RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 NUP62CLQ9H1M0 184 aa13.35□□□□□ -0.27
TCOF1-211ENST00000513346 PRDM11Q9NQV5 511 aa13.35□□□□□ -0.27
TCOF1-211ENST00000513346 CCDC61Q9Y6R9 512 aa13.35□□□□□ -0.27
TCOF1-211ENST00000513346 CCDC30Q5VVM6 783 aa13.35□□□□□ -0.27
TCOF1-211ENST00000513346 ERCC4Q92889 916 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-211ENST00000513346 KIF2AO00139 706 aaPredicted RBP13.35□□□□□ -0.27
TCOF1-211ENST00000513346 PSMA5P28066 241 aa13.35□□□□□ -0.27
TCOF1-211ENST00000513346 TIGD1Q96MW7 591 aa13.35□□□□□ -0.27
TCOF1-211ENST00000513346 NOL7Q9UMY1 257 aaKnown RBP13.35□□□□□ -0.27
TCOF1-211ENST00000513346 SMC2O95347 1197 aa13.34□□□□□ -0.27
TCOF1-211ENST00000513346 PTPN14Q15678 1187 aa13.34□□□□□ -0.27
TCOF1-211ENST00000513346 TNNT1P13805 278 aa13.34□□□□□ -0.27
TCOF1-211ENST00000513346 TATP17735 454 aaPredicted RBP13.34□□□□□ -0.27
TCOF1-211ENST00000513346 SSH1Q8WYL5 1049 aa13.34□□□□□ -0.27
TCOF1-211ENST00000513346 CADPS2Q86UW7 1296 aa13.34□□□□□ -0.27
TCOF1-211ENST00000513346 NUDT16Q96DE0 195 aaKnown RBP13.34□□□□□ -0.27
TCOF1-211ENST00000513346 KIAA0556O60303 1618 aa13.34□□□□□ -0.27
TCOF1-211ENST00000513346 MAP3K11Q16584 847 aa13.33□□□□□ -0.27
TCOF1-211ENST00000513346 TBC1D9Q6ZT07 1266 aa13.33□□□□□ -0.27
TCOF1-211ENST00000513346 CNTROBQ8N137 903 aa13.33□□□□□ -0.27
TCOF1-211ENST00000513346 NOL10Q9BSC4 688 aaKnown RBP13.33□□□□□ -0.27
TCOF1-211ENST00000513346 TCOF1Q13428 1488 aaKnown RBP13.33□□□□□ -0.28
TCOF1-211ENST00000513346 NOS1P29475 1434 aa13.33□□□□□ -0.28
TCOF1-211ENST00000513346 KIF20AO95235 890 aa13.33□□□□□ -0.28
TCOF1-211ENST00000513346 PARD3Q8TEW0 1356 aa13.33□□□□□ -0.28
TCOF1-211ENST00000513346 ABCC10Q5T3U5 1492 aa13.33□□□□□ -0.28
TCOF1-211ENST00000513346 PRIM1P49642 420 aaKnown RBP13.33□□□□□ -0.28
TCOF1-211ENST00000513346 CPLX2Q6PUV4 134 aaKnown RBP13.33□□□□□ -0.28
TCOF1-211ENST00000513346 UBXN4Q92575 508 aa13.33□□□□□ -0.28
TCOF1-211ENST00000513346 RBM25P49756 843 aaKnown RBP13.32□□□□□ -0.28
TCOF1-211ENST00000513346 TMCO3Q6UWJ1 677 aa13.32□□□□□ -0.28
TCOF1-211ENST00000513346 SYNE3Q6ZMZ3 975 aa13.32□□□□□ -0.28
TCOF1-211ENST00000513346 GNAI3P08754 354 aa13.32□□□□□ -0.28
TCOF1-211ENST00000513346 TMPOP42166 694 aaKnown RBP13.32□□□□□ -0.28
TCOF1-211ENST00000513346 HDAC1Q13547 482 aaPredicted RBP13.32□□□□□ -0.28
TCOF1-211ENST00000513346 CFAP43Q8NDM7 1665 aa13.32□□□□□ -0.28
TCOF1-211ENST00000513346 SCAF11Q99590 1463 aaKnown RBP13.32□□□□□ -0.28
TCOF1-211ENST00000513346 AKAP17AQ02040 695 aaKnown RBP13.32□□□□□ -0.28
TCOF1-211ENST00000513346 KIF18AQ8NI77 898 aa13.32□□□□□ -0.28
TCOF1-211ENST00000513346 NEUROD6Q96NK8 337 aa13.32□□□□□ -0.28
TCOF1-211ENST00000513346 FILIP1Q7Z7B0 1213 aa13.32□□□□□ -0.28
TCOF1-211ENST00000513346 DEF6Q9H4E7 631 aa13.32□□□□□ -0.28
TCOF1-211ENST00000513346 HOOK1Q9UJC3 728 aaKnown RBP13.32□□□□□ -0.28
TCOF1-211ENST00000513346 H0YHG0 523 aa13.31□□□□□ -0.28
TCOF1-211ENST00000513346 RPAP2Q8IXW5 612 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-211ENST00000513346 C16orf45Q96MC5 204 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-211ENST00000513346 SYCP2Q9BX26 1530 aa13.31□□□□□ -0.28
TCOF1-211ENST00000513346 FAM135AQ9P2D6 1515 aa13.31□□□□□ -0.28
TCOF1-211ENST00000513346 MARCH6O60337 910 aa13.31□□□□□ -0.28
TCOF1-211ENST00000513346 FCHSD2O94868 740 aa13.31□□□□□ -0.28
TCOF1-211ENST00000513346 ZNF530Q6P9A1 599 aaPredicted RBP13.31□□□□□ -0.28
TCOF1-211ENST00000513346 AMOTL2Q9Y2J4 779 aa13.31□□□□□ -0.28
TCOF1-211ENST00000513346 A2MP01023 1474 aa13.31□□□□□ -0.28
TCOF1-211ENST00000513346 TRIM27P14373 513 aa13.31□□□□□ -0.28
TCOF1-211ENST00000513346 TOM1L2Q6ZVM7 507 aa13.31□□□□□ -0.28
TCOF1-211ENST00000513346 LARP1BQ659C4 914 aaKnown RBP13.3□□□□□ -0.28
TCOF1-211ENST00000513346 AMOTL1Q8IY63 956 aa13.3□□□□□ -0.28
TCOF1-211ENST00000513346 C14orf93Q9H972 538 aaKnown RBP13.3□□□□□ -0.28
TCOF1-211ENST00000513346 IPO7O95373 1038 aaKnown RBP13.3□□□□□ -0.28
TCOF1-211ENST00000513346 PDIA4P13667 645 aaKnown RBP13.3□□□□□ -0.28
TCOF1-211ENST00000513346 KRT222Q8N1A0 295 aa13.3□□□□□ -0.28
TCOF1-211ENST00000513346 PDILTQ8N807 584 aa13.3□□□□□ -0.28
TCOF1-211ENST00000513346 TRERF1Q96PN7 1200 aa13.3□□□□□ -0.28
TCOF1-211ENST00000513346 RBM42Q9BTD8 480 aaKnown RBP13.3□□□□□ -0.28
TCOF1-211ENST00000513346 PLEKHH1Q9ULM0 1364 aa13.3□□□□□ -0.28
TCOF1-211ENST00000513346 PES1O00541 588 aaKnown RBP13.3□□□□□ -0.28
TCOF1-211ENST00000513346 ZNF830Q96NB3 372 aaPredicted RBP13.3□□□□□ -0.28
TCOF1-211ENST00000513346 FMNL2Q96PY5 1086 aa13.3□□□□□ -0.28
TCOF1-211ENST00000513346 THUMPD2Q9BTF0 503 aaKnown RBP13.3□□□□□ -0.28
TCOF1-211ENST00000513346 FOXO3O43524 673 aa13.3□□□□□ -0.28
TCOF1-211ENST00000513346 CALRP27797 417 aaKnown RBP13.3□□□□□ -0.28
TCOF1-211ENST00000513346 HDGFL1Q5TGJ6 251 aa13.3□□□□□ -0.28
TCOF1-211ENST00000513346 CYP46A1Q9Y6A2 500 aa13.3□□□□□ -0.28
TCOF1-211ENST00000513346 ADAMTS2O95450 1211 aa13.29□□□□□ -0.28
TCOF1-211ENST00000513346 RDXP35241 583 aaKnown RBP13.29□□□□□ -0.28
TCOF1-211ENST00000513346 PAXBP1Q9Y5B6 917 aa13.29□□□□□ -0.28
TCOF1-211ENST00000513346 EIF3JO75822 258 aaKnown RBP13.29□□□□□ -0.28
TCOF1-211ENST00000513346 SLC4A2P04920 1241 aa13.29□□□□□ -0.28
TCOF1-211ENST00000513346 OLFM4Q6UX06 510 aa13.29□□□□□ -0.28
TCOF1-211ENST00000513346 RUFY1Q96T51 708 aa13.29□□□□□ -0.28
TCOF1-211ENST00000513346 DNAJC2Q99543 621 aaKnown RBP13.29□□□□□ -0.28
TCOF1-211ENST00000513346 TRDNQ13061 729 aa13.29□□□□□ -0.28
TCOF1-211ENST00000513346 TRAPPC8Q9Y2L5 1435 aa13.29□□□□□ -0.28
TCOF1-211ENST00000513346 KDM5BQ9UGL1 1544 aa13.29□□□□□ -0.28
TCOF1-211ENST00000513346 CPLX1O14810 134 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 SURF6O75683 361 aaKnown RBP13.28□□□□□ -0.28
TCOF1-211ENST00000513346 ALDH1L2Q3SY69 923 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 KCNH5Q8NCM2 988 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 ZSCAN31Q96LW9 406 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-211ENST00000513346 UBAP1LF5GYI3 381 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 GNAI2P04899 355 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 FOSBP53539 338 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 VPS53Q5VIR6 699 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 KLHL34Q8N239 644 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 SPATA32Q96LK8 384 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 LRRCC1Q9C099 1032 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 CLASRPQ8N2M8 674 aaKnown RBP13.28□□□□□ -0.28
TCOF1-211ENST00000513346 ANKRD20A12PQ8NF67 263 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 ERLIN1O75477 346 aa13.28□□□□□ -0.28
TCOF1-211ENST00000513346 ZC3H6P61129 1189 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms