RNA–Protein interactions for RNA: ENST00000507597.5

USP53-203, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 3

Gene USP53, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-203ENST00000507597 GLI3P10071 1580 aa26.67■■□□□ 1.86
USP53-203ENST00000507597 PDE3BQ13370 1112 aa26.67■■□□□ 1.86
USP53-203ENST00000507597 MIER1Q8N108 512 aa26.66■■□□□ 1.86
USP53-203ENST00000507597 ZCRB1Q8TBF4 217 aaKnown RBP26.65■■□□□ 1.86
USP53-203ENST00000507597 DISP2A7MBM2 1401 aa26.64■■□□□ 1.85
USP53-203ENST00000507597 AEBP1Q8IUX7 1158 aa26.63■■□□□ 1.85
USP53-203ENST00000507597 RGPD1P0DJD0 1748 aa26.62■■□□□ 1.85
USP53-203ENST00000507597 RGPD2P0DJD1 1756 aa26.62■■□□□ 1.85
USP53-203ENST00000507597 MAPK8IP3Q9UPT6 1336 aa26.62■■□□□ 1.85
USP53-203ENST00000507597 PRKAR2BP31323 418 aa26.61■■□□□ 1.85
USP53-203ENST00000507597 PNISRQ8TF01 805 aaKnown RBP26.61■■□□□ 1.85
USP53-203ENST00000507597 RSPH6AQ9H0K4 717 aa26.61■■□□□ 1.85
USP53-203ENST00000507597 OVOS2A0A0G2JMS6 1433 aa26.61■■□□□ 1.85
USP53-203ENST00000507597 CCDC184Q52MB2 194 aa26.6■■□□□ 1.85
USP53-203ENST00000507597 ADAMTS8Q9UP79 889 aa26.6■■□□□ 1.85
USP53-203ENST00000507597 GAS2L2Q8NHY3 880 aa26.59■■□□□ 1.85
USP53-203ENST00000507597 PCDH11XQ9BZA7 1347 aa26.59■■□□□ 1.85
USP53-203ENST00000507597 PCDH11YQ9BZA8 1340 aa26.59■■□□□ 1.85
USP53-203ENST00000507597 PARP4Q9UKK3 1724 aaKnown RBP26.59■■□□□ 1.85
USP53-203ENST00000507597 KRT27Q7Z3Y8 459 aa26.58■■□□□ 1.85
USP53-203ENST00000507597 MEGF6O75095 1541 aa26.57■■□□□ 1.84
USP53-203ENST00000507597 HSP90AB1P08238 724 aaKnown RBP26.57■■□□□ 1.84
USP53-203ENST00000507597 C1orf141Q5JVX7 400 aa26.57■■□□□ 1.84
USP53-203ENST00000507597 TNS2Q63HR2 1409 aa26.56■■□□□ 1.84
USP53-203ENST00000507597 IFNL2Q8IZJ0 200 aa26.56■■□□□ 1.84
USP53-203ENST00000507597 DDX54Q8TDD1 881 aaKnown RBP26.56■■□□□ 1.84
USP53-203ENST00000507597 RUNDC1Q96C34 613 aa26.56■■□□□ 1.84
USP53-203ENST00000507597 THSD7AQ9UPZ6 1657 aa26.56■■□□□ 1.84
USP53-203ENST00000507597 FAM9BQ8IZU0 186 aa26.55■■□□□ 1.84
USP53-203ENST00000507597 RGS12O14924 1447 aa26.54■■□□□ 1.84
USP53-203ENST00000507597 WNK3Q9BYP7 1800 aa26.53■■□□□ 1.84
USP53-203ENST00000507597 ZNF530Q6P9A1 599 aaPredicted RBP26.53■■□□□ 1.84
USP53-203ENST00000507597 AKAP4Q5JQC9 854 aa26.51■■□□□ 1.83
USP53-203ENST00000507597 PLEKHF1Q96S99 279 aa26.51■■□□□ 1.83
USP53-203ENST00000507597 FAM196AQ6ZSG2 479 aa26.5■■□□□ 1.83
USP53-203ENST00000507597 MTHFSDQ2M296 383 aaKnown RBP26.49■■□□□ 1.83
USP53-203ENST00000507597 PHKG2P15735 406 aa26.48■■□□□ 1.83
USP53-203ENST00000507597 RTF1Q92541 710 aaKnown RBP26.48■■□□□ 1.83
USP53-203ENST00000507597 LRRC37A3O60309 1634 aa26.47■■□□□ 1.83
USP53-203ENST00000507597 LMOD3Q0VAK6 560 aa26.47■■□□□ 1.83
USP53-203ENST00000507597 MARCH10Q8NA82 808 aaPredicted RBP26.47■■□□□ 1.83
USP53-203ENST00000507597 PHACTR3Q96KR7 559 aa26.47■■□□□ 1.83
USP53-203ENST00000507597 GNAT3A8MTJ3 354 aa26.46■■□□□ 1.83
USP53-203ENST00000507597 HTATSF1O43719 755 aaKnown RBP26.46■■□□□ 1.83
USP53-203ENST00000507597 NFE2L2Q16236 605 aa26.46■■□□□ 1.83
USP53-203ENST00000507597 CCDC146Q8IYE0 955 aa26.46■■□□□ 1.83
USP53-203ENST00000507597 PKD1L3Q7Z443 1732 aa26.45■■□□□ 1.83
USP53-203ENST00000507597 CYP27B1O15528 508 aa26.45■■□□□ 1.82
USP53-203ENST00000507597 NKX1-1Q15270 411 aaPredicted RBP26.45■■□□□ 1.82
USP53-203ENST00000507597 DCAF5Q96JK2 942 aa26.45■■□□□ 1.82
USP53-203ENST00000507597 NGEFQ8N5V2 710 aa26.44■■□□□ 1.82
USP53-203ENST00000507597 BCL9O00512 1426 aa26.42■■□□□ 1.82
USP53-203ENST00000507597 TMPOP42166 694 aaKnown RBP26.41■■□□□ 1.82
USP53-203ENST00000507597 RIPK4P57078 832 aa26.41■■□□□ 1.82
USP53-203ENST00000507597 MAP3K5Q99683 1374 aa26.41■■□□□ 1.82
USP53-203ENST00000507597 NCBP3Q53F19 620 aaKnown RBP26.4■■□□□ 1.82
USP53-203ENST00000507597 ERVV-2B6SEH9 535 aa26.38■■□□□ 1.81
USP53-203ENST00000507597 APAF1O14727 1248 aa26.38■■□□□ 1.81
USP53-203ENST00000507597 BRWD3Q6RI45 1802 aa26.37■■□□□ 1.81
USP53-203ENST00000507597 NEUROD2Q15784 382 aa26.36■■□□□ 1.81
USP53-203ENST00000507597 MPRIPQ6WCQ1 1025 aa26.36■■□□□ 1.81
USP53-203ENST00000507597 RNMTO43148 476 aaKnown RBP26.35■■□□□ 1.81
USP53-203ENST00000507597 CABP4P57796 275 aa26.35■■□□□ 1.81
USP53-203ENST00000507597 TEFQ10587 303 aa26.35■■□□□ 1.81
USP53-203ENST00000507597 SF3B2Q13435 895 aaKnown RBP26.35■■□□□ 1.81
USP53-203ENST00000507597 FAM182BQ5T319 152 aa26.35■■□□□ 1.81
USP53-203ENST00000507597 CALD1Q05682 793 aaKnown RBP26.34■■□□□ 1.81
USP53-203ENST00000507597 CCDC125Q86Z20 511 aa26.34■■□□□ 1.81
USP53-203ENST00000507597 SYTL4Q96C24 671 aaPredicted RBP26.34■■□□□ 1.81
USP53-203ENST00000507597 TMOD3Q9NYL9 352 aa26.33■■□□□ 1.81
USP53-203ENST00000507597 SHANK3Q9BYB0 1731 aa26.32■■□□□ 1.8
USP53-203ENST00000507597 ACSBG1Q96GR2 724 aa26.32■■□□□ 1.8
USP53-203ENST00000507597 BCL11BQ9C0K0 894 aaPredicted RBP26.32■■□□□ 1.8
USP53-203ENST00000507597 PRIM1P49642 420 aaKnown RBP26.31■■□□□ 1.8
USP53-203ENST00000507597 RRP7AQ9Y3A4 280 aaKnown RBP26.31■■□□□ 1.8
USP53-203ENST00000507597 CCDC27Q2M243 656 aa26.3■■□□□ 1.8
USP53-203ENST00000507597 LGR6Q9HBX8 967 aa26.29■■□□□ 1.8
USP53-203ENST00000507597 TRIM37O94972 964 aa26.28■■□□□ 1.8
USP53-203ENST00000507597 HMGB2P26583 209 aaKnown RBP26.28■■□□□ 1.8
USP53-203ENST00000507597 IL17REQ8NFR9 667 aa26.28■■□□□ 1.8
USP53-203ENST00000507597 SLC52A2Q9HAB3 445 aa26.28■■□□□ 1.8
USP53-203ENST00000507597 MCM10Q7L590 875 aa26.27■■□□□ 1.8
USP53-203ENST00000507597 KDM6AO15550 1401 aaPredicted RBP26.26■■□□□ 1.79
USP53-203ENST00000507597 CEMIPQ8WUJ3 1361 aa26.26■■□□□ 1.79
USP53-203ENST00000507597 SMARCC1Q92922 1105 aaPredicted RBP26.26■■□□□ 1.79
USP53-203ENST00000507597 NFATC2IPQ8NCF5 419 aa26.25■■□□□ 1.79
USP53-203ENST00000507597 TAF7Q15545 349 aaPredicted RBP26.24■■□□□ 1.79
USP53-203ENST00000507597 DCTN1Q14203 1278 aa26.23■■□□□ 1.79
USP53-203ENST00000507597 BABAM1Q9NWV8 329 aa26.23■■□□□ 1.79
USP53-203ENST00000507597 TRIM35Q9UPQ4 493 aa26.23■■□□□ 1.79
USP53-203ENST00000507597 KCNQ2O43526 872 aa26.22■■□□□ 1.79
USP53-203ENST00000507597 PIGBQ92521 554 aa26.22■■□□□ 1.79
USP53-203ENST00000507597 KAT6BQ8WYB5 2073 aa26.22■■□□□ 1.79
USP53-203ENST00000507597 APBA3O96018 575 aa26.21■■□□□ 1.79
USP53-203ENST00000507597 BAG6P46379 1132 aa26.21■■□□□ 1.79
USP53-203ENST00000507597 TTC5Q8N0Z6 440 aa26.21■■□□□ 1.79
USP53-203ENST00000507597 SALL2Q9Y467 1007 aaPredicted RBP26.21■■□□□ 1.79
USP53-203ENST00000507597 SCN11AQ9UI33 1791 aa26.2■■□□□ 1.79
USP53-203ENST00000507597 BTBD11A6QL63 1104 aa26.2■■□□□ 1.78
USP53-203ENST00000507597 WDR63Q8IWG1 891 aa26.2■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms