RNA–Protein interactions for RNA: ENST00000513816.1

RAPGEF2-212, Transcript of Rap guanine nucleotide exchange factor 2, humanhuman

TSL 1 (best)

Gene RAPGEF2, Length 3,670 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF2-212ENST00000513816 UPF1Q92900 1129 aaKnown RBP eCLIP9.58□□□□□ -0.88
RAPGEF2-212ENST00000513816 PKD1L3Q7Z443 1732 aa9.58□□□□□ -0.88
RAPGEF2-212ENST00000513816 PLEKHO1Q53GL0 409 aaPredicted RBP9.58□□□□□ -0.88
RAPGEF2-212ENST00000513816 NBPF6Q5VWK0 638 aa9.58□□□□□ -0.88
RAPGEF2-212ENST00000513816 NBPF4Q96M43 638 aa9.58□□□□□ -0.88
RAPGEF2-212ENST00000513816 KDRP35968 1356 aa9.57□□□□□ -0.88
RAPGEF2-212ENST00000513816 DDX10Q13206 875 aaKnown RBP9.57□□□□□ -0.88
RAPGEF2-212ENST00000513816 RGPD3A6NKT7 1758 aaPredicted RBP9.57□□□□□ -0.88
RAPGEF2-212ENST00000513816 RGPD4Q7Z3J3 1758 aa9.57□□□□□ -0.88
RAPGEF2-212ENST00000513816 PPP2R1AP30153 589 aa9.57□□□□□ -0.88
RAPGEF2-212ENST00000513816 EYA1Q99502 592 aa9.57□□□□□ -0.88
RAPGEF2-212ENST00000513816 MYBBP1AQ9BQG0 1328 aaKnown RBP9.56□□□□□ -0.88
RAPGEF2-212ENST00000513816 NEFMP07197 916 aa9.56□□□□□ -0.88
RAPGEF2-212ENST00000513816 IL13P35225 146 aa9.56□□□□□ -0.88
RAPGEF2-212ENST00000513816 COL3A1P02461 1466 aaPredicted RBP9.55□□□□□ -0.88
RAPGEF2-212ENST00000513816 RGPD2P0DJD1 1756 aa9.55□□□□□ -0.88
RAPGEF2-212ENST00000513816 MEGF6O75095 1541 aa9.55□□□□□ -0.88
RAPGEF2-212ENST00000513816 FBLN1P23142 703 aa9.55□□□□□ -0.88
RAPGEF2-212ENST00000513816 BCL11BQ9C0K0 894 aaPredicted RBP9.55□□□□□ -0.88
RAPGEF2-212ENST00000513816 NHSQ6T4R5 1651 aa9.55□□□□□ -0.88
RAPGEF2-212ENST00000513816 IFNL2Q8IZJ0 200 aa9.54□□□□□ -0.88
RAPGEF2-212ENST00000513816 NKX1-1Q15270 411 aaPredicted RBP9.53□□□□□ -0.88
RAPGEF2-212ENST00000513816 MARCH10Q8NA82 808 aaPredicted RBP9.53□□□□□ -0.88
RAPGEF2-212ENST00000513816 GAS2L2Q8NHY3 880 aa9.53□□□□□ -0.88
RAPGEF2-212ENST00000513816 TNS1Q9HBL0 1735 aaKnown RBP9.53□□□□□ -0.88
RAPGEF2-212ENST00000513816 PLSCR1O15162 318 aa9.52□□□□□ -0.88
RAPGEF2-212ENST00000513816 FCHSD2O94868 740 aa9.52□□□□□ -0.88
RAPGEF2-212ENST00000513816 C1orf141Q5JVX7 400 aa9.52□□□□□ -0.88
RAPGEF2-212ENST00000513816 SBF2Q86WG5 1849 aa9.52□□□□□ -0.88
RAPGEF2-212ENST00000513816 ANP32CO43423 234 aa9.52□□□□□ -0.89
RAPGEF2-212ENST00000513816 SULT6B1Q6IMI4 303 aa9.52□□□□□ -0.89
RAPGEF2-212ENST00000513816 SMARCC1Q92922 1105 aaPredicted RBP9.52□□□□□ -0.89
RAPGEF2-212ENST00000513816 SHANK3Q9BYB0 1731 aa9.51□□□□□ -0.89
RAPGEF2-212ENST00000513816 PRKRIP1Q9H875 184 aaPredicted RBP9.51□□□□□ -0.89
RAPGEF2-212ENST00000513816 USHBP1Q8N6Y0 703 aa9.51□□□□□ -0.89
RAPGEF2-212ENST00000513816 DDX54Q8TDD1 881 aaKnown RBP9.51□□□□□ -0.89
RAPGEF2-212ENST00000513816 DCAF5Q96JK2 942 aa9.51□□□□□ -0.89
RAPGEF2-212ENST00000513816 ERVV-2B6SEH9 535 aa9.5□□□□□ -0.89
RAPGEF2-212ENST00000513816 U2SURPO15042 1029 aaKnown RBP9.5□□□□□ -0.89
RAPGEF2-212ENST00000513816 AKAP4Q5JQC9 854 aa9.5□□□□□ -0.89
RAPGEF2-212ENST00000513816 ZNF530Q6P9A1 599 aaPredicted RBP9.5□□□□□ -0.89
RAPGEF2-212ENST00000513816 HTATSF1O43719 755 aaKnown RBP9.49□□□□□ -0.89
RAPGEF2-212ENST00000513816 APBA3O96018 575 aa9.49□□□□□ -0.89
RAPGEF2-212ENST00000513816 PHKG2P15735 406 aa9.49□□□□□ -0.89
RAPGEF2-212ENST00000513816 TRIM37O94972 964 aa9.49□□□□□ -0.89
RAPGEF2-212ENST00000513816 U2AF1L5P0DN76 240 aaPredicted RBP9.49□□□□□ -0.89
RAPGEF2-212ENST00000513816 U2AF1Q01081 240 aaKnown RBP eCLIP9.49□□□□□ -0.89
RAPGEF2-212ENST00000513816 SLC27A3Q5K4L6 730 aa9.49□□□□□ -0.89
RAPGEF2-212ENST00000513816 NBPF14Q5TI25 921 aa9.49□□□□□ -0.89
RAPGEF2-212ENST00000513816 DOT1LQ8TEK3 1739 aa9.48□□□□□ -0.89
RAPGEF2-212ENST00000513816 WDR43Q15061 677 aaKnown RBP eCLIP9.48□□□□□ -0.89
RAPGEF2-212ENST00000513816 PRKCSHP14314 528 aaPredicted RBP9.48□□□□□ -0.89
RAPGEF2-212ENST00000513816 RREB1Q92766 1687 aa9.48□□□□□ -0.89
RAPGEF2-212ENST00000513816 CYP27B1O15528 508 aa9.47□□□□□ -0.89
RAPGEF2-212ENST00000513816 LMOD3Q0VAK6 560 aa9.47□□□□□ -0.89
RAPGEF2-212ENST00000513816 MAPK8IP3Q9UPT6 1336 aa9.47□□□□□ -0.89
RAPGEF2-212ENST00000513816 RSPH6AQ9H0K4 717 aa9.46□□□□□ -0.89
RAPGEF2-212ENST00000513816 TMOD3Q9NYL9 352 aa9.46□□□□□ -0.89
RAPGEF2-212ENST00000513816 CAMKK2Q96RR4 588 aa9.46□□□□□ -0.89
RAPGEF2-212ENST00000513816 BTAF1O14981 1849 aa9.46□□□□□ -0.9
RAPGEF2-212ENST00000513816 MAP3K5Q99683 1374 aa9.46□□□□□ -0.9
RAPGEF2-212ENST00000513816 CNGB1Q14028 1251 aaPredicted RBP9.46□□□□□ -0.9
RAPGEF2-212ENST00000513816 ADAMTS7Q9UKP4 1686 aa9.45□□□□□ -0.9
RAPGEF2-212ENST00000513816 AEBP1Q8IUX7 1158 aa9.45□□□□□ -0.9
RAPGEF2-212ENST00000513816 MRC1P22897 1456 aa9.45□□□□□ -0.9
RAPGEF2-212ENST00000513816 ZNF831Q5JPB2 1677 aa9.45□□□□□ -0.9
RAPGEF2-212ENST00000513816 HMOX1P09601 288 aa9.45□□□□□ -0.9
RAPGEF2-212ENST00000513816 NCBP3Q53F19 620 aaKnown RBP9.45□□□□□ -0.9
RAPGEF2-212ENST00000513816 SCN11AQ9UI33 1791 aa9.45□□□□□ -0.9
RAPGEF2-212ENST00000513816 GNAT3A8MTJ3 354 aa9.45□□□□□ -0.9
RAPGEF2-212ENST00000513816 PRKAR2BP31323 418 aa9.45□□□□□ -0.9
RAPGEF2-212ENST00000513816 RTF1Q92541 710 aaKnown RBP9.45□□□□□ -0.9
RAPGEF2-212ENST00000513816 ZBTB22O15209 634 aa9.44□□□□□ -0.9
RAPGEF2-212ENST00000513816 PRIM1P49642 420 aaKnown RBP9.44□□□□□ -0.9
RAPGEF2-212ENST00000513816 CABP4P57796 275 aa9.44□□□□□ -0.9
RAPGEF2-212ENST00000513816 NGEFQ8N5V2 710 aa9.44□□□□□ -0.9
RAPGEF2-212ENST00000513816 FAM182BQ5T319 152 aa9.44□□□□□ -0.9
RAPGEF2-212ENST00000513816 PNISRQ8TF01 805 aaKnown RBP9.44□□□□□ -0.9
RAPGEF2-212ENST00000513816 ITGB4P16144 1822 aa9.44□□□□□ -0.9
RAPGEF2-212ENST00000513816 LY75O60449 1722 aa9.43□□□□□ -0.9
RAPGEF2-212ENST00000513816 SYTL4Q96C24 671 aaPredicted RBP9.43□□□□□ -0.9
RAPGEF2-212ENST00000513816 ACSBG1Q96GR2 724 aa9.43□□□□□ -0.9
RAPGEF2-212ENST00000513816 STK32BQ9NY57 414 aa9.43□□□□□ -0.9
RAPGEF2-212ENST00000513816 NUP188Q5SRE5 1749 aa9.43□□□□□ -0.9
RAPGEF2-212ENST00000513816 RNMTO43148 476 aaKnown RBP9.43□□□□□ -0.9
RAPGEF2-212ENST00000513816 EN1Q05925 392 aaPredicted RBP9.43□□□□□ -0.9
RAPGEF2-212ENST00000513816 TXNRD1Q16881 649 aa9.43□□□□□ -0.9
RAPGEF2-212ENST00000513816 RUNDC1Q96C34 613 aa9.43□□□□□ -0.9
RAPGEF2-212ENST00000513816 TOGARAM1Q9Y4F4 1720 aa9.42□□□□□ -0.9
RAPGEF2-212ENST00000513816 TEFQ10587 303 aa9.42□□□□□ -0.9
RAPGEF2-212ENST00000513816 MTHFSDQ2M296 383 aaKnown RBP9.42□□□□□ -0.9
RAPGEF2-212ENST00000513816 FLAD1Q8NFF5 587 aa9.42□□□□□ -0.9
RAPGEF2-212ENST00000513816 BABAM1Q9NWV8 329 aa9.42□□□□□ -0.9
RAPGEF2-212ENST00000513816 CICQ96RK0 1608 aaPredicted RBP9.42□□□□□ -0.9
RAPGEF2-212ENST00000513816 CALD1Q05682 793 aaKnown RBP9.42□□□□□ -0.9
RAPGEF2-212ENST00000513816 NFE2L2Q16236 605 aa9.42□□□□□ -0.9
RAPGEF2-212ENST00000513816 PALLDQ8WX93 1383 aa9.42□□□□□ -0.9
RAPGEF2-212ENST00000513816 KAT6BQ8WYB5 2073 aa9.42□□□□□ -0.9
RAPGEF2-212ENST00000513816 DEFB132Q7Z7B7 95 aa9.42□□□□□ -0.9
RAPGEF2-212ENST00000513816 SLC52A2Q9HAB3 445 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms