RNA–Protein interactions for RNA: ENST00000522843.5

SDCBP-210, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-210ENST00000522843 HNRNPMP52272 730 aaKnown RBP eCLIP11.08□□□□□ -0.64
SDCBP-210ENST00000522843 GGT6Q6P531 493 aa11.08□□□□□ -0.64
SDCBP-210ENST00000522843 HLA-CQ95604 372 aa11.08□□□□□ -0.64
SDCBP-210ENST00000522843 ATP7AQ04656 1500 aa11.08□□□□□ -0.64
SDCBP-210ENST00000522843 SPAG9O60271 1321 aaKnown RBP11.08□□□□□ -0.64
SDCBP-210ENST00000522843 IRF6O14896 467 aa11.07□□□□□ -0.64
SDCBP-210ENST00000522843 POTEAQ6S8J7 498 aa11.07□□□□□ -0.64
SDCBP-210ENST00000522843 LRRC7Q96NW7 1537 aa11.06□□□□□ -0.64
SDCBP-210ENST00000522843 MDM2Q00987 491 aaPredicted RBP11.06□□□□□ -0.64
SDCBP-210ENST00000522843 FBXO31Q5XUX0 539 aaPredicted RBP11.06□□□□□ -0.64
SDCBP-210ENST00000522843 MED14O60244 1454 aa11.06□□□□□ -0.64
SDCBP-210ENST00000522843 HOXA2O43364 376 aa11.05□□□□□ -0.64
SDCBP-210ENST00000522843 LCE2CQ5TA81 110 aa11.05□□□□□ -0.64
SDCBP-210ENST00000522843 ZNF777Q9ULD5 760 aaPredicted RBP11.05□□□□□ -0.64
SDCBP-210ENST00000522843 GPATCH8Q9UKJ3 1502 aaKnown RBP11.04□□□□□ -0.64
SDCBP-210ENST00000522843 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.04□□□□□ -0.64
SDCBP-210ENST00000522843 NPHP4O75161 1426 aaPredicted RBP11.04□□□□□ -0.64
SDCBP-210ENST00000522843 TNRQ92752 1358 aa11.03□□□□□ -0.64
SDCBP-210ENST00000522843 RNF17Q9BXT8 1623 aaKnown RBP11.03□□□□□ -0.64
SDCBP-210ENST00000522843 ALDH1A1P00352 501 aa11.03□□□□□ -0.64
SDCBP-210ENST00000522843 JUNDP17535 347 aa11.03□□□□□ -0.64
SDCBP-210ENST00000522843 ANKLE2Q86XL3 938 aa11.02□□□□□ -0.65
SDCBP-210ENST00000522843 MINK1Q8N4C8 1332 aaPredicted RBP11.02□□□□□ -0.65
SDCBP-210ENST00000522843 DEPDC5O75140 1603 aa11.02□□□□□ -0.65
SDCBP-210ENST00000522843 KIAA1107Q9UPP5 1409 aa11.01□□□□□ -0.65
SDCBP-210ENST00000522843 SETD1AO15047 1707 aaKnown RBP11.01□□□□□ -0.65
SDCBP-210ENST00000522843 PZPP20742 1482 aa11□□□□□ -0.65
SDCBP-210ENST00000522843 GUCA2AQ02747 115 aa11□□□□□ -0.65
SDCBP-210ENST00000522843 SYMPKQ92797 1274 aaKnown RBP11□□□□□ -0.65
SDCBP-210ENST00000522843 IQGAP1P46940 1657 aa11□□□□□ -0.65
SDCBP-210ENST00000522843 ADGBQ8N7X0 1667 aa11□□□□□ -0.65
SDCBP-210ENST00000522843 CASKIN1Q8WXD9 1431 aa11□□□□□ -0.65
SDCBP-210ENST00000522843 CCDC18Q5T9S5 1454 aa11□□□□□ -0.65
SDCBP-210ENST00000522843 SYNMO15061 1565 aa10.99□□□□□ -0.65
SDCBP-210ENST00000522843 XIRP1Q702N8 1843 aaKnown RBP10.98□□□□□ -0.65
SDCBP-210ENST00000522843 SIAH2O43255 324 aa10.98□□□□□ -0.65
SDCBP-210ENST00000522843 PTCRAQ6ISU1 281 aaPredicted RBP10.98□□□□□ -0.65
SDCBP-210ENST00000522843 RETREG3Q86VR2 466 aa10.98□□□□□ -0.65
SDCBP-210ENST00000522843 SLC16A10Q8TF71 515 aa10.98□□□□□ -0.65
SDCBP-210ENST00000522843 NUDT12Q9BQG2 462 aa10.98□□□□□ -0.65
SDCBP-210ENST00000522843 MIA2Q96PC5 1412 aa10.98□□□□□ -0.65
SDCBP-210ENST00000522843 UGGT1Q9NYU2 1555 aa10.98□□□□□ -0.65
SDCBP-210ENST00000522843 ZC3H13Q5T200 1668 aaKnown RBP10.98□□□□□ -0.65
SDCBP-210ENST00000522843 UBTFP17480 764 aaKnown RBP10.97□□□□□ -0.65
SDCBP-210ENST00000522843 NUTM1Q86Y26 1132 aa10.97□□□□□ -0.65
SDCBP-210ENST00000522843 THEMISQ8N1K5 641 aaPredicted RBP10.97□□□□□ -0.65
SDCBP-210ENST00000522843 EHBP1Q8NDI1 1231 aa10.97□□□□□ -0.65
SDCBP-210ENST00000522843 GPCPD1Q9NPB8 672 aa10.97□□□□□ -0.65
SDCBP-210ENST00000522843 NLRP1Q9C000 1473 aa10.97□□□□□ -0.65
SDCBP-210ENST00000522843 KDM5DQ9BY66 1539 aa10.96□□□□□ -0.65
SDCBP-210ENST00000522843 PLEKHH2Q8IVE3 1493 aa10.96□□□□□ -0.65
SDCBP-210ENST00000522843 MBD5Q9P267 1494 aa10.96□□□□□ -0.65
SDCBP-210ENST00000522843 DHX29Q7Z478 1369 aaKnown RBP10.96□□□□□ -0.65
SDCBP-210ENST00000522843 ZNF644Q9H582 1327 aaPredicted RBP10.96□□□□□ -0.65
SDCBP-210ENST00000522843 TULP1O00294 542 aaPredicted RBP10.96□□□□□ -0.65
SDCBP-210ENST00000522843 CLCN1P35523 988 aa10.96□□□□□ -0.65
SDCBP-210ENST00000522843 FAM217BQ9NTX9 383 aaPredicted RBP10.96□□□□□ -0.65
SDCBP-210ENST00000522843 NXF1Q9UBU9 619 aaKnown RBP10.96□□□□□ -0.65
SDCBP-210ENST00000522843 FAM135AQ9P2D6 1515 aa10.95□□□□□ -0.66
SDCBP-210ENST00000522843 CCDC102AQ96A19 550 aa10.95□□□□□ -0.66
SDCBP-210ENST00000522843 CFDP1Q9UEE9 299 aaPredicted RBP10.95□□□□□ -0.66
SDCBP-210ENST00000522843 WASF2Q9Y6W5 498 aa10.95□□□□□ -0.66
SDCBP-210ENST00000522843 FAM135BQ49AJ0 1406 aa10.94□□□□□ -0.66
SDCBP-210ENST00000522843 CAPN5O15484 640 aaPredicted RBP10.94□□□□□ -0.66
SDCBP-210ENST00000522843 SRCAPQ6ZRS2 3230 aa10.94□□□□□ -0.66
SDCBP-210ENST00000522843 KIF3BO15066 747 aa10.93□□□□□ -0.66
SDCBP-210ENST00000522843 TRIM46Q7Z4K8 759 aa10.93□□□□□ -0.66
SDCBP-210ENST00000522843 RTEL1-TNFRSF6BF6WH68 1400 aa10.92□□□□□ -0.66
SDCBP-210ENST00000522843 BMP1P13497 986 aa10.92□□□□□ -0.66
SDCBP-210ENST00000522843 NPAS3Q8IXF0 933 aa10.92□□□□□ -0.66
SDCBP-210ENST00000522843 FAM181BA6NEQ2 426 aa10.91□□□□□ -0.66
SDCBP-210ENST00000522843 FDX1P10109 184 aa10.91□□□□□ -0.66
SDCBP-210ENST00000522843 SH3BP2P78314 561 aa10.91□□□□□ -0.66
SDCBP-210ENST00000522843 KRI1Q8N9T8 703 aaKnown RBP10.91□□□□□ -0.66
SDCBP-210ENST00000522843 FYCO1Q9BQS8 1478 aa10.91□□□□□ -0.66
SDCBP-210ENST00000522843 CCNB3Q8WWL7 1395 aa10.9□□□□□ -0.66
SDCBP-210ENST00000522843 WASHC2CQ9Y4E1 1318 aa10.9□□□□□ -0.66
SDCBP-210ENST00000522843 C6orf229H3BNL8 230 aa10.9□□□□□ -0.66
SDCBP-210ENST00000522843 CCNYL3P0C7X3 344 aa10.9□□□□□ -0.66
SDCBP-210ENST00000522843 MS4A1P11836 297 aa10.9□□□□□ -0.66
SDCBP-210ENST00000522843 PCDHGC3Q9UN70 934 aa10.9□□□□□ -0.66
SDCBP-210ENST00000522843 NCOA2Q15596 1464 aa10.89□□□□□ -0.67
SDCBP-210ENST00000522843 LTKP29376 864 aa10.89□□□□□ -0.67
SDCBP-210ENST00000522843 IRF7Q92985 503 aa10.89□□□□□ -0.67
SDCBP-210ENST00000522843 TIAM1Q13009 1591 aa10.89□□□□□ -0.67
SDCBP-210ENST00000522843 ROBO1Q9Y6N7 1651 aa10.89□□□□□ -0.67
SDCBP-210ENST00000522843 GMPRP36959 345 aa10.88□□□□□ -0.67
SDCBP-210ENST00000522843 UBR1Q8IWV7 1749 aa10.88□□□□□ -0.67
SDCBP-210ENST00000522843 ERVK-7P63135 1459 aa10.87□□□□□ -0.67
SDCBP-210ENST00000522843 SCAF11Q99590 1463 aaKnown RBP10.87□□□□□ -0.67
SDCBP-210ENST00000522843 ARHGAP23Q9P227 1491 aa10.87□□□□□ -0.67
SDCBP-210ENST00000522843 EVA1BQ9NVM1 165 aa10.87□□□□□ -0.67
SDCBP-210ENST00000522843 MAP3K1Q13233 1512 aa10.87□□□□□ -0.67
SDCBP-210ENST00000522843 ABCC3O15438 1527 aa10.86□□□□□ -0.67
SDCBP-210ENST00000522843 PTPRNQ16849 979 aa10.86□□□□□ -0.67
SDCBP-210ENST00000522843 UNC93B1Q9H1C4 597 aa10.86□□□□□ -0.67
SDCBP-210ENST00000522843 TMEM94Q12767 1356 aa10.86□□□□□ -0.67
SDCBP-210ENST00000522843 SLIT1O75093 1534 aa10.85□□□□□ -0.67
SDCBP-210ENST00000522843 LRP6O75581 1613 aa10.85□□□□□ -0.67
SDCBP-210ENST00000522843 ZSCAN1Q8NBB4 408 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms