RNA–Protein interactions for RNA: ENST00000522246.5

CD74-208, Transcript of CD74 molecule, human

TSL 4

Gene CD74, Length 563 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD74-208	ENST00000522246	RGPD2	P0DJD1	1756 aa		13.83	□□□□□ -0.19
CD74-208	ENST00000522246	CRB1	P82279	1406 aa		13.83	□□□□□ -0.2
CD74-208	ENST00000522246	LARP1	Q6PKG0	1096 aa	Known RBP	13.83	□□□□□ -0.2
CD74-208	ENST00000522246	TRMT2A	Q8IZ69	625 aa	Known RBP	13.83	□□□□□ -0.2
CD74-208	ENST00000522246	NGLY1	Q96IV0	654 aa		13.83	□□□□□ -0.2
CD74-208	ENST00000522246	AKAP4	Q5JQC9	854 aa		13.82	□□□□□ -0.2
CD74-208	ENST00000522246	C1orf141	Q5JVX7	400 aa		13.82	□□□□□ -0.2
CD74-208	ENST00000522246	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.82	□□□□□ -0.2
CD74-208	ENST00000522246	THRAP3	Q9Y2W1	955 aa	Known RBP	13.82	□□□□□ -0.2
CD74-208	ENST00000522246	IL2RB	P14784	551 aa		13.81	□□□□□ -0.2
CD74-208	ENST00000522246	GNAI1	P63096	354 aa		13.81	□□□□□ -0.2
CD74-208	ENST00000522246	MEX3C	Q5U5Q3	659 aa	Known RBP	13.81	□□□□□ -0.2
CD74-208	ENST00000522246	UNC5CL	Q8IV45	518 aa		13.81	□□□□□ -0.2
CD74-208	ENST00000522246	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.81	□□□□□ -0.2
CD74-208	ENST00000522246	CDCA7L	Q96GN5	454 aa		13.81	□□□□□ -0.2
CD74-208	ENST00000522246	HSP90AB1	P08238	724 aa	Known RBP	13.8	□□□□□ -0.2
CD74-208	ENST00000522246	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.8	□□□□□ -0.2
CD74-208	ENST00000522246	FBXO41	Q8TF61	875 aa		13.8	□□□□□ -0.2
CD74-208	ENST00000522246	IFT57	Q9NWB7	429 aa		13.8	□□□□□ -0.2
CD74-208	ENST00000522246	BABAM1	Q9NWV8	329 aa		13.8	□□□□□ -0.2
CD74-208	ENST00000522246	NWD2	Q9ULI1	1742 aa		13.8	□□□□□ -0.2
CD74-208	ENST00000522246	SLIT2	O94813	1529 aa		13.8	□□□□□ -0.2
CD74-208	ENST00000522246	DUSP27	Q5VZP5	1158 aa		13.79	□□□□□ -0.2
CD74-208	ENST00000522246	IFNL2	Q8IZJ0	200 aa		13.79	□□□□□ -0.2
CD74-208	ENST00000522246	ZCRB1	Q8TBF4	217 aa	Known RBP	13.79	□□□□□ -0.2
CD74-208	ENST00000522246	CFAP44	Q96MT7	982 aa		13.79	□□□□□ -0.2
CD74-208	ENST00000522246	C8orf37	Q96NL8	207 aa		13.79	□□□□□ -0.2
CD74-208	ENST00000522246	DLG5	Q8TDM6	1919 aa		13.79	□□□□□ -0.2
CD74-208	ENST00000522246	MAP3K5	Q99683	1374 aa		13.79	□□□□□ -0.2
CD74-208	ENST00000522246	CT47B1	P0C2W7	299 aa	Predicted RBP	13.78	□□□□□ -0.2
CD74-208	ENST00000522246	VPS72	Q15906	364 aa		13.77	□□□□□ -0.21
CD74-208	ENST00000522246	PLCH1	Q4KWH8	1693 aa		13.76	□□□□□ -0.21
CD74-208	ENST00000522246	OVOS2	A0A0G2JMS6	1433 aa		13.76	□□□□□ -0.21
CD74-208	ENST00000522246	SPATA31A1	Q5TZJ5	1347 aa		13.76	□□□□□ -0.21
CD74-208	ENST00000522246	SPATA31A5	Q5VU36	1347 aa		13.76	□□□□□ -0.21
CD74-208	ENST00000522246	SPATA31A7	Q8IWB4	1347 aa		13.76	□□□□□ -0.21
CD74-208	ENST00000522246	ZNF853	P0CG23	659 aa		13.76	□□□□□ -0.21
CD74-208	ENST00000522246	MCM10	Q7L590	875 aa		13.76	□□□□□ -0.21
CD74-208	ENST00000522246	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.76	□□□□□ -0.21
CD74-208	ENST00000522246	USP21	Q9UK80	565 aa		13.76	□□□□□ -0.21
CD74-208	ENST00000522246	PCDH11X	Q9BZA7	1347 aa		13.75	□□□□□ -0.21
CD74-208	ENST00000522246	PCDH11Y	Q9BZA8	1340 aa		13.75	□□□□□ -0.21
CD74-208	ENST00000522246	EXOC5	O00471	708 aa		13.75	□□□□□ -0.21
CD74-208	ENST00000522246	CHL1	O00533	1208 aa		13.75	□□□□□ -0.21
CD74-208	ENST00000522246	PHKG2	P15735	406 aa		13.75	□□□□□ -0.21
CD74-208	ENST00000522246	TAF7	Q15545	349 aa	Predicted RBP	13.75	□□□□□ -0.21
CD74-208	ENST00000522246	BARGIN	Q6ZT62	677 aa		13.75	□□□□□ -0.21
CD74-208	ENST00000522246	IL17RE	Q8NFR9	667 aa		13.75	□□□□□ -0.21
CD74-208	ENST00000522246	USP35	Q9P2H5	1018 aa		13.75	□□□□□ -0.21
CD74-208	ENST00000522246	CCDC9	Q9Y3X0	531 aa	Known RBP	13.75	□□□□□ -0.21
CD74-208	ENST00000522246	PARP4	Q9UKK3	1724 aa	Known RBP	13.74	□□□□□ -0.21
CD74-208	ENST00000522246	RNMT	O43148	476 aa	Known RBP	13.74	□□□□□ -0.21
CD74-208	ENST00000522246	DCTN1	Q14203	1278 aa		13.74	□□□□□ -0.21
CD74-208	ENST00000522246	DCAF5	Q96JK2	942 aa		13.74	□□□□□ -0.21
CD74-208	ENST00000522246	LAS1L	Q9Y4W2	734 aa	Known RBP	13.74	□□□□□ -0.21
CD74-208	ENST00000522246	MEGF6	O75095	1541 aa		13.74	□□□□□ -0.21
CD74-208	ENST00000522246	CEMIP	Q8WUJ3	1361 aa		13.73	□□□□□ -0.21
CD74-208	ENST00000522246	TEF	Q10587	303 aa		13.73	□□□□□ -0.21
CD74-208	ENST00000522246	NKX1-1	Q15270	411 aa	Predicted RBP	13.73	□□□□□ -0.21
CD74-208	ENST00000522246	ZNF428	Q96B54	188 aa		13.73	□□□□□ -0.21
CD74-208	ENST00000522246	THUMPD2	Q9BTF0	503 aa	Known RBP	13.73	□□□□□ -0.21
CD74-208	ENST00000522246	RCAN3	Q9UKA8	241 aa		13.73	□□□□□ -0.21
CD74-208	ENST00000522246	BCL9L	Q86UU0	1499 aa		13.73	□□□□□ -0.21
CD74-208	ENST00000522246	NRAP	Q86VF7	1730 aa		13.73	□□□□□ -0.21
CD74-208	ENST00000522246	LRP6	O75581	1613 aa		13.72	□□□□□ -0.21
CD74-208	ENST00000522246	FANCI	Q9NVI1	1328 aa		13.72	□□□□□ -0.21
CD74-208	ENST00000522246	CYP27B1	O15528	508 aa		13.72	□□□□□ -0.21
CD74-208	ENST00000522246	MPRIP	Q6WCQ1	1025 aa		13.72	□□□□□ -0.21
CD74-208	ENST00000522246	CHMP4A	Q9BY43	222 aa		13.72	□□□□□ -0.21
CD74-208	ENST00000522246	TRPC5	Q9UL62	973 aa	Predicted RBP	13.72	□□□□□ -0.21
CD74-208	ENST00000522246	PKD1L3	Q7Z443	1732 aa		13.71	□□□□□ -0.21
CD74-208	ENST00000522246	ERVV-2	B6SEH9	535 aa		13.71	□□□□□ -0.21
CD74-208	ENST00000522246	LGR6	Q9HBX8	967 aa		13.71	□□□□□ -0.21
CD74-208	ENST00000522246	MBIP	Q9NS73	344 aa		13.71	□□□□□ -0.21
CD74-208	ENST00000522246	DISP2	A7MBM2	1401 aa		13.71	□□□□□ -0.22
CD74-208	ENST00000522246	AFF2	P51816	1311 aa		13.7	□□□□□ -0.22
CD74-208	ENST00000522246	SOS1	Q07889	1333 aa	Predicted RBP	13.7	□□□□□ -0.22
CD74-208	ENST00000522246	DDB1	Q16531	1140 aa		13.7	□□□□□ -0.22
CD74-208	ENST00000522246	DDX54	Q8TDD1	881 aa	Known RBP	13.7	□□□□□ -0.22
CD74-208	ENST00000522246	TSR2	Q969E8	191 aa	Known RBP	13.7	□□□□□ -0.22
CD74-208	ENST00000522246	TSPYL4	Q9UJ04	414 aa		13.7	□□□□□ -0.22
CD74-208	ENST00000522246	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.7	□□□□□ -0.22
CD74-208	ENST00000522246	EXOSC9	Q06265	439 aa	Known RBP	13.69	□□□□□ -0.22
CD74-208	ENST00000522246	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.69	□□□□□ -0.22
CD74-208	ENST00000522246	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.69	□□□□□ -0.22
CD74-208	ENST00000522246	BTBD11	A6QL63	1104 aa		13.68	□□□□□ -0.22
CD74-208	ENST00000522246	NEFL	P07196	543 aa		13.68	□□□□□ -0.22
CD74-208	ENST00000522246	ZNF772	Q68DY9	489 aa	Predicted RBP	13.68	□□□□□ -0.22
CD74-208	ENST00000522246	GJD4	Q96KN9	370 aa	Predicted RBP	13.68	□□□□□ -0.22
CD74-208	ENST00000522246	SLC52A2	Q9HAB3	445 aa		13.68	□□□□□ -0.22
CD74-208	ENST00000522246	CABP4	P57796	275 aa		13.67	□□□□□ -0.22
CD74-208	ENST00000522246	QTRT2	Q9H974	415 aa	Known RBP	13.67	□□□□□ -0.22
CD74-208	ENST00000522246	ONECUT3	O60422	494 aa	Predicted RBP	13.66	□□□□□ -0.22
CD74-208	ENST00000522246	ALDH1L2	Q3SY69	923 aa		13.66	□□□□□ -0.22
CD74-208	ENST00000522246	ADAMTS7	Q9UKP4	1686 aa		13.66	□□□□□ -0.22
CD74-208	ENST00000522246	SCN11A	Q9UI33	1791 aa		13.66	□□□□□ -0.22
CD74-208	ENST00000522246	RNF123	Q5XPI4	1314 aa		13.65	□□□□□ -0.22
CD74-208	ENST00000522246	ATRN	O75882	1429 aa		13.65	□□□□□ -0.22
CD74-208	ENST00000522246	VAMP4	O75379	141 aa		13.65	□□□□□ -0.22
CD74-208	ENST00000522246	RARS	P54136	660 aa	Known RBP	13.65	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms