RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 MCM10Q7L590 875 aa18.62■□□□□ 0.57
NUP54-217ENST00000514987 ANKLE2Q86XL3 938 aa18.62■□□□□ 0.57
NUP54-217ENST00000514987 C22orf23Q9BZE7 217 aa18.62■□□□□ 0.57
NUP54-217ENST00000514987 CHD2O14647 1828 aaKnown RBP18.62■□□□□ 0.57
NUP54-217ENST00000514987 SOS1Q07889 1333 aaPredicted RBP18.62■□□□□ 0.57
NUP54-217ENST00000514987 LNPKQ9C0E8 428 aa18.61■□□□□ 0.57
NUP54-217ENST00000514987 RTL1A6NKG5 1358 aa18.61■□□□□ 0.57
NUP54-217ENST00000514987 ANKRD45Q5TZF3 282 aa18.6■□□□□ 0.57
NUP54-217ENST00000514987 SOX12O15370 315 aa18.59■□□□□ 0.57
NUP54-217ENST00000514987 MTHFSDQ2M296 383 aaKnown RBP18.59■□□□□ 0.57
NUP54-217ENST00000514987 RPAP2Q8IXW5 612 aaPredicted RBP18.59■□□□□ 0.57
NUP54-217ENST00000514987 EYA1Q99502 592 aa18.59■□□□□ 0.57
NUP54-217ENST00000514987 BABAM1Q9NWV8 329 aa18.59■□□□□ 0.57
NUP54-217ENST00000514987 MARF1Q9Y4F3 1742 aaKnown RBP18.59■□□□□ 0.57
NUP54-217ENST00000514987 LRRC37A3O60309 1634 aa18.57■□□□□ 0.56
NUP54-217ENST00000514987 RGS12O14924 1447 aa18.57■□□□□ 0.56
NUP54-217ENST00000514987 TRHP20396 242 aaPredicted RBP18.57■□□□□ 0.56
NUP54-217ENST00000514987 HOXC9P31274 260 aa18.57■□□□□ 0.56
NUP54-217ENST00000514987 SIRT2Q8IXJ6 389 aa18.57■□□□□ 0.56
NUP54-217ENST00000514987 TSPYL4Q9UJ04 414 aa18.57■□□□□ 0.56
NUP54-217ENST00000514987 MFAP1P55081 439 aaKnown RBP18.56■□□□□ 0.56
NUP54-217ENST00000514987 ANKRD44Q8N8A2 993 aa18.56■□□□□ 0.56
NUP54-217ENST00000514987 ABTB2Q8N961 1025 aa18.56■□□□□ 0.56
NUP54-217ENST00000514987 DCTPP1Q9H773 170 aa18.56■□□□□ 0.56
NUP54-217ENST00000514987 PHF8Q9UPP1 1060 aa18.56■□□□□ 0.56
NUP54-217ENST00000514987 C1orf115Q9H7X2 142 aa18.55■□□□□ 0.56
NUP54-217ENST00000514987 GNAT3A8MTJ3 354 aa18.55■□□□□ 0.56
NUP54-217ENST00000514987 RBM25P49756 843 aaKnown RBP18.55■□□□□ 0.56
NUP54-217ENST00000514987 TBC1D2Q9BYX2 928 aa18.55■□□□□ 0.56
NUP54-217ENST00000514987 CCT4P50991 539 aaKnown RBP18.54■□□□□ 0.56
NUP54-217ENST00000514987 SLC4A2P04920 1241 aa18.53■□□□□ 0.56
NUP54-217ENST00000514987 SETD1BQ9UPS6 1966 aaKnown RBP18.53■□□□□ 0.56
NUP54-217ENST00000514987 NWD1Q149M9 1564 aa18.53■□□□□ 0.56
NUP54-217ENST00000514987 STK31Q9BXU1 1019 aa18.52■□□□□ 0.56
NUP54-217ENST00000514987 ADGRL3Q9HAR2 1447 aa18.52■□□□□ 0.56
NUP54-217ENST00000514987 MAP3K5Q99683 1374 aa18.52■□□□□ 0.56
NUP54-217ENST00000514987 CACNA1FO60840 1977 aa18.52■□□□□ 0.55
NUP54-217ENST00000514987 FOXO3O43524 673 aa18.51■□□□□ 0.55
NUP54-217ENST00000514987 KRT24Q2M2I5 525 aa18.51■□□□□ 0.55
NUP54-217ENST00000514987 ANTXR1Q9H6X2 564 aa18.51■□□□□ 0.55
NUP54-217ENST00000514987 ATP10DQ9P241 1426 aa18.51■□□□□ 0.55
NUP54-217ENST00000514987 HMMRO75330 724 aa18.51■□□□□ 0.55
NUP54-217ENST00000514987 GSE1Q14687 1217 aa18.51■□□□□ 0.55
NUP54-217ENST00000514987 CCDC30Q5VVM6 783 aa18.51■□□□□ 0.55
NUP54-217ENST00000514987 KCNH5Q8NCM2 988 aa18.51■□□□□ 0.55
NUP54-217ENST00000514987 CHMP4AQ9BY43 222 aa18.51■□□□□ 0.55
NUP54-217ENST00000514987 ADAMTSL3P82987 1691 aa18.5■□□□□ 0.55
NUP54-217ENST00000514987 PHRF1Q9P1Y6 1649 aaKnown RBP18.5■□□□□ 0.55
NUP54-217ENST00000514987 LTN1O94822 1766 aa18.49■□□□□ 0.55
NUP54-217ENST00000514987 CEP85Q6P2H3 762 aa18.49■□□□□ 0.55
NUP54-217ENST00000514987 HSCBQ8IWL3 235 aa18.49■□□□□ 0.55
NUP54-217ENST00000514987 IP6K1Q92551 441 aa18.49■□□□□ 0.55
NUP54-217ENST00000514987 SNX21Q969T3 373 aa18.49■□□□□ 0.55
NUP54-217ENST00000514987 MSH6P52701 1360 aa18.49■□□□□ 0.55
NUP54-217ENST00000514987 CDC45O75419 566 aa18.48■□□□□ 0.55
NUP54-217ENST00000514987 FRAT2O75474 233 aaPredicted RBP18.47■□□□□ 0.55
NUP54-217ENST00000514987 TAF7Q15545 349 aaPredicted RBP18.47■□□□□ 0.55
NUP54-217ENST00000514987 NFAT5O94916 1531 aa18.47■□□□□ 0.55
NUP54-217ENST00000514987 PSME1Q06323 249 aa18.47■□□□□ 0.55
NUP54-217ENST00000514987 MIS18AQ9NYP9 233 aa18.47■□□□□ 0.55
NUP54-217ENST00000514987 FAM208AQ9UK61 1670 aaKnown RBP18.46■□□□□ 0.55
NUP54-217ENST00000514987 NUTM2GQ5VZR2 741 aa18.46■□□□□ 0.55
NUP54-217ENST00000514987 C14orf37Q86TY3 774 aa18.46■□□□□ 0.55
NUP54-217ENST00000514987 PLEKHM2Q8IWE5 1019 aa18.46■□□□□ 0.55
NUP54-217ENST00000514987 NPHP4O75161 1426 aaPredicted RBP18.46■□□□□ 0.54
NUP54-217ENST00000514987 TBC1D9Q6ZT07 1266 aa18.45■□□□□ 0.54
NUP54-217ENST00000514987 SLKQ9H2G2 1235 aaPredicted RBP18.45■□□□□ 0.54
NUP54-217ENST00000514987 GNAI3P08754 354 aa18.44■□□□□ 0.54
NUP54-217ENST00000514987 MEIS3Q99687 375 aa18.44■□□□□ 0.54
NUP54-217ENST00000514987 CHMP5Q9NZZ3 219 aa18.44■□□□□ 0.54
NUP54-217ENST00000514987 N4BP2Q86UW6 1770 aaPredicted RBP18.44■□□□□ 0.54
NUP54-217ENST00000514987 PXDNLA1KZ92 1463 aa18.44■□□□□ 0.54
NUP54-217ENST00000514987 TTC22Q5TAA0 569 aa18.43■□□□□ 0.54
NUP54-217ENST00000514987 IL17REQ8NFR9 667 aa18.43■□□□□ 0.54
NUP54-217ENST00000514987 BCL11AQ9H165 835 aa18.43■□□□□ 0.54
NUP54-217ENST00000514987 GNAI2P04899 355 aa18.42■□□□□ 0.54
NUP54-217ENST00000514987 ESCO1Q5FWF5 840 aa18.42■□□□□ 0.54
NUP54-217ENST00000514987 CASC1Q6TDU7 716 aa18.42■□□□□ 0.54
NUP54-217ENST00000514987 G2E3Q7L622 706 aa18.42■□□□□ 0.54
NUP54-217ENST00000514987 LTV1Q96GA3 475 aaPredicted RBP18.42■□□□□ 0.54
NUP54-217ENST00000514987 CEMIPQ8WUJ3 1361 aa18.41■□□□□ 0.54
NUP54-217ENST00000514987 HOXB7P09629 217 aa18.41■□□□□ 0.54
NUP54-217ENST00000514987 FLIIQ13045 1269 aa18.41■□□□□ 0.54
NUP54-217ENST00000514987 SLC4A10Q6U841 1118 aa18.41■□□□□ 0.54
NUP54-217ENST00000514987 NCOA3Q9Y6Q9 1424 aa18.4■□□□□ 0.54
NUP54-217ENST00000514987 SLIT3O75094 1523 aa18.4■□□□□ 0.54
NUP54-217ENST00000514987 MED1Q15648 1581 aaPredicted RBP18.4■□□□□ 0.54
NUP54-217ENST00000514987 FKBP5Q13451 457 aaPredicted RBP18.39■□□□□ 0.53
NUP54-217ENST00000514987 GSPT1P15170 499 aaKnown RBP18.38■□□□□ 0.53
NUP54-217ENST00000514987 AMOTQ4VCS5 1084 aa18.38■□□□□ 0.53
NUP54-217ENST00000514987 CIZ1Q9ULV3 898 aaPredicted RBP18.38■□□□□ 0.53
NUP54-217ENST00000514987 LMO7Q8WWI1 1683 aa18.38■□□□□ 0.53
NUP54-217ENST00000514987 PLEKHO1Q53GL0 409 aaPredicted RBP18.38■□□□□ 0.53
NUP54-217ENST00000514987 OSBPL3Q9H4L5 887 aa18.38■□□□□ 0.53
NUP54-217ENST00000514987 OVOS2A0A0G2JMS6 1433 aa18.38■□□□□ 0.53
NUP54-217ENST00000514987 NCAPD2Q15021 1401 aa18.38■□□□□ 0.53
NUP54-217ENST00000514987 KIF1AQ12756 1690 aa18.38■□□□□ 0.53
NUP54-217ENST00000514987 F6X3S4 739 aa18.37■□□□□ 0.53
NUP54-217ENST00000514987 AKAP4Q5JQC9 854 aa18.36■□□□□ 0.53
NUP54-217ENST00000514987 KDM3BQ7LBC6 1761 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms