RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 PPM1GO15355 546 aaPredicted RBP13.27□□□□□ -0.29
RNF4-221ENST00000513643 KCNQ2O43526 872 aa13.27□□□□□ -0.29
RNF4-221ENST00000513643 IGSF1Q8N6C5 1336 aa13.27□□□□□ -0.29
RNF4-221ENST00000513643 PLEKHG2Q9H7P9 1386 aa13.27□□□□□ -0.29
RNF4-221ENST00000513643 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.26□□□□□ -0.295e-8■□□□□ 9.7
RNF4-221ENST00000513643 IL13P35225 146 aa13.25□□□□□ -0.29
RNF4-221ENST00000513643 RAPGEF4Q8WZA2 1011 aa13.25□□□□□ -0.29
RNF4-221ENST00000513643 CYP27B1O15528 508 aa13.24□□□□□ -0.29
RNF4-221ENST00000513643 TATP17735 454 aaPredicted RBP13.24□□□□□ -0.29
RNF4-221ENST00000513643 NKX1-1Q15270 411 aaPredicted RBP13.24□□□□□ -0.29
RNF4-221ENST00000513643 DDX54Q8TDD1 881 aaKnown RBP13.24□□□□□ -0.29
RNF4-221ENST00000513643 SHANK3Q9BYB0 1731 aa13.23□□□□□ -0.29
RNF4-221ENST00000513643 MTHFSP49914 203 aa13.23□□□□□ -0.29
RNF4-221ENST00000513643 CC2D1BQ5T0F9 858 aaKnown RBP13.23□□□□□ -0.29
RNF4-221ENST00000513643 KDRP35968 1356 aa13.22□□□□□ -0.29
RNF4-221ENST00000513643 RGPD3A6NKT7 1758 aaPredicted RBP13.22□□□□□ -0.29
RNF4-221ENST00000513643 RGPD4Q7Z3J3 1758 aa13.22□□□□□ -0.29
RNF4-221ENST00000513643 ACSBG1Q96GR2 724 aa13.21□□□□□ -0.29
RNF4-221ENST00000513643 NHSQ6T4R5 1651 aa13.21□□□□□ -0.3
RNF4-221ENST00000513643 RREB1Q92766 1687 aa13.21□□□□□ -0.3
RNF4-221ENST00000513643 PCDH11XQ9BZA7 1347 aa13.2□□□□□ -0.3
RNF4-221ENST00000513643 PCDH11YQ9BZA8 1340 aa13.2□□□□□ -0.3
RNF4-221ENST00000513643 PKD1L3Q7Z443 1732 aa13.19□□□□□ -0.3
RNF4-221ENST00000513643 COL3A1P02461 1466 aaPredicted RBP13.19□□□□□ -0.3
RNF4-221ENST00000513643 PRIM1P49642 420 aaKnown RBP13.19□□□□□ -0.3
RNF4-221ENST00000513643 TXNRD1Q16881 649 aa13.19□□□□□ -0.3
RNF4-221ENST00000513643 AEBP1Q8IUX7 1158 aa13.18□□□□□ -0.3
RNF4-221ENST00000513643 SPG7Q9UQ90 795 aa13.18□□□□□ -0.3
RNF4-221ENST00000513643 PHKG2P15735 406 aa13.17□□□□□ -0.3
RNF4-221ENST00000513643 ZEB1P37275 1124 aaPredicted RBP13.17□□□□□ -0.3
RNF4-221ENST00000513643 NUP188Q5SRE5 1749 aa13.16□□□□□ -0.3
RNF4-221ENST00000513643 PPP2R1AP30153 589 aa13.16□□□□□ -0.3
RNF4-221ENST00000513643 ANO8Q9HCE9 1232 aaPredicted RBP13.16□□□□□ -0.3
RNF4-221ENST00000513643 LRRC4BQ9NT99 713 aa13.16□□□□□ -0.3
RNF4-221ENST00000513643 DIAPH1O60610 1272 aaKnown RBP13.15□□□□□ -0.3
RNF4-221ENST00000513643 R3HDM1Q15032 1099 aaKnown RBP13.15□□□□□ -0.3
RNF4-221ENST00000513643 AMOTQ4VCS5 1084 aa13.15□□□□□ -0.3
RNF4-221ENST00000513643 NBPF14Q5TI25 921 aa13.15□□□□□ -0.3
RNF4-221ENST00000513643 SULT6B1Q6IMI4 303 aa13.15□□□□□ -0.3
RNF4-221ENST00000513643 IFNL2Q8IZJ0 200 aa13.15□□□□□ -0.3
RNF4-221ENST00000513643 BTAF1O14981 1849 aa13.14□□□□□ -0.31
RNF4-221ENST00000513643 PSDA5PKW4 1024 aaPredicted RBP13.14□□□□□ -0.31
RNF4-221ENST00000513643 PLEKHO1Q53GL0 409 aaPredicted RBP13.14□□□□□ -0.31
RNF4-221ENST00000513643 SLC27A3Q5K4L6 730 aa13.14□□□□□ -0.31
RNF4-221ENST00000513643 PIGBQ92521 554 aa13.13□□□□□ -0.31
RNF4-221ENST00000513643 PAPPAQ13219 1627 aa13.12□□□□□ -0.31
RNF4-221ENST00000513643 KAT6BQ8WYB5 2073 aa13.11□□□□□ -0.31
RNF4-221ENST00000513643 DOT1LQ8TEK3 1739 aa13.11□□□□□ -0.31
RNF4-221ENST00000513643 TOGARAM1Q9Y4F4 1720 aa13.11□□□□□ -0.31
RNF4-221ENST00000513643 ERVV-2B6SEH9 535 aa13.11□□□□□ -0.31
RNF4-221ENST00000513643 SLC15A2Q16348 729 aa13.11□□□□□ -0.31
RNF4-221ENST00000513643 AKT1S1Q96B36 256 aa13.11□□□□□ -0.31
RNF4-221ENST00000513643 SYTL4Q96C24 671 aaPredicted RBP13.11□□□□□ -0.31
RNF4-221ENST00000513643 DCAF5Q96JK2 942 aa13.11□□□□□ -0.31
RNF4-221ENST00000513643 HSP90AB1P08238 724 aaKnown RBP13.1□□□□□ -0.31
RNF4-221ENST00000513643 MPRIPQ6WCQ1 1025 aa13.1□□□□□ -0.31
RNF4-221ENST00000513643 KDM6AO15550 1401 aaPredicted RBP13.1□□□□□ -0.31
RNF4-221ENST00000513643 HMOX1P09601 288 aa13.09□□□□□ -0.31
RNF4-221ENST00000513643 DDX10Q13206 875 aaKnown RBP13.09□□□□□ -0.31
RNF4-221ENST00000513643 ZNF827Q17R98 1081 aa13.09□□□□□ -0.31
RNF4-221ENST00000513643 ZNF530Q6P9A1 599 aaPredicted RBP13.09□□□□□ -0.31
RNF4-221ENST00000513643 LY75O60449 1722 aa13.08□□□□□ -0.32
RNF4-221ENST00000513643 CNGB1Q14028 1251 aaPredicted RBP13.08□□□□□ -0.32
RNF4-221ENST00000513643 MTHFSDQ2M296 383 aaKnown RBP13.08□□□□□ -0.32
RNF4-221ENST00000513643 AKAP4Q5JQC9 854 aa13.08□□□□□ -0.32
RNF4-221ENST00000513643 SMARCC1Q92922 1105 aaPredicted RBP13.08□□□□□ -0.32
RNF4-221ENST00000513643 PDGFDQ9GZP0 370 aaPredicted RBP13.08□□□□□ -0.32
RNF4-221ENST00000513643 ATG3Q9NT62 314 aa13.08□□□□□ -0.32
RNF4-221ENST00000513643 PALLDQ8WX93 1383 aa13.07□□□□□ -0.32
RNF4-221ENST00000513643 RALBP1Q15311 655 aa13.07□□□□□ -0.32
RNF4-221ENST00000513643 CFAP53Q96M91 514 aa13.07□□□□□ -0.32
RNF4-221ENST00000513643 RSPH6AQ9H0K4 717 aa13.07□□□□□ -0.32
RNF4-221ENST00000513643 STK32BQ9NY57 414 aa13.07□□□□□ -0.32
RNF4-221ENST00000513643 ITGB4P16144 1822 aa13.06□□□□□ -0.32
RNF4-221ENST00000513643 LRP5O75197 1615 aa13.06□□□□□ -0.32
RNF4-221ENST00000513643 KCNQ4P56696 695 aa13.06□□□□□ -0.32
RNF4-221ENST00000513643 TMOD3Q9NYL9 352 aa13.06□□□□□ -0.32
RNF4-221ENST00000513643 CCNL1Q9UK58 526 aaPredicted RBP13.06□□□□□ -0.32
RNF4-221ENST00000513643 ASAP1Q9ULH1 1129 aa13.06□□□□□ -0.32
RNF4-221ENST00000513643 CASZ1Q86V15 1759 aa13.05□□□□□ -0.32
RNF4-221ENST00000513643 FCHSD2O94868 740 aa13.05□□□□□ -0.32
RNF4-221ENST00000513643 PHACTR3Q96KR7 559 aa13.05□□□□□ -0.32
RNF4-221ENST00000513643 SLC4A9Q96Q91 983 aa13.05□□□□□ -0.32
RNF4-221ENST00000513643 U2SURPO15042 1029 aaKnown RBP13.04□□□□□ -0.32
RNF4-221ENST00000513643 C1orf141Q5JVX7 400 aa13.04□□□□□ -0.32
RNF4-221ENST00000513643 SGIP1Q9BQI5 828 aa13.04□□□□□ -0.32
RNF4-221ENST00000513643 LGR6Q9HBX8 967 aa13.04□□□□□ -0.32
RNF4-221ENST00000513643 NUDCQ9Y266 331 aa13.04□□□□□ -0.32
RNF4-221ENST00000513643 ADAMTS7Q9UKP4 1686 aa13.04□□□□□ -0.32
RNF4-221ENST00000513643 LOC102724428A0A0B4J2F2 783 aa13.03□□□□□ -0.32
RNF4-221ENST00000513643 RNMTO43148 476 aaKnown RBP13.03□□□□□ -0.32
RNF4-221ENST00000513643 HMGB2P26583 209 aaKnown RBP13.03□□□□□ -0.32
RNF4-221ENST00000513643 PTGER2P43116 358 aa13.03□□□□□ -0.32
RNF4-221ENST00000513643 SIK1P57059 783 aa13.03□□□□□ -0.32
RNF4-221ENST00000513643 NFATC2IPQ8NCF5 419 aa13.03□□□□□ -0.32
RNF4-221ENST00000513643 PNPLA7Q6ZV29 1317 aa13.03□□□□□ -0.32
RNF4-221ENST00000513643 MRC1P22897 1456 aa13.03□□□□□ -0.32
RNF4-221ENST00000513643 PRKAR2BP31323 418 aa13.02□□□□□ -0.33
RNF4-221ENST00000513643 CABP4P57796 275 aa13.02□□□□□ -0.33
RNF4-221ENST00000513643 ITPK1Q13572 414 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms