RNA–Protein interactions for RNA: ENST00000496946.1

SNRNP48-202, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

TSL 2

Gene SNRNP48, Length 2,610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-202ENST00000496946 ZBTB7CA1YPR0 619 aa4.46□□□□□ -1.7
SNRNP48-202ENST00000496946 CDCA8Q53HL2 280 aa4.46□□□□□ -1.7
SNRNP48-202ENST00000496946 TBC1D9Q6ZT07 1266 aa4.46□□□□□ -1.7
SNRNP48-202ENST00000496946 ZNF775Q96BV0 537 aaPredicted RBP4.46□□□□□ -1.7
SNRNP48-202ENST00000496946 DGAT1O75907 488 aa4.45□□□□□ -1.7
SNRNP48-202ENST00000496946 ZEB1P37275 1124 aaPredicted RBP4.45□□□□□ -1.7
SNRNP48-202ENST00000496946 NCOA4Q13772 614 aa4.45□□□□□ -1.7
SNRNP48-202ENST00000496946 PRICKLE2Q7Z3G6 844 aa4.45□□□□□ -1.7
SNRNP48-202ENST00000496946 POLR3GLQ9BT43 218 aa4.45□□□□□ -1.7
SNRNP48-202ENST00000496946 BCCIPQ9P287 314 aaKnown RBP eCLIP4.45□□□□□ -1.7
SNRNP48-202ENST00000496946 KIAA1024Q9UPX6 916 aa4.45□□□□□ -1.7
SNRNP48-202ENST00000496946 CLSPNQ9HAW4 1339 aa4.45□□□□□ -1.7
SNRNP48-202ENST00000496946 CARNS1A5YM72 827 aa4.45□□□□□ -1.7
SNRNP48-202ENST00000496946 NR5A1Q13285 461 aa4.45□□□□□ -1.7
SNRNP48-202ENST00000496946 PROSER2Q86WR7 435 aaPredicted RBP4.45□□□□□ -1.7
SNRNP48-202ENST00000496946 MEIOBQ8N635 442 aa4.45□□□□□ -1.7
SNRNP48-202ENST00000496946 RAD21O60216 631 aa4.44□□□□□ -1.7
SNRNP48-202ENST00000496946 RHOQP17081 205 aa4.44□□□□□ -1.7
SNRNP48-202ENST00000496946 LAPTM4AQ15012 233 aa4.44□□□□□ -1.7
SNRNP48-202ENST00000496946 TBCELQ5QJ74 424 aa4.44□□□□□ -1.7
SNRNP48-202ENST00000496946 ZNF594Q96JF6 807 aaPredicted RBP4.44□□□□□ -1.7
SNRNP48-202ENST00000496946 OSBPL3Q9H4L5 887 aa4.44□□□□□ -1.7
SNRNP48-202ENST00000496946 AAMPQ13685 434 aa4.44□□□□□ -1.7
SNRNP48-202ENST00000496946 RNF135Q8IUD6 432 aa4.44□□□□□ -1.7
SNRNP48-202ENST00000496946 MAP4K5Q9Y4K4 846 aa4.44□□□□□ -1.7
SNRNP48-202ENST00000496946 GPKOWQ92917 476 aaPredicted RBP eCLIP4.43□□□□□ -1.7
SNRNP48-202ENST00000496946 KLRG1Q96E93 195 aa4.43□□□□□ -1.7
SNRNP48-202ENST00000496946 CCDC136Q96JN2 1154 aa4.43□□□□□ -1.7
SNRNP48-202ENST00000496946 USP3Q9Y6I4 520 aa4.43□□□□□ -1.7
SNRNP48-202ENST00000496946 ESPNB1AK53 854 aa4.43□□□□□ -1.7
SNRNP48-202ENST00000496946 SEMA3FQ13275 785 aa4.43□□□□□ -1.7
SNRNP48-202ENST00000496946 CRIPAKQ8N1N5 446 aa4.43□□□□□ -1.7
SNRNP48-202ENST00000496946 ALG2Q9H553 416 aa4.43□□□□□ -1.7
SNRNP48-202ENST00000496946 GPSM3Q9Y4H4 160 aa4.43□□□□□ -1.7
SNRNP48-202ENST00000496946 MEN1O00255 615 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 MAN1A2O60476 641 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 SKIP12755 728 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 SLFNL1Q499Z3 407 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 POLMQ9NP87 494 aaPredicted RBP4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 EMILIN1Q9Y6C2 1016 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 FLIIQ13045 1269 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 PHTF2Q8N3S3 785 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 PLPP7Q8NBV4 271 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 TFIP11Q9UBB9 837 aaKnown RBP4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 PARP3Q9Y6F1 533 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 A0A1W2PRU2 124 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 PHKA2P46019 1235 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 CLDN10P78369 228 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 Q6ZVU0 165 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 CALR3Q96L12 384 aaKnown RBP4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 TRIM47Q96LD4 638 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 DOLKQ9UPQ8 538 aa4.42□□□□□ -1.7
SNRNP48-202ENST00000496946 ERBB4Q15303 1308 aa4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 ZC3H4Q9UPT8 1303 aaKnown RBP4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 APBB1O00213 710 aa4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 SCNN1AP37088 669 aa4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 EIF4G2P78344 907 aaKnown RBP eCLIP4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 NAP1L5Q96NT1 182 aaPredicted RBP4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 A0A0U1RQG5 324 aaPredicted RBP4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 TTLL8A6PVC2 850 aa4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 ERVK-9P63128 1117 aa4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 CTC1Q2NKJ3 1217 aa4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 FOXD4L5Q5VV16 416 aaPredicted RBP4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 ETNK1Q9HBU6 452 aa4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 SERTAD1Q9UHV2 236 aa4.41□□□□□ -1.7
SNRNP48-202ENST00000496946 ACIN1Q9UKV3 1341 aaKnown RBP4.4□□□□□ -1.7
SNRNP48-202ENST00000496946 SENP3-EIF4A1A0A087X0R7 540 aa4.4□□□□□ -1.7
SNRNP48-202ENST00000496946 USP17L5A8MUK1 530 aa4.4□□□□□ -1.7
SNRNP48-202ENST00000496946 GLIPR1L2Q4G1C9 344 aa4.4□□□□□ -1.7
SNRNP48-202ENST00000496946 SH3PXD2AQ5TCZ1 1133 aa4.4□□□□□ -1.7
SNRNP48-202ENST00000496946 CNKSR1Q969H4 720 aa4.4□□□□□ -1.7
SNRNP48-202ENST00000496946 PALM3A6NDB9 673 aaPredicted RBP4.4□□□□□ -1.71
SNRNP48-202ENST00000496946 GPR25O00155 361 aa4.4□□□□□ -1.71
SNRNP48-202ENST00000496946 IL2RAP01589 272 aa4.4□□□□□ -1.71
SNRNP48-202ENST00000496946 SMCPP49901 116 aaPredicted RBP4.4□□□□□ -1.71
SNRNP48-202ENST00000496946 PSME1Q06323 249 aa4.4□□□□□ -1.71
SNRNP48-202ENST00000496946 CRTC2Q53ET0 693 aaPredicted RBP4.4□□□□□ -1.71
SNRNP48-202ENST00000496946 PUS7Q96PZ0 661 aaKnown RBP4.4□□□□□ -1.71
SNRNP48-202ENST00000496946 GPAMQ9HCL2 828 aa4.4□□□□□ -1.71
SNRNP48-202ENST00000496946 USP17L3A6NCW0 530 aa4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 USP17L4A6NCW7 530 aa4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 ATP5J2-PTCD1G3V325 749 aa4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 TRAK2O60296 914 aa4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 SCNN1DP51172 638 aa4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 PTSQ03393 145 aa4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 USP17L2Q6R6M4 530 aa4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 USP17L1Q7RTZ2 530 aa4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 MPNDQ8N594 471 aa4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 RNF217Q8TC41 542 aa4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 ADH1AP07327 375 aa4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 PNMA1Q8ND90 353 aa4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 CUEDC1Q9NWM3 386 aaPredicted RBP4.39□□□□□ -1.71
SNRNP48-202ENST00000496946 SPINT1O43278 529 aa4.38□□□□□ -1.71
SNRNP48-202ENST00000496946 LMOD1P29536 600 aaPredicted RBP4.38□□□□□ -1.71
SNRNP48-202ENST00000496946 RBM10P98175 930 aaKnown RBP4.38□□□□□ -1.71
SNRNP48-202ENST00000496946 POU4F2Q12837 409 aa4.38□□□□□ -1.71
SNRNP48-202ENST00000496946 CC2D2BQ6DHV5 1058 aa4.38□□□□□ -1.71
SNRNP48-202ENST00000496946 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.38□□□□□ -1.71
SNRNP48-202ENST00000496946 TSEN2Q8NCE0 465 aaKnown RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms