RNA–Protein interactions for RNA: ENST00000504672.5

PDGFC-204, Transcript of platelet derived growth factor C, humanhuman

TSL 5

Gene PDGFC, Length 786 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-204ENST00000504672 KAT6BQ8WYB5 2073 aa12.97□□□□□ -0.33
PDGFC-204ENST00000504672 FBLN1P23142 703 aa12.97□□□□□ -0.33
PDGFC-204ENST00000504672 TMC1Q8TDI8 760 aa12.97□□□□□ -0.33
PDGFC-204ENST00000504672 ZCRB1Q8TBF4 217 aaKnown RBP12.96□□□□□ -0.33
PDGFC-204ENST00000504672 IP6K1Q92551 441 aa12.96□□□□□ -0.33
PDGFC-204ENST00000504672 ADCY9O60503 1353 aa12.95□□□□□ -0.34
PDGFC-204ENST00000504672 NSD2O96028 1365 aa12.95□□□□□ -0.34
PDGFC-204ENST00000504672 ANKRD36BQ8N2N9 1353 aa12.95□□□□□ -0.34
PDGFC-204ENST00000504672 IGSF1Q8N6C5 1336 aa12.95□□□□□ -0.34
PDGFC-204ENST00000504672 APLP1P51693 650 aa12.95□□□□□ -0.34
PDGFC-204ENST00000504672 COL13A1Q5TAT6 717 aaPredicted RBP12.95□□□□□ -0.34
PDGFC-204ENST00000504672 AMIGO3Q86WK7 504 aa12.95□□□□□ -0.34
PDGFC-204ENST00000504672 L3MBTL2Q969R5 705 aa12.95□□□□□ -0.34
PDGFC-204ENST00000504672 SLC12A5Q9H2X9 1139 aa12.95□□□□□ -0.34
PDGFC-204ENST00000504672 USP31Q70CQ4 1352 aa12.94□□□□□ -0.34
PDGFC-204ENST00000504672 HTRA3P83110 453 aa12.94□□□□□ -0.34
PDGFC-204ENST00000504672 PHF14O94880 888 aa12.93□□□□□ -0.34
PDGFC-204ENST00000504672 USP47Q96K76 1375 aa12.93□□□□□ -0.34
PDGFC-204ENST00000504672 USHBP1Q8N6Y0 703 aa12.92□□□□□ -0.34
PDGFC-204ENST00000504672 QRICH2Q9H0J4 1663 aa12.92□□□□□ -0.34
PDGFC-204ENST00000504672 SBNO2Q9Y2G9 1366 aa12.92□□□□□ -0.34
PDGFC-204ENST00000504672 MPRIPQ6WCQ1 1025 aa12.91□□□□□ -0.34
PDGFC-204ENST00000504672 KIAA1210Q9ULL0 1709 aa12.91□□□□□ -0.34
PDGFC-204ENST00000504672 TOMM70O94826 608 aa12.9□□□□□ -0.34
PDGFC-204ENST00000504672 AMPHP49418 695 aa12.9□□□□□ -0.34
PDGFC-204ENST00000504672 HDGFL2Q7Z4V5 671 aaPredicted RBP12.9□□□□□ -0.34
PDGFC-204ENST00000504672 FLAD1Q8NFF5 587 aa12.9□□□□□ -0.34
PDGFC-204ENST00000504672 NMRK2Q9NPI5 230 aa12.9□□□□□ -0.34
PDGFC-204ENST00000504672 COL24A1Q17RW2 1714 aa12.89□□□□□ -0.35
PDGFC-204ENST00000504672 NBPF6Q5VWK0 638 aa12.89□□□□□ -0.35
PDGFC-204ENST00000504672 NBPF4Q96M43 638 aa12.89□□□□□ -0.35
PDGFC-204ENST00000504672 SIN3AQ96ST3 1273 aa12.89□□□□□ -0.35
PDGFC-204ENST00000504672 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.88□□□□□ -0.35
PDGFC-204ENST00000504672 HOXC9P31274 260 aa12.88□□□□□ -0.35
PDGFC-204ENST00000504672 ARHGAP27Q6ZUM4 889 aa12.88□□□□□ -0.35
PDGFC-204ENST00000504672 AK7Q96M32 723 aa12.88□□□□□ -0.35
PDGFC-204ENST00000504672 TUBGCP6Q96RT7 1819 aa12.88□□□□□ -0.35
PDGFC-204ENST00000504672 MAP3K19Q56UN5 1328 aa12.88□□□□□ -0.35
PDGFC-204ENST00000504672 ROCK2O75116 1388 aaKnown RBP12.87□□□□□ -0.35
PDGFC-204ENST00000504672 A0A0G2JLW4 131 aa12.87□□□□□ -0.35
PDGFC-204ENST00000504672 NEUROD1Q13562 356 aa12.87□□□□□ -0.35
PDGFC-204ENST00000504672 CD163L1Q9NR16 1453 aa12.86□□□□□ -0.35
PDGFC-204ENST00000504672 TNS4Q8IZW8 715 aa12.86□□□□□ -0.35
PDGFC-204ENST00000504672 TERF2IPQ9NYB0 399 aa12.86□□□□□ -0.35
PDGFC-204ENST00000504672 BCS1LQ9Y276 419 aa12.86□□□□□ -0.35
PDGFC-204ENST00000504672 MEGF6O75095 1541 aa12.86□□□□□ -0.35
PDGFC-204ENST00000504672 QSER1Q2KHR3 1735 aa12.85□□□□□ -0.35
PDGFC-204ENST00000504672 PALLDQ8WX93 1383 aa12.85□□□□□ -0.35
PDGFC-204ENST00000504672 RAPGEF4Q8WZA2 1011 aa12.85□□□□□ -0.35
PDGFC-204ENST00000504672 KLRG1Q96E93 195 aa12.85□□□□□ -0.35
PDGFC-204ENST00000504672 RRS1Q15050 365 aaKnown RBP12.84□□□□□ -0.35
PDGFC-204ENST00000504672 COG3Q96JB2 828 aa12.84□□□□□ -0.35
PDGFC-204ENST00000504672 MMP10P09238 476 aa12.83□□□□□ -0.36
PDGFC-204ENST00000504672 TATP17735 454 aaPredicted RBP12.83□□□□□ -0.36
PDGFC-204ENST00000504672 LINC00116Q8NCU8 138 aa12.83□□□□□ -0.36
PDGFC-204ENST00000504672 PIGBQ92521 554 aa12.83□□□□□ -0.36
PDGFC-204ENST00000504672 PCNTO95613 3336 aa12.83□□□□□ -0.36
PDGFC-204ENST00000504672 CYP27B1O15528 508 aa12.82□□□□□ -0.36
PDGFC-204ENST00000504672 C16orf71Q8IYS4 520 aaPredicted RBP12.82□□□□□ -0.36
PDGFC-204ENST00000504672 LY75O60449 1722 aa12.82□□□□□ -0.36
PDGFC-204ENST00000504672 A0A1W2PP64 1363 aa12.81□□□□□ -0.36
PDGFC-204ENST00000504672 EDC4Q6P2E9 1401 aaKnown RBP12.81□□□□□ -0.36
PDGFC-204ENST00000504672 GNPATO15228 680 aa12.81□□□□□ -0.36
PDGFC-204ENST00000504672 DPEP1P16444 411 aa12.81□□□□□ -0.36
PDGFC-204ENST00000504672 PRELPP51888 382 aa12.81□□□□□ -0.36
PDGFC-204ENST00000504672 C9orf131Q5VYM1 1079 aa12.81□□□□□ -0.36
PDGFC-204ENST00000504672 JMYQ8N9B5 988 aa12.81□□□□□ -0.36
PDGFC-204ENST00000504672 RBM46Q8TBY0 533 aaKnown RBP12.81□□□□□ -0.36
PDGFC-204ENST00000504672 SMARCC1Q92922 1105 aaPredicted RBP12.81□□□□□ -0.36
PDGFC-204ENST00000504672 DOT1LQ8TEK3 1739 aa12.81□□□□□ -0.36
PDGFC-204ENST00000504672 LTN1O94822 1766 aa12.81□□□□□ -0.36
PDGFC-204ENST00000504672 FCHSD2O94868 740 aa12.8□□□□□ -0.36
PDGFC-204ENST00000504672 ITPK1Q13572 414 aa12.8□□□□□ -0.36
PDGFC-204ENST00000504672 HSP90AB2PQ58FF8 381 aa12.8□□□□□ -0.36
PDGFC-204ENST00000504672 RRAGCQ9HB90 399 aa12.8□□□□□ -0.36
PDGFC-204ENST00000504672 LOC102724428A0A0B4J2F2 783 aa12.79□□□□□ -0.36
PDGFC-204ENST00000504672 SSFA2P28290 1259 aa12.79□□□□□ -0.36
PDGFC-204ENST00000504672 SIK1P57059 783 aa12.79□□□□□ -0.36
PDGFC-204ENST00000504672 CARD11Q9BXL7 1154 aa12.79□□□□□ -0.36
PDGFC-204ENST00000504672 ASAP1Q9ULH1 1129 aa12.79□□□□□ -0.36
PDGFC-204ENST00000504672 HMGB2P26583 209 aaKnown RBP12.78□□□□□ -0.36
PDGFC-204ENST00000504672 TGFB2P61812 414 aa12.78□□□□□ -0.36
PDGFC-204ENST00000504672 GGNBP2Q9H3C7 697 aa12.78□□□□□ -0.36
PDGFC-204ENST00000504672 CGNL1Q0VF96 1302 aa12.78□□□□□ -0.36
PDGFC-204ENST00000504672 PCDH11XQ9BZA7 1347 aa12.78□□□□□ -0.36
PDGFC-204ENST00000504672 PCDH11YQ9BZA8 1340 aa12.78□□□□□ -0.36
PDGFC-204ENST00000504672 MON2Q7Z3U7 1717 aa12.77□□□□□ -0.36
PDGFC-204ENST00000504672 ATP6V1AP38606 617 aa12.77□□□□□ -0.37
PDGFC-204ENST00000504672 PXDNLA1KZ92 1463 aa12.77□□□□□ -0.37
PDGFC-204ENST00000504672 TMF1P82094 1093 aa12.76□□□□□ -0.37
PDGFC-204ENST00000504672 FSTL1Q12841 308 aa12.76□□□□□ -0.37
PDGFC-204ENST00000504672 TRAPPC3LQ5T215 181 aa12.76□□□□□ -0.37
PDGFC-204ENST00000504672 KCNA3P22001 575 aa12.75□□□□□ -0.37
PDGFC-204ENST00000504672 C5P01031 1676 aa12.74□□□□□ -0.37
PDGFC-204ENST00000504672 FAM208AQ9UK61 1670 aaKnown RBP12.74□□□□□ -0.37
PDGFC-204ENST00000504672 FYB1O15117 783 aa12.74□□□□□ -0.37
PDGFC-204ENST00000504672 NLGN1Q8N2Q7 840 aa12.74□□□□□ -0.37
PDGFC-204ENST00000504672 ARHGEF1Q92888 912 aaKnown RBP12.74□□□□□ -0.37
PDGFC-204ENST00000504672 TMOD3Q9NYL9 352 aa12.74□□□□□ -0.37
PDGFC-204ENST00000504672 RNF181Q9P0P0 153 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms