RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ADH1CP00326 375 aa7.39□□□□□ -1.23
HMGB1P28-201ENST00000507778 MYCP01106 439 aaPredicted RBP7.39□□□□□ -1.23
HMGB1P28-201ENST00000507778 ZNF697Q5TEC3 545 aa7.39□□□□□ -1.23
HMGB1P28-201ENST00000507778 STK32AQ8WU08 396 aa7.39□□□□□ -1.23
HMGB1P28-201ENST00000507778 PRKD2Q9BZL6 878 aa7.39□□□□□ -1.23
HMGB1P28-201ENST00000507778 ZBTB7BO15156 539 aaPredicted RBP7.38□□□□□ -1.23
HMGB1P28-201ENST00000507778 FOXC1Q12948 553 aa7.38□□□□□ -1.23
HMGB1P28-201ENST00000507778 TMEM164Q5U3C3 297 aa7.38□□□□□ -1.23
HMGB1P28-201ENST00000507778 ZNF594Q96JF6 807 aaPredicted RBP7.38□□□□□ -1.23
HMGB1P28-201ENST00000507778 IRX2Q9BZI1 471 aaPredicted RBP7.38□□□□□ -1.23
HMGB1P28-201ENST00000507778 RBM19Q9Y4C8 960 aaKnown RBP7.38□□□□□ -1.23
HMGB1P28-201ENST00000507778 PCDHGA11Q9Y5H2 935 aa7.38□□□□□ -1.23
HMGB1P28-201ENST00000507778 V9GY48 417 aaPredicted RBP7.38□□□□□ -1.23
HMGB1P28-201ENST00000507778 BRD1O95696 1058 aa7.37□□□□□ -1.23
HMGB1P28-201ENST00000507778 PSME1Q06323 249 aa7.37□□□□□ -1.23
HMGB1P28-201ENST00000507778 DPYDQ12882 1025 aa7.37□□□□□ -1.23
HMGB1P28-201ENST00000507778 CC2D2BQ6DHV5 1058 aa7.37□□□□□ -1.23
HMGB1P28-201ENST00000507778 CCDC116Q8IYX3 515 aa7.37□□□□□ -1.23
HMGB1P28-201ENST00000507778 SIX5Q8N196 739 aa7.37□□□□□ -1.23
HMGB1P28-201ENST00000507778 KIAA1024Q9UPX6 916 aa7.37□□□□□ -1.23
HMGB1P28-201ENST00000507778 ALDH1A1P00352 501 aa7.36□□□□□ -1.23
HMGB1P28-201ENST00000507778 SCTRP47872 440 aa7.36□□□□□ -1.23
HMGB1P28-201ENST00000507778 ERVK-9P63128 1117 aa7.36□□□□□ -1.23
HMGB1P28-201ENST00000507778 PPP1R26Q5T8A7 1209 aaPredicted RBP7.36□□□□□ -1.23
HMGB1P28-201ENST00000507778 CCDC102BQ68D86 513 aa7.36□□□□□ -1.23
HMGB1P28-201ENST00000507778 TMPRSS4Q9NRS4 437 aa7.36□□□□□ -1.23
HMGB1P28-201ENST00000507778 PKD2L1Q9P0L9 805 aa7.36□□□□□ -1.23
HMGB1P28-201ENST00000507778 DKK1O94907 266 aa7.35□□□□□ -1.23
HMGB1P28-201ENST00000507778 SEC13P55735 322 aa7.35□□□□□ -1.23
HMGB1P28-201ENST00000507778 MYT1Q01538 1121 aa7.35□□□□□ -1.23
HMGB1P28-201ENST00000507778 TPCN2Q8NHX9 752 aa7.35□□□□□ -1.23
HMGB1P28-201ENST00000507778 SNIP1Q8TAD8 396 aaKnown RBP7.35□□□□□ -1.23
HMGB1P28-201ENST00000507778 CYLDQ9NQC7 956 aa7.35□□□□□ -1.23
HMGB1P28-201ENST00000507778 PATL2C9JE40 543 aaKnown RBP7.34□□□□□ -1.23
HMGB1P28-201ENST00000507778 B4GALNT3Q6L9W6 998 aa7.34□□□□□ -1.23
HMGB1P28-201ENST00000507778 ZNF784Q8NCA9 323 aaPredicted RBP7.34□□□□□ -1.23
HMGB1P28-201ENST00000507778 PGPEP1Q9NXJ5 209 aa7.34□□□□□ -1.23
HMGB1P28-201ENST00000507778 PODXL2Q9NZ53 605 aa7.34□□□□□ -1.23
HMGB1P28-201ENST00000507778 EMILIN1Q9Y6C2 1016 aa7.34□□□□□ -1.23
HMGB1P28-201ENST00000507778 WASF2Q9Y6W5 498 aa7.34□□□□□ -1.23
HMGB1P28-201ENST00000507778 SFI1A8K8P3 1242 aa7.33□□□□□ -1.24
HMGB1P28-201ENST00000507778 NR3C2P08235 984 aa7.33□□□□□ -1.24
HMGB1P28-201ENST00000507778 KCNA1Q09470 495 aa7.33□□□□□ -1.24
HMGB1P28-201ENST00000507778 FAM69CQ0P6D2 419 aa7.33□□□□□ -1.24
HMGB1P28-201ENST00000507778 SWI5Q1ZZU3 235 aa7.33□□□□□ -1.24
HMGB1P28-201ENST00000507778 CLP1Q92989 425 aaKnown RBP7.33□□□□□ -1.24
HMGB1P28-201ENST00000507778 OSBPL3Q9H4L5 887 aa7.33□□□□□ -1.24
HMGB1P28-201ENST00000507778 TTC24A2A3L6 582 aaPredicted RBP7.32□□□□□ -1.24
HMGB1P28-201ENST00000507778 GDF9O60383 454 aa7.32□□□□□ -1.24
HMGB1P28-201ENST00000507778 LILRA1O75019 489 aa7.32□□□□□ -1.24
HMGB1P28-201ENST00000507778 NNTQ13423 1086 aa7.32□□□□□ -1.24
HMGB1P28-201ENST00000507778 CYP4X1Q8N118 509 aa7.32□□□□□ -1.24
HMGB1P28-201ENST00000507778 ADD1P35611 737 aaKnown RBP7.3□□□□□ -1.24
HMGB1P28-201ENST00000507778 CYP2U1Q7Z449 544 aa7.3□□□□□ -1.24
HMGB1P28-201ENST00000507778 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.3□□□□□ -1.24
HMGB1P28-201ENST00000507778 HINFPQ9BQA5 517 aa7.3□□□□□ -1.24
HMGB1P28-201ENST00000507778 J3QL48 77 aa7.29□□□□□ -1.24
HMGB1P28-201ENST00000507778 M0R2N6 131 aa7.29□□□□□ -1.24
HMGB1P28-201ENST00000507778 TNFRSF10AO00220 468 aa7.29□□□□□ -1.24
HMGB1P28-201ENST00000507778 GNRH1P01148 92 aa7.29□□□□□ -1.24
HMGB1P28-201ENST00000507778 SSFA2P28290 1259 aa7.29□□□□□ -1.24
HMGB1P28-201ENST00000507778 GDF10P55107 478 aa7.29□□□□□ -1.24
HMGB1P28-201ENST00000507778 ZNF358Q9NW07 568 aa7.29□□□□□ -1.24
HMGB1P28-201ENST00000507778 TOR4AQ9NXH8 423 aa7.29□□□□□ -1.24
HMGB1P28-201ENST00000507778 SLAIN2Q9P270 581 aa7.29□□□□□ -1.24
HMGB1P28-201ENST00000507778 TMEM229AB2RXF0 380 aa7.28□□□□□ -1.24
HMGB1P28-201ENST00000507778 BACH1O14867 736 aa7.28□□□□□ -1.24
HMGB1P28-201ENST00000507778 ATP2B4P23634 1241 aa7.28□□□□□ -1.24
HMGB1P28-201ENST00000507778 SCNN1DP51172 638 aa7.28□□□□□ -1.24
HMGB1P28-201ENST00000507778 ESCO1Q5FWF5 840 aa7.28□□□□□ -1.24
HMGB1P28-201ENST00000507778 TSEN2Q8NCE0 465 aaKnown RBP7.28□□□□□ -1.24
HMGB1P28-201ENST00000507778 WASLO00401 505 aaPredicted RBP7.27□□□□□ -1.25
HMGB1P28-201ENST00000507778 INHAP05111 366 aa7.27□□□□□ -1.25
HMGB1P28-201ENST00000507778 WDR4P57081 412 aaKnown RBP7.27□□□□□ -1.25
HMGB1P28-201ENST00000507778 PRR20EP86478 221 aa7.27□□□□□ -1.25
HMGB1P28-201ENST00000507778 PRR20CP86479 221 aa7.27□□□□□ -1.25
HMGB1P28-201ENST00000507778 PRR20DP86480 221 aa7.27□□□□□ -1.25
HMGB1P28-201ENST00000507778 PRR20BP86481 221 aa7.27□□□□□ -1.25
HMGB1P28-201ENST00000507778 PRR20AP86496 221 aa7.27□□□□□ -1.25
HMGB1P28-201ENST00000507778 LAPTM4AQ15012 233 aa7.27□□□□□ -1.25
HMGB1P28-201ENST00000507778 PHLDB3Q6NSJ2 640 aa7.27□□□□□ -1.25
HMGB1P28-201ENST00000507778 GZF1Q9H116 711 aaPredicted RBP7.27□□□□□ -1.25
HMGB1P28-201ENST00000507778 ETNK1Q9HBU6 452 aa7.27□□□□□ -1.25
HMGB1P28-201ENST00000507778 PRMT3O60678 531 aa7.26□□□□□ -1.25
HMGB1P28-201ENST00000507778 ZIC2O95409 532 aaPredicted RBP7.26□□□□□ -1.25
HMGB1P28-201ENST00000507778 STAU1O95793 577 aaKnown RBP7.26□□□□□ -1.25
HMGB1P28-201ENST00000507778 SMPD1P17405 629 aa7.26□□□□□ -1.25
HMGB1P28-201ENST00000507778 ARID4AP29374 1257 aaPredicted RBP7.26□□□□□ -1.25
HMGB1P28-201ENST00000507778 CCER1Q8TC90 406 aaPredicted RBP7.26□□□□□ -1.25
HMGB1P28-201ENST00000507778 ITPKCQ96DU7 683 aa7.26□□□□□ -1.25
HMGB1P28-201ENST00000507778 PRIMPOLQ96LW4 560 aa7.26□□□□□ -1.25
HMGB1P28-201ENST00000507778 KLF16Q9BXK1 252 aaPredicted RBP7.26□□□□□ -1.25
HMGB1P28-201ENST00000507778 SERTAD1Q9UHV2 236 aa7.26□□□□□ -1.25
HMGB1P28-201ENST00000507778 IVNS1ABPQ9Y6Y0 642 aa7.26□□□□□ -1.25
HMGB1P28-201ENST00000507778 LGR5O75473 907 aa7.25□□□□□ -1.25
HMGB1P28-201ENST00000507778 ADH1AP07327 375 aa7.25□□□□□ -1.25
HMGB1P28-201ENST00000507778 CBLBQ13191 982 aa7.25□□□□□ -1.25
HMGB1P28-201ENST00000507778 TRIM67Q6ZTA4 783 aa7.25□□□□□ -1.25
HMGB1P28-201ENST00000507778 Q6ZVU0 165 aa7.25□□□□□ -1.25
HMGB1P28-201ENST00000507778 SLC4A9Q96Q91 983 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms