RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 PIP4K2AP48426 406 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-219ENST00000514096 MIS18AQ9NYP9 233 aa10.43□□□□□ -0.74
LIMCH1-219ENST00000514096 EDC4Q6P2E9 1401 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-219ENST00000514096 SLC39A6Q13433 755 aa10.43□□□□□ -0.74
LIMCH1-219ENST00000514096 NECTIN2Q92692 538 aa10.43□□□□□ -0.74
LIMCH1-219ENST00000514096 FGD1P98174 961 aa10.42□□□□□ -0.74
LIMCH1-219ENST00000514096 C1orf141Q5JVX7 400 aa10.42□□□□□ -0.74
LIMCH1-219ENST00000514096 DIAPH1O60610 1272 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-219ENST00000514096 NEFMP07197 916 aa10.42□□□□□ -0.74
LIMCH1-219ENST00000514096 THUMPD2Q9BTF0 503 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-219ENST00000514096 ZNF316A6NFI3 1004 aaPredicted RBP10.41□□□□□ -0.74
LIMCH1-219ENST00000514096 ERICH6BQ5W0A0 696 aa10.41□□□□□ -0.74
LIMCH1-219ENST00000514096 CARD10Q9BWT7 1032 aa10.41□□□□□ -0.74
LIMCH1-219ENST00000514096 CFAP53Q96M91 514 aa10.41□□□□□ -0.74
LIMCH1-219ENST00000514096 TFCP2L1Q9NZI6 479 aa10.41□□□□□ -0.74
LIMCH1-219ENST00000514096 USP19O94966 1318 aa10.4□□□□□ -0.74
LIMCH1-219ENST00000514096 FAM177BA6PVY3 158 aa10.4□□□□□ -0.74
LIMCH1-219ENST00000514096 CPSF1Q10570 1443 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-219ENST00000514096 PRKAR2BP31323 418 aa10.4□□□□□ -0.75
LIMCH1-219ENST00000514096 SMG6Q86US8 1419 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-219ENST00000514096 RBM19Q9Y4C8 960 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 SUPT16HQ9Y5B9 1047 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 CD163L1Q9NR16 1453 aa10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 CRB1P82279 1406 aa10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 NHSL1Q5SYE7 1610 aa10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 ELL2O00472 640 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 WDR43Q15061 677 aaKnown RBP eCLIP10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 NFATC2IPQ8NCF5 419 aa10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 AATKQ6ZMQ8 1374 aa10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 NPHP1O15259 732 aa10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 CABP4P57796 275 aa10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 MCM10Q7L590 875 aa10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 ASAP1Q9ULH1 1129 aa10.38□□□□□ -0.75
LIMCH1-219ENST00000514096 LGR6Q9HBX8 967 aa10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 TMOD3Q9NYL9 352 aa10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 SLIT2O94813 1529 aa10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 COL5A2P05997 1499 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 CYP27B1O15528 508 aa10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 NPM2Q86SE8 214 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 FLT4P35916 1363 aa10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 TCERG1O14776 1098 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 ANP32CO43423 234 aa10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 BICDL1Q6ZP65 573 aa10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 MRS2Q9HD23 443 aa10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 CCNL1Q9UK58 526 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 NUDCQ9Y266 331 aa10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 ATRNO75882 1429 aa10.37□□□□□ -0.75
LIMCH1-219ENST00000514096 PPP2R1AP30153 589 aa10.36□□□□□ -0.75
LIMCH1-219ENST00000514096 TXNRD1Q16881 649 aa10.36□□□□□ -0.75
LIMCH1-219ENST00000514096 CCDC184Q52MB2 194 aa10.36□□□□□ -0.75
LIMCH1-219ENST00000514096 NBPF14Q5TI25 921 aa10.36□□□□□ -0.75
LIMCH1-219ENST00000514096 KNDC1Q76NI1 1749 aa10.36□□□□□ -0.75
LIMCH1-219ENST00000514096 SPG7Q9UQ90 795 aa10.36□□□□□ -0.75
LIMCH1-219ENST00000514096 TEFQ10587 303 aa10.36□□□□□ -0.75
LIMCH1-219ENST00000514096 CCDC24Q8N4L8 307 aa10.36□□□□□ -0.75
LIMCH1-219ENST00000514096 PHACTR3Q96KR7 559 aa10.35□□□□□ -0.75
LIMCH1-219ENST00000514096 RTF1Q92541 710 aaKnown RBP10.35□□□□□ -0.75
LIMCH1-219ENST00000514096 PER1O15534 1290 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-219ENST00000514096 ATP6V1AP38606 617 aa10.34□□□□□ -0.75
LIMCH1-219ENST00000514096 PLEKHO1Q53GL0 409 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-219ENST00000514096 CHMP4AQ9BY43 222 aa10.34□□□□□ -0.75
LIMCH1-219ENST00000514096 MAPK8IP3Q9UPT6 1336 aa10.34□□□□□ -0.75
LIMCH1-219ENST00000514096 KIF1AQ12756 1690 aa10.34□□□□□ -0.75
LIMCH1-219ENST00000514096 CANXP27824 592 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-219ENST00000514096 NAP1L5Q96NT1 182 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-219ENST00000514096 TPRNQ4KMQ1 711 aa10.34□□□□□ -0.75
LIMCH1-219ENST00000514096 EIF2S2P20042 333 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-219ENST00000514096 TAF7LQ5H9L4 462 aa10.33□□□□□ -0.76
LIMCH1-219ENST00000514096 MTHFSDQ2M296 383 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-219ENST00000514096 BARGINQ6ZT62 677 aa10.33□□□□□ -0.76
LIMCH1-219ENST00000514096 IFNL2Q8IZJ0 200 aa10.33□□□□□ -0.76
LIMCH1-219ENST00000514096 STK32BQ9NY57 414 aa10.33□□□□□ -0.76
LIMCH1-219ENST00000514096 ZNF219Q9P2Y4 722 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-219ENST00000514096 PIGBQ92521 554 aa10.32□□□□□ -0.76
LIMCH1-219ENST00000514096 SHPRHQ149N8 1683 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 CPDO75976 1380 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 GNPATO15228 680 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 LRRC4BQ9NT99 713 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 THRAP3Q9Y2W1 955 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 KIAA1210Q9ULL0 1709 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 PIK3C2AO00443 1686 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 TTC5Q8N0Z6 440 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 AK7Q96M32 723 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 OVOS2A0A0J9YW53 1432 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 OVOS2Q6IE36 1432 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 ADGRB2O60241 1585 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 GLI3P10071 1580 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 ITSN1Q15811 1721 aa10.31□□□□□ -0.76
LIMCH1-219ENST00000514096 NINLQ9Y2I6 1382 aa10.3□□□□□ -0.76
LIMCH1-219ENST00000514096 AAMPQ13685 434 aa10.3□□□□□ -0.76
LIMCH1-219ENST00000514096 KCNQ3O43525 872 aa10.3□□□□□ -0.76
LIMCH1-219ENST00000514096 ANXA1P04083 346 aa10.3□□□□□ -0.76
LIMCH1-219ENST00000514096 PROM2Q8N271 834 aa10.3□□□□□ -0.76
LIMCH1-219ENST00000514096 RGPD5Q99666 1765 aa10.29□□□□□ -0.76
LIMCH1-219ENST00000514096 CDK12Q9NYV4 1490 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-219ENST00000514096 MEGF6O75095 1541 aa10.29□□□□□ -0.76
LIMCH1-219ENST00000514096 IL13P35225 146 aa10.29□□□□□ -0.76
LIMCH1-219ENST00000514096 PCDH11XQ9BZA7 1347 aa10.29□□□□□ -0.76
LIMCH1-219ENST00000514096 PCDH11YQ9BZA8 1340 aa10.29□□□□□ -0.76
LIMCH1-219ENST00000514096 PUS7Q96PZ0 661 aaKnown RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms