RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 PCDH11XQ9BZA7 1347 aa22.57■■□□□ 1.2
SNCA-209ENST00000506244 PCDH11YQ9BZA8 1340 aa22.57■■□□□ 1.2
SNCA-209ENST00000506244 MTHFSP49914 203 aa22.56■■□□□ 1.2
SNCA-209ENST00000506244 CNGB1Q14028 1251 aaPredicted RBP22.56■■□□□ 1.2
SNCA-209ENST00000506244 DEFB132Q7Z7B7 95 aa22.56■■□□□ 1.2
SNCA-209ENST00000506244 RGPD3A6NKT7 1758 aaPredicted RBP22.55■■□□□ 1.2
SNCA-209ENST00000506244 RGPD4Q7Z3J3 1758 aa22.55■■□□□ 1.2
SNCA-209ENST00000506244 BCL11BQ9C0K0 894 aaPredicted RBP22.55■■□□□ 1.2
SNCA-209ENST00000506244 APBA3O96018 575 aa22.54■■□□□ 1.2
SNCA-209ENST00000506244 DDX54Q8TDD1 881 aaKnown RBP22.54■■□□□ 1.2
SNCA-209ENST00000506244 SPG7Q9UQ90 795 aa22.52■■□□□ 1.2
SNCA-209ENST00000506244 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.51■■□□□ 1.19
SNCA-209ENST00000506244 IL13P35225 146 aa22.5■■□□□ 1.19
SNCA-209ENST00000506244 EN1Q05925 392 aaPredicted RBP22.5■■□□□ 1.19
SNCA-209ENST00000506244 CFAP53Q96M91 514 aa22.5■■□□□ 1.19
SNCA-209ENST00000506244 DOT1LQ8TEK3 1739 aa22.5■■□□□ 1.19
SNCA-209ENST00000506244 COL3A1P02461 1466 aaPredicted RBP22.49■■□□□ 1.19
SNCA-209ENST00000506244 DIAPH1O60610 1272 aaKnown RBP22.49■■□□□ 1.19
SNCA-209ENST00000506244 KDRP35968 1356 aa22.49■■□□□ 1.19
SNCA-209ENST00000506244 RREB1Q92766 1687 aa22.49■■□□□ 1.19
SNCA-209ENST00000506244 DDX10Q13206 875 aaKnown RBP22.48■■□□□ 1.19
SNCA-209ENST00000506244 ACSBG1Q96GR2 724 aa22.47■■□□□ 1.19
SNCA-209ENST00000506244 PPP2R1AP30153 589 aa22.46■■□□□ 1.19
SNCA-209ENST00000506244 CAMKK2Q96RR4 588 aa22.46■■□□□ 1.19
SNCA-209ENST00000506244 PLSCR1O15162 318 aa22.45■■□□□ 1.18
SNCA-209ENST00000506244 EZH2Q15910 746 aaKnown RBP22.45■■□□□ 1.18
SNCA-209ENST00000506244 BTAF1O14981 1849 aa22.45■■□□□ 1.18
SNCA-209ENST00000506244 SULT6B1Q6IMI4 303 aa22.44■■□□□ 1.18
SNCA-209ENST00000506244 CYP27B1O15528 508 aa22.43■■□□□ 1.18
SNCA-209ENST00000506244 KCNQ2O43526 872 aa22.43■■□□□ 1.18
SNCA-209ENST00000506244 AMOTQ4VCS5 1084 aa22.43■■□□□ 1.18
SNCA-209ENST00000506244 PLEKHO1Q53GL0 409 aaPredicted RBP22.43■■□□□ 1.18
SNCA-209ENST00000506244 KAT6BQ8WYB5 2073 aa22.43■■□□□ 1.18
SNCA-209ENST00000506244 NUP188Q5SRE5 1749 aa22.43■■□□□ 1.18
SNCA-209ENST00000506244 RALBP1Q15311 655 aa22.42■■□□□ 1.18
SNCA-209ENST00000506244 AEBP1Q8IUX7 1158 aa22.42■■□□□ 1.18
SNCA-209ENST00000506244 IFNL2Q8IZJ0 200 aa22.42■■□□□ 1.18
SNCA-209ENST00000506244 SYTL4Q96C24 671 aaPredicted RBP22.42■■□□□ 1.18
SNCA-209ENST00000506244 PTF1AQ7RTS3 328 aa22.4■■□□□ 1.18
SNCA-209ENST00000506244 NUDCQ9Y266 331 aa22.4■■□□□ 1.18
SNCA-209ENST00000506244 U2SURPO15042 1029 aaKnown RBP22.39■■□□□ 1.17
SNCA-209ENST00000506244 HSP90AB1P08238 724 aaKnown RBP22.39■■□□□ 1.17
SNCA-209ENST00000506244 NKX1-1Q15270 411 aaPredicted RBP22.39■■□□□ 1.17
SNCA-209ENST00000506244 TOGARAM1Q9Y4F4 1720 aa22.39■■□□□ 1.17
SNCA-209ENST00000506244 PHKG2P15735 406 aa22.38■■□□□ 1.17
SNCA-209ENST00000506244 PRIM1P49642 420 aaKnown RBP22.38■■□□□ 1.17
SNCA-209ENST00000506244 ZNF316A6NFI3 1004 aaPredicted RBP22.37■■□□□ 1.17
SNCA-209ENST00000506244 HMOX1P09601 288 aa22.37■■□□□ 1.17
SNCA-209ENST00000506244 C1orf141Q5JVX7 400 aa22.37■■□□□ 1.17
SNCA-209ENST00000506244 ZNF530Q6P9A1 599 aaPredicted RBP22.37■■□□□ 1.17
SNCA-209ENST00000506244 NBPF14Q5TI25 921 aa22.36■■□□□ 1.17
SNCA-209ENST00000506244 TXNRD1Q16881 649 aa22.34■■□□□ 1.17
SNCA-209ENST00000506244 ITGB4P16144 1822 aa22.34■■□□□ 1.17
SNCA-209ENST00000506244 DCAF5Q96JK2 942 aa22.33■■□□□ 1.17
SNCA-209ENST00000506244 MYBBP1AQ9BQG0 1328 aaKnown RBP22.32■■□□□ 1.16
SNCA-209ENST00000506244 SLC27A3Q5K4L6 730 aa22.31■■□□□ 1.16
SNCA-209ENST00000506244 TMOD3Q9NYL9 352 aa22.31■■□□□ 1.16
SNCA-209ENST00000506244 LY75O60449 1722 aa22.31■■□□□ 1.16
SNCA-209ENST00000506244 MPRIPQ6WCQ1 1025 aa22.3■■□□□ 1.16
SNCA-209ENST00000506244 ERVV-2B6SEH9 535 aa22.29■■□□□ 1.16
SNCA-209ENST00000506244 U2AF1L5P0DN76 240 aaPredicted RBP22.29■■□□□ 1.16
SNCA-209ENST00000506244 HMGB2P26583 209 aaKnown RBP22.29■■□□□ 1.16
SNCA-209ENST00000506244 U2AF1Q01081 240 aaKnown RBP eCLIP22.29■■□□□ 1.16
SNCA-209ENST00000506244 AKAP4Q5JQC9 854 aa22.29■■□□□ 1.16
SNCA-209ENST00000506244 SMARCC1Q92922 1105 aaPredicted RBP22.29■■□□□ 1.16
SNCA-209ENST00000506244 KDM6AO15550 1401 aaPredicted RBP22.29■■□□□ 1.16
SNCA-209ENST00000506244 PROM2Q8N271 834 aa22.28■■□□□ 1.16
SNCA-209ENST00000506244 PAPPAQ13219 1627 aa22.28■■□□□ 1.16
SNCA-209ENST00000506244 PALLDQ8WX93 1383 aa22.27■■□□□ 1.16
SNCA-209ENST00000506244 R3HDM1Q15032 1099 aaKnown RBP22.27■■□□□ 1.16
SNCA-209ENST00000506244 GAS2L2Q8NHY3 880 aa22.27■■□□□ 1.16
SNCA-209ENST00000506244 RSPH6AQ9H0K4 717 aa22.26■■□□□ 1.15
SNCA-209ENST00000506244 SCN11AQ9UI33 1791 aa22.25■■□□□ 1.15
SNCA-209ENST00000506244 PSDA5PKW4 1024 aaPredicted RBP22.25■■□□□ 1.15
SNCA-209ENST00000506244 FCHSD2O94868 740 aa22.25■■□□□ 1.15
SNCA-209ENST00000506244 PRKAR2BP31323 418 aa22.25■■□□□ 1.15
SNCA-209ENST00000506244 PIGBQ92521 554 aa22.25■■□□□ 1.15
SNCA-209ENST00000506244 PRKRIP1Q9H875 184 aaPredicted RBP22.25■■□□□ 1.15
SNCA-209ENST00000506244 STK32BQ9NY57 414 aa22.25■■□□□ 1.15
SNCA-209ENST00000506244 NEFMP07197 916 aa22.24■■□□□ 1.15
SNCA-209ENST00000506244 MTHFSDQ2M296 383 aaKnown RBP22.24■■□□□ 1.15
SNCA-209ENST00000506244 CCNL1Q9UK58 526 aaPredicted RBP22.24■■□□□ 1.15
SNCA-209ENST00000506244 MRC1P22897 1456 aa22.23■■□□□ 1.15
SNCA-209ENST00000506244 CABP4P57796 275 aa22.23■■□□□ 1.15
SNCA-209ENST00000506244 ANO8Q9HCE9 1232 aaPredicted RBP22.23■■□□□ 1.15
SNCA-209ENST00000506244 MAP3K5Q99683 1374 aa22.23■■□□□ 1.15
SNCA-209ENST00000506244 PNNQ9H307 717 aaKnown RBP22.22■■□□□ 1.15
SNCA-209ENST00000506244 ADAMTS7Q9UKP4 1686 aa22.22■■□□□ 1.15
SNCA-209ENST00000506244 C5P01031 1676 aa22.2■■□□□ 1.15
SNCA-209ENST00000506244 LRRC4BQ9NT99 713 aa22.2■■□□□ 1.14
SNCA-209ENST00000506244 VIRMAQ69YN4 1812 aaKnown RBP22.2■■□□□ 1.14
SNCA-209ENST00000506244 SLC15A2Q16348 729 aa22.19■■□□□ 1.14
SNCA-209ENST00000506244 LRP5O75197 1615 aa22.19■■□□□ 1.14
SNCA-209ENST00000506244 GNAT3A8MTJ3 354 aa22.18■■□□□ 1.14
SNCA-209ENST00000506244 RNMTO43148 476 aaKnown RBP22.17■■□□□ 1.14
SNCA-209ENST00000506244 SLC52A2Q9HAB3 445 aa22.17■■□□□ 1.14
SNCA-209ENST00000506244 QSER1Q2KHR3 1735 aa22.17■■□□□ 1.14
SNCA-209ENST00000506244 PHACTR3Q96KR7 559 aa22.16■■□□□ 1.14
SNCA-209ENST00000506244 ASAP1Q9ULH1 1129 aa22.16■■□□□ 1.14
SNCA-209ENST00000506244 CASZ1Q86V15 1759 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms