaKnown RBP8.98□□□□□ -0.97
HDAC9-227ENST00000523867 SMC5Q8IY18 1101 aa8.98□□□□□ -0.97
HDAC9-227ENST00000523867 SPATA32Q96LK8 384 aa8.98□□□□□ -0.97
HDAC9-227ENST00000523867 PRIMPOLQ96LW4 560 aa8.98□□□□□ -0.97
HDAC9-227ENST00000523867 SUGT1Q9Y2Z0 365 aa8.98□□□□□ -0.97
HDAC9-227ENST00000523867 LTBP4Q8N2S1 1624 aa8.98□□□□□ -0.97
HDAC9-227ENST00000523867 HMGN5P82970 282 aaKnown RBP8.98□□□□□ -0.97
HDAC9-227ENST00000523867 TMEM57Q8N5G2 664 aa8.98□□□□□ -0.97
HDAC9-227ENST00000523867 CIZ1Q9ULV3 898 aaPredicted RBP8.98□□□□□ -0.97
HDAC9-227ENST00000523867 IL16Q14005 1332 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 A0A1W2PP64 1363 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 ABCC11Q96J66 1382 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 PHF14O94880 888 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 ZNF662Q6ZS27 426 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 PDLIM2Q96JY6 352 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 GBP4Q96PP9 640 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 TSPYL1Q9H0U9 437 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 ZBTB40Q9NUA8 1239 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 ZKSCAN5Q9Y2L8 839 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 KIF16BQ96L93 1317 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 NME8Q8N427 588 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 STK26Q9P289 416 aa8.97□□□□□ -0.97
HDAC9-227ENST00000523867 HSP90AB1P08238 724 aaKnown RBP8.96□□□□□ -0.97
HDAC9-227ENST00000523867 ANKRD13AQ8IZ07 590 aa8.96□□□□□ -0.97
HDAC9-227ENST00000523867 ESF1Q9H501 851 aaKnown RBP8.96□□□□□ -0.97
HDAC9-227ENST00000523867 TERF2IPQ9NYB0 399 aa8.96□□□□□ -0.97
HDAC9-227ENST00000523867 ZNF142P52746 1687 aaPredicted RBP8.96□□□□□ -0.98
HDAC9-227ENST00000523867 NCOA3Q9Y6Q9 1424 aa8.96□□□□□ -0.98
HDAC9-227ENST00000523867 YY1AP1Q9H869 796 aa8.96□□□□□ -0.98
HDAC9-227ENST00000523867 FYB1O15117 783 aa8.95□□□□□ -0.98
HDAC9-227ENST00000523867 DIAPH1O60610 1272 aaKnown RBP8.95□□□□□ -0.98
HDAC9-227ENST00000523867 IRX5P78411 483 aaPredicted RBP8.95□□□□□ -0.98
HDAC9-227ENST00000523867 NUCB1Q02818 461 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms