RNA–Protein interactions for RNA: ENST00000519535.1

SCUBE2-205, Transcript of signal peptide, CUB domain and EGF like domain containing 2, human

TSL 3

Gene SCUBE2, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCUBE2-205	ENST00000519535	ANKRD26	Q9UPS8	1709 aa		18.67	■□□□□ 0.58
SCUBE2-205	ENST00000519535	PER1	O15534	1290 aa	Predicted RBP	18.67	■□□□□ 0.58
SCUBE2-205	ENST00000519535	ZCRB1	Q8TBF4	217 aa	Known RBP	18.67	■□□□□ 0.58
SCUBE2-205	ENST00000519535	EYA1	Q99502	592 aa		18.67	■□□□□ 0.58
SCUBE2-205	ENST00000519535	NSD2	O96028	1365 aa		18.67	■□□□□ 0.58
SCUBE2-205	ENST00000519535	EIF4A2	Q14240	407 aa	Known RBP	18.66	■□□□□ 0.58
SCUBE2-205	ENST00000519535	TXNRD1	Q16881	649 aa		18.65	■□□□□ 0.58
SCUBE2-205	ENST00000519535	NHS	Q6T4R5	1651 aa		18.65	■□□□□ 0.58
SCUBE2-205	ENST00000519535	CYP27B1	O15528	508 aa		18.64	■□□□□ 0.57
SCUBE2-205	ENST00000519535	PRIM1	P49642	420 aa	Known RBP	18.63	■□□□□ 0.57
SCUBE2-205	ENST00000519535	LRRC4B	Q9NT99	713 aa		18.63	■□□□□ 0.57
SCUBE2-205	ENST00000519535	SMG6	Q86US8	1419 aa	Known RBP	18.63	■□□□□ 0.57
SCUBE2-205	ENST00000519535	KCNQ4	P56696	695 aa		18.62	■□□□□ 0.57
SCUBE2-205	ENST00000519535	MORC1	Q86VD1	984 aa		18.61	■□□□□ 0.57
SCUBE2-205	ENST00000519535	TAT	P17735	454 aa	Predicted RBP	18.6	■□□□□ 0.57
SCUBE2-205	ENST00000519535	RAPGEF4	Q8WZA2	1011 aa		18.6	■□□□□ 0.57
SCUBE2-205	ENST00000519535	KNSTRN	Q9Y448	316 aa		18.6	■□□□□ 0.57
SCUBE2-205	ENST00000519535	AEBP1	Q8IUX7	1158 aa		18.59	■□□□□ 0.57
SCUBE2-205	ENST00000519535	MAP2	P11137	1827 aa	Known RBP	18.58	■□□□□ 0.57
SCUBE2-205	ENST00000519535	RGPD3	A6NKT7	1758 aa	Predicted RBP	18.58	■□□□□ 0.57
SCUBE2-205	ENST00000519535	RGPD4	Q7Z3J3	1758 aa		18.58	■□□□□ 0.57
SCUBE2-205	ENST00000519535	ZNF827	Q17R98	1081 aa		18.58	■□□□□ 0.56
SCUBE2-205	ENST00000519535	CC2D1B	Q5T0F9	858 aa	Known RBP	18.58	■□□□□ 0.56
SCUBE2-205	ENST00000519535	BTAF1	O14981	1849 aa		18.58	■□□□□ 0.56
SCUBE2-205	ENST00000519535	SYTL4	Q96C24	671 aa	Predicted RBP	18.57	■□□□□ 0.56
SCUBE2-205	ENST00000519535	IGSF1	Q8N6C5	1336 aa		18.56	■□□□□ 0.56
SCUBE2-205	ENST00000519535	CNGB1	Q14028	1251 aa	Predicted RBP	18.56	■□□□□ 0.56
SCUBE2-205	ENST00000519535	NBPF14	Q5TI25	921 aa		18.56	■□□□□ 0.56
SCUBE2-205	ENST00000519535	LRP5	O75197	1615 aa		18.56	■□□□□ 0.56
SCUBE2-205	ENST00000519535	PAPPA	Q13219	1627 aa		18.56	■□□□□ 0.56
SCUBE2-205	ENST00000519535	DOT1L	Q8TEK3	1739 aa		18.55	■□□□□ 0.56
SCUBE2-205	ENST00000519535	IL13	P35225	146 aa		18.54	■□□□□ 0.56
SCUBE2-205	ENST00000519535	TOGARAM1	Q9Y4F4	1720 aa		18.54	■□□□□ 0.56
SCUBE2-205	ENST00000519535	PCDH11X	Q9BZA7	1347 aa		18.53	■□□□□ 0.56
SCUBE2-205	ENST00000519535	PCDH11Y	Q9BZA8	1340 aa		18.53	■□□□□ 0.56
SCUBE2-205	ENST00000519535	SLC15A2	Q16348	729 aa		18.53	■□□□□ 0.56
SCUBE2-205	ENST00000519535	PKD1L3	Q7Z443	1732 aa		18.52	■□□□□ 0.56
SCUBE2-205	ENST00000519535	MTHFS	P49914	203 aa		18.52	■□□□□ 0.56
SCUBE2-205	ENST00000519535	CASZ1	Q86V15	1759 aa		18.51	■□□□□ 0.55
SCUBE2-205	ENST00000519535	ZBTB7A	O95365	584 aa		18.51	■□□□□ 0.55
SCUBE2-205	ENST00000519535	NKX1-1	Q15270	411 aa	Predicted RBP	18.51	■□□□□ 0.55
SCUBE2-205	ENST00000519535	AKT1S1	Q96B36	256 aa		18.51	■□□□□ 0.55
SCUBE2-205	ENST00000519535	PHKG2	P15735	406 aa		18.5	■□□□□ 0.55
SCUBE2-205	ENST00000519535	MPRIP	Q6WCQ1	1025 aa		18.49	■□□□□ 0.55
SCUBE2-205	ENST00000519535	PIGB	Q92521	554 aa		18.49	■□□□□ 0.55
SCUBE2-205	ENST00000519535	STK32B	Q9NY57	414 aa		18.49	■□□□□ 0.55
SCUBE2-205	ENST00000519535	COL3A1	P02461	1466 aa	Predicted RBP	18.47	■□□□□ 0.55
SCUBE2-205	ENST00000519535	PTGER2	P43116	358 aa		18.47	■□□□□ 0.55
SCUBE2-205	ENST00000519535	SULT6B1	Q6IMI4	303 aa		18.47	■□□□□ 0.55
SCUBE2-205	ENST00000519535	AMIGO3	Q86WK7	504 aa		18.47	■□□□□ 0.55
SCUBE2-205	ENST00000519535	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	18.47	■□□□□ 0.55
SCUBE2-205	ENST00000519535	SPG7	Q9UQ90	795 aa		18.47	■□□□□ 0.55
SCUBE2-205	ENST00000519535	ATF5	Q9Y2D1	282 aa	Predicted RBP	18.47	■□□□□ 0.55
SCUBE2-205	ENST00000519535	NPC1L1	Q9UHC9	1359 aa		18.46	■□□□□ 0.55
SCUBE2-205	ENST00000519535	KDR	P35968	1356 aa		18.45	■□□□□ 0.54
SCUBE2-205	ENST00000519535	SMIM5	Q71RC9	77 aa		18.45	■□□□□ 0.54
SCUBE2-205	ENST00000519535	KDM6A	O15550	1401 aa	Predicted RBP	18.45	■□□□□ 0.54
SCUBE2-205	ENST00000519535	SLC27A3	Q5K4L6	730 aa		18.44	■□□□□ 0.54
SCUBE2-205	ENST00000519535	SGIP1	Q9BQI5	828 aa		18.44	■□□□□ 0.54
SCUBE2-205	ENST00000519535	CCNL1	Q9UK58	526 aa	Predicted RBP	18.44	■□□□□ 0.54
SCUBE2-205	ENST00000519535	KAT6B	Q8WYB5	2073 aa		18.44	■□□□□ 0.54
SCUBE2-205	ENST00000519535	PNPLA7	Q6ZV29	1317 aa		18.44	■□□□□ 0.54
SCUBE2-205	ENST00000519535	PALLD	Q8WX93	1383 aa		18.43	■□□□□ 0.54
SCUBE2-205	ENST00000519535	HMOX1	P09601	288 aa		18.43	■□□□□ 0.54
SCUBE2-205	ENST00000519535	IFNL2	Q8IZJ0	200 aa		18.43	■□□□□ 0.54
SCUBE2-205	ENST00000519535	SPON1	Q9HCB6	807 aa		18.43	■□□□□ 0.54
SCUBE2-205	ENST00000519535	ASAP1	Q9ULH1	1129 aa		18.43	■□□□□ 0.54
SCUBE2-205	ENST00000519535	UTRN	P46939	3433 aa		18.43	■□□□□ 0.54
SCUBE2-205	ENST00000519535	LY75	O60449	1722 aa		18.43	■□□□□ 0.54
SCUBE2-205	ENST00000519535	ZNF530	Q6P9A1	599 aa	Predicted RBP	18.41	■□□□□ 0.54
SCUBE2-205	ENST00000519535	SLC4A9	Q96Q91	983 aa		18.41	■□□□□ 0.54
SCUBE2-205	ENST00000519535	ATG3	Q9NT62	314 aa		18.4	■□□□□ 0.54
SCUBE2-205	ENST00000519535	ITPK1	Q13572	414 aa		18.39	■□□□□ 0.53
SCUBE2-205	ENST00000519535	PLEKHO1	Q53GL0	409 aa	Predicted RBP	18.39	■□□□□ 0.53
SCUBE2-205	ENST00000519535	ITGB4	P16144	1822 aa		18.38	■□□□□ 0.53
SCUBE2-205	ENST00000519535	DIAPH1	O60610	1272 aa	Known RBP	18.38	■□□□□ 0.53
SCUBE2-205	ENST00000519535	LINC00116	Q8NCU8	138 aa		18.38	■□□□□ 0.53
SCUBE2-205	ENST00000519535	PPP2R1A	P30153	589 aa		18.37	■□□□□ 0.53
SCUBE2-205	ENST00000519535	COL23A1	Q86Y22	540 aa	Predicted RBP	18.37	■□□□□ 0.53
SCUBE2-205	ENST00000519535	MTFR1L	Q9H019	292 aa		18.37	■□□□□ 0.53
SCUBE2-205	ENST00000519535	TMOD3	Q9NYL9	352 aa		18.37	■□□□□ 0.53
SCUBE2-205	ENST00000519535	PLEKHG2	Q9H7P9	1386 aa		18.37	■□□□□ 0.53
SCUBE2-205	ENST00000519535	TUBGCP6	Q96RT7	1819 aa		18.37	■□□□□ 0.53
SCUBE2-205	ENST00000519535	MTHFSD	Q2M296	383 aa	Known RBP	18.36	■□□□□ 0.53
SCUBE2-205	ENST00000519535	LGR6	Q9HBX8	967 aa		18.36	■□□□□ 0.53
SCUBE2-205	ENST00000519535	TFCP2L1	Q9NZI6	479 aa		18.36	■□□□□ 0.53
SCUBE2-205	ENST00000519535	GOLGB1	Q14789	3259 aa	Known RBP	18.35	■□□□□ 0.53
SCUBE2-205	ENST00000519535	LOC102724428	A0A0B4J2F2	783 aa		18.35	■□□□□ 0.53
SCUBE2-205	ENST00000519535	SIK1	P57059	783 aa		18.35	■□□□□ 0.53
SCUBE2-205	ENST00000519535	AMOT	Q4VCS5	1084 aa		18.35	■□□□□ 0.53
SCUBE2-205	ENST00000519535	DCAF5	Q96JK2	942 aa		18.34	■□□□□ 0.53
SCUBE2-205	ENST00000519535	ERVV-2	B6SEH9	535 aa		18.33	■□□□□ 0.52
SCUBE2-205	ENST00000519535	SMARCC1	Q92922	1105 aa	Predicted RBP	18.33	■□□□□ 0.52
SCUBE2-205	ENST00000519535	PPP1R1B	Q9UD71	204 aa	Predicted RBP	18.32	■□□□□ 0.52
SCUBE2-205	ENST00000519535	U2SURP	O15042	1029 aa	Known RBP	18.31	■□□□□ 0.52
SCUBE2-205	ENST00000519535	MSL1	Q68DK7	614 aa		18.31	■□□□□ 0.52
SCUBE2-205	ENST00000519535	NFATC2IP	Q8NCF5	419 aa		18.31	■□□□□ 0.52
SCUBE2-205	ENST00000519535	PHACTR3	Q96KR7	559 aa		18.31	■□□□□ 0.52
SCUBE2-205	ENST00000519535	FHDC1	Q9C0D6	1143 aa	Predicted RBP	18.31	■□□□□ 0.52
SCUBE2-205	ENST00000519535	CABP4	P57796	275 aa		18.3	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms