RNA–Protein interactions for RNA: ENST00000512332.5

CPNE4-210, Transcript of copine 4, humanhuman

TSL 1 (best) BASIC

Gene CPNE4, Length 2,230 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-210ENST00000512332 ANKRD44Q8N8A2 993 aa11.54□□□□□ -0.56
CPNE4-210ENST00000512332 CHMP5Q9NZZ3 219 aa11.54□□□□□ -0.56
CPNE4-210ENST00000512332 RIMS1Q86UR5 1692 aaKnown RBP11.53□□□□□ -0.56
CPNE4-210ENST00000512332 NCOA3Q9Y6Q9 1424 aa11.53□□□□□ -0.56
CPNE4-210ENST00000512332 MCM10Q7L590 875 aa11.53□□□□□ -0.56
CPNE4-210ENST00000512332 HSCBQ8IWL3 235 aa11.53□□□□□ -0.56
CPNE4-210ENST00000512332 IGSF1Q8N6C5 1336 aa11.52□□□□□ -0.56
CPNE4-210ENST00000512332 CEBPAP49715 358 aaPredicted RBP11.52□□□□□ -0.56
CPNE4-210ENST00000512332 GAS2L2Q8NHY3 880 aa11.52□□□□□ -0.57
CPNE4-210ENST00000512332 ATP10DQ9P241 1426 aa11.52□□□□□ -0.57
CPNE4-210ENST00000512332 NUTM2FA1L443 756 aa11.51□□□□□ -0.57
CPNE4-210ENST00000512332 DDIT3P35638 169 aa11.51□□□□□ -0.57
CPNE4-210ENST00000512332 NGDNQ8NEJ9 315 aaKnown RBP11.51□□□□□ -0.57
CPNE4-210ENST00000512332 XRN1Q8IZH2 1706 aaKnown RBP11.51□□□□□ -0.57
CPNE4-210ENST00000512332 FMN2Q9NZ56 1722 aa11.51□□□□□ -0.57
CPNE4-210ENST00000512332 MTHFSDQ2M296 383 aaKnown RBP11.51□□□□□ -0.57
CPNE4-210ENST00000512332 TBC1D9Q6ZT07 1266 aa11.51□□□□□ -0.57
CPNE4-210ENST00000512332 PLEKHM2Q8IWE5 1019 aa11.51□□□□□ -0.57
CPNE4-210ENST00000512332 RTF1Q92541 710 aaKnown RBP11.51□□□□□ -0.57
CPNE4-210ENST00000512332 SOS1Q07889 1333 aaPredicted RBP11.5□□□□□ -0.57
CPNE4-210ENST00000512332 CDC45O75419 566 aa11.5□□□□□ -0.57
CPNE4-210ENST00000512332 KIF2CQ99661 725 aa11.5□□□□□ -0.57
CPNE4-210ENST00000512332 RTL1A6NKG5 1358 aa11.5□□□□□ -0.57
CPNE4-210ENST00000512332 USP54Q70EL1 1684 aa11.5□□□□□ -0.57
CPNE4-210ENST00000512332 MCM4P33991 863 aa11.5□□□□□ -0.57
CPNE4-210ENST00000512332 KRT24Q2M2I5 525 aa11.5□□□□□ -0.57
CPNE4-210ENST00000512332 CEP85Q6P2H3 762 aa11.5□□□□□ -0.57
CPNE4-210ENST00000512332 EYA1Q99502 592 aa11.5□□□□□ -0.57
CPNE4-210ENST00000512332 BABAM1Q9NWV8 329 aa11.5□□□□□ -0.57
CPNE4-210ENST00000512332 CIZ1Q9ULV3 898 aaPredicted RBP11.5□□□□□ -0.57
CPNE4-210ENST00000512332 AMPHP49418 695 aa11.49□□□□□ -0.57
CPNE4-210ENST00000512332 PIK3C2AO00443 1686 aa11.49□□□□□ -0.57
CPNE4-210ENST00000512332 SLC4A2P04920 1241 aa11.48□□□□□ -0.57
CPNE4-210ENST00000512332 CCT4P50991 539 aaKnown RBP11.48□□□□□ -0.57
CPNE4-210ENST00000512332 TTC22Q5TAA0 569 aa11.48□□□□□ -0.57
CPNE4-210ENST00000512332 TSPYL4Q9UJ04 414 aa11.48□□□□□ -0.57
CPNE4-210ENST00000512332 GSPT1P15170 499 aaKnown RBP11.47□□□□□ -0.57
CPNE4-210ENST00000512332 FER1L4A9Z1Z3 1794 aa11.47□□□□□ -0.57
CPNE4-210ENST00000512332 RGPD8O14715 1765 aaPredicted RBP11.47□□□□□ -0.57
CPNE4-210ENST00000512332 MSH6P52701 1360 aa11.47□□□□□ -0.57
CPNE4-210ENST00000512332 FOXO3O43524 673 aa11.47□□□□□ -0.57
CPNE4-210ENST00000512332 HMMRO75330 724 aa11.47□□□□□ -0.57
CPNE4-210ENST00000512332 CEP170BQ9Y4F5 1589 aaPredicted RBP11.46□□□□□ -0.57
CPNE4-210ENST00000512332 NLRP6P59044 892 aa11.46□□□□□ -0.57
CPNE4-210ENST00000512332 LRRC37A3O60309 1634 aa11.46□□□□□ -0.57
CPNE4-210ENST00000512332 GNAT3A8MTJ3 354 aa11.45□□□□□ -0.58
CPNE4-210ENST00000512332 HOXC9P31274 260 aa11.45□□□□□ -0.58
CPNE4-210ENST00000512332 MEIS3Q99687 375 aa11.45□□□□□ -0.58
CPNE4-210ENST00000512332 DDX11L8A8MPP1 907 aa11.45□□□□□ -0.58
CPNE4-210ENST00000512332 SOX12O15370 315 aa11.45□□□□□ -0.58
CPNE4-210ENST00000512332 L1TD1Q5T7N2 865 aaKnown RBP11.45□□□□□ -0.58
CPNE4-210ENST00000512332 SPRYD3Q8NCJ5 442 aa11.45□□□□□ -0.58
CPNE4-210ENST00000512332 IL27Q8NEV9 243 aa11.45□□□□□ -0.58
CPNE4-210ENST00000512332 OSBPL3Q9H4L5 887 aa11.45□□□□□ -0.58
CPNE4-210ENST00000512332 NWD1Q149M9 1564 aa11.45□□□□□ -0.58
CPNE4-210ENST00000512332 KCNA6P17658 529 aa11.44□□□□□ -0.58
CPNE4-210ENST00000512332 CCDC30Q5VVM6 783 aa11.44□□□□□ -0.58
CPNE4-210ENST00000512332 STK31Q9BXU1 1019 aa11.44□□□□□ -0.58
CPNE4-210ENST00000512332 MIS18AQ9NYP9 233 aa11.44□□□□□ -0.58
CPNE4-210ENST00000512332 MARF1Q9Y4F3 1742 aaKnown RBP11.44□□□□□ -0.58
CPNE4-210ENST00000512332 CACNA1FO60840 1977 aa11.44□□□□□ -0.58
CPNE4-210ENST00000512332 K7ELQ4 463 aaPredicted RBP11.44□□□□□ -0.58
CPNE4-210ENST00000512332 HSP90AB1P08238 724 aaKnown RBP11.43□□□□□ -0.58
CPNE4-210ENST00000512332 RABEP1Q15276 862 aa11.43□□□□□ -0.58
CPNE4-210ENST00000512332 PLPPR3Q6T4P5 718 aa11.43□□□□□ -0.58
CPNE4-210ENST00000512332 BRPF3Q9ULD4 1205 aa11.43□□□□□ -0.58
CPNE4-210ENST00000512332 CASC1Q6TDU7 716 aa11.43□□□□□ -0.58
CPNE4-210ENST00000512332 G2E3Q7L622 706 aa11.43□□□□□ -0.58
CPNE4-210ENST00000512332 C16orf71Q8IYS4 520 aaPredicted RBP11.43□□□□□ -0.58
CPNE4-210ENST00000512332 USP26Q9BXU7 913 aa11.43□□□□□ -0.58
CPNE4-210ENST00000512332 MAP3K5Q99683 1374 aa11.42□□□□□ -0.58
CPNE4-210ENST00000512332 GNAI2P04899 355 aa11.42□□□□□ -0.58
CPNE4-210ENST00000512332 GNAI3P08754 354 aa11.42□□□□□ -0.58
CPNE4-210ENST00000512332 PTMSP20962 102 aa11.42□□□□□ -0.58
CPNE4-210ENST00000512332 RAB3GAP1Q15042 981 aa11.42□□□□□ -0.58
CPNE4-210ENST00000512332 TAF7Q15545 349 aaPredicted RBP11.42□□□□□ -0.58
CPNE4-210ENST00000512332 ABTB2Q8N961 1025 aa11.42□□□□□ -0.58
CPNE4-210ENST00000512332 FSD2A1L4K1 749 aa11.41□□□□□ -0.58
CPNE4-210ENST00000512332 TRAK2O60296 914 aa11.41□□□□□ -0.58
CPNE4-210ENST00000512332 SDSP20132 328 aa11.41□□□□□ -0.58
CPNE4-210ENST00000512332 IL17REQ8NFR9 667 aa11.41□□□□□ -0.58
CPNE4-210ENST00000512332 FLIIQ13045 1269 aa11.41□□□□□ -0.58
CPNE4-210ENST00000512332 CLEC17AQ6ZS10 378 aa11.41□□□□□ -0.58
CPNE4-210ENST00000512332 CHMP4AQ9BY43 222 aa11.41□□□□□ -0.58
CPNE4-210ENST00000512332 PXDNLA1KZ92 1463 aa11.41□□□□□ -0.58
CPNE4-210ENST00000512332 CD2BP2O95400 341 aaKnown RBP11.4□□□□□ -0.58
CPNE4-210ENST00000512332 GBP4Q96PP9 640 aa11.4□□□□□ -0.58
CPNE4-210ENST00000512332 ISY1Q9ULR0 285 aaKnown RBP11.4□□□□□ -0.58
CPNE4-210ENST00000512332 PHF8Q9UPP1 1060 aa11.4□□□□□ -0.58
CPNE4-210ENST00000512332 F6X3S4 739 aa11.4□□□□□ -0.58
CPNE4-210ENST00000512332 REC8O95072 547 aa11.4□□□□□ -0.58
CPNE4-210ENST00000512332 SLC4A10Q6U841 1118 aa11.4□□□□□ -0.58
CPNE4-210ENST00000512332 OTUD7AQ8TE49 926 aaPredicted RBP11.4□□□□□ -0.58
CPNE4-210ENST00000512332 IP6K1Q92551 441 aa11.4□□□□□ -0.58
CPNE4-210ENST00000512332 TNPO1Q92973 898 aaKnown RBP11.4□□□□□ -0.58
CPNE4-210ENST00000512332 CEMIPQ8WUJ3 1361 aa11.39□□□□□ -0.59
CPNE4-210ENST00000512332 ATP8B2P98198 1209 aa11.39□□□□□ -0.59
CPNE4-210ENST00000512332 SKOR2Q2VWA4 1001 aaPredicted RBP11.39□□□□□ -0.59
CPNE4-210ENST00000512332 CHD2O14647 1828 aaKnown RBP11.39□□□□□ -0.59
CPNE4-210ENST00000512332 N4BP2Q86UW6 1770 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms