RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 EZH2Q15910 746 aaKnown RBP21.53■■□□□ 1.04
LIME1-209ENST00000494776 DDX10Q13206 875 aaKnown RBP21.52■■□□□ 1.04
LIME1-209ENST00000494776 SPG7Q9UQ90 795 aa21.52■■□□□ 1.04
LIME1-209ENST00000494776 IGSF1Q8N6C5 1336 aa21.52■■□□□ 1.03
LIME1-209ENST00000494776 PCDH11XQ9BZA7 1347 aa21.52■■□□□ 1.03
LIME1-209ENST00000494776 PCDH11YQ9BZA8 1340 aa21.52■■□□□ 1.03
LIME1-209ENST00000494776 KCNQ2O43526 872 aa21.51■■□□□ 1.03
LIME1-209ENST00000494776 PTF1AQ7RTS3 328 aa21.51■■□□□ 1.03
LIME1-209ENST00000494776 CAMKK2Q96RR4 588 aa21.51■■□□□ 1.03
LIME1-209ENST00000494776 NCAPD2Q15021 1401 aa21.51■■□□□ 1.03
LIME1-209ENST00000494776 SBF2Q86WG5 1849 aa21.5■■□□□ 1.03
LIME1-209ENST00000494776 IL13P35225 146 aa21.5■■□□□ 1.03
LIME1-209ENST00000494776 SYTL4Q96C24 671 aaPredicted RBP21.5■■□□□ 1.03
LIME1-209ENST00000494776 DIAPH1O60610 1272 aaKnown RBP21.49■■□□□ 1.03
LIME1-209ENST00000494776 PARD3Q8TEW0 1356 aa21.48■■□□□ 1.03
LIME1-209ENST00000494776 CFAP53Q96M91 514 aa21.48■■□□□ 1.03
LIME1-209ENST00000494776 SULT6B1Q6IMI4 303 aa21.47■■□□□ 1.03
LIME1-209ENST00000494776 PLSCR1O15162 318 aa21.46■■□□□ 1.03
LIME1-209ENST00000494776 PRIM1P49642 420 aaKnown RBP21.46■■□□□ 1.03
LIME1-209ENST00000494776 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.46■■□□□ 1.03
LIME1-209ENST00000494776 CYP27B1O15528 508 aa21.45■■□□□ 1.02
LIME1-209ENST00000494776 PPP2R1AP30153 589 aa21.45■■□□□ 1.02
LIME1-209ENST00000494776 AEBP1Q8IUX7 1158 aa21.45■■□□□ 1.02
LIME1-209ENST00000494776 SHANK3Q9BYB0 1731 aa21.45■■□□□ 1.02
LIME1-209ENST00000494776 NHSQ6T4R5 1651 aa21.44■■□□□ 1.02
LIME1-209ENST00000494776 PLEKHO1Q53GL0 409 aaPredicted RBP21.44■■□□□ 1.02
LIME1-209ENST00000494776 KAT6BQ8WYB5 2073 aa21.43■■□□□ 1.02
LIME1-209ENST00000494776 U2SURPO15042 1029 aaKnown RBP21.43■■□□□ 1.02
LIME1-209ENST00000494776 IFNL2Q8IZJ0 200 aa21.43■■□□□ 1.02
LIME1-209ENST00000494776 HMOX1P09601 288 aa21.42■■□□□ 1.02
LIME1-209ENST00000494776 AMOTQ4VCS5 1084 aa21.42■■□□□ 1.02
LIME1-209ENST00000494776 NBPF14Q5TI25 921 aa21.42■■□□□ 1.02
LIME1-209ENST00000494776 PKD1L3Q7Z443 1732 aa21.41■■□□□ 1.02
LIME1-209ENST00000494776 PLEKHG2Q9H7P9 1386 aa21.41■■□□□ 1.02
LIME1-209ENST00000494776 PHKG2P15735 406 aa21.4■■□□□ 1.02
LIME1-209ENST00000494776 KDRP35968 1356 aa21.39■■□□□ 1.02
LIME1-209ENST00000494776 DOT1LQ8TEK3 1739 aa21.39■■□□□ 1.01
LIME1-209ENST00000494776 TXNRD1Q16881 649 aa21.39■■□□□ 1.01
LIME1-209ENST00000494776 ZNF530Q6P9A1 599 aaPredicted RBP21.39■■□□□ 1.01
LIME1-209ENST00000494776 NUDCQ9Y266 331 aa21.39■■□□□ 1.01
LIME1-209ENST00000494776 PSDA5PKW4 1024 aaPredicted RBP21.38■■□□□ 1.01
LIME1-209ENST00000494776 NKX1-1Q15270 411 aaPredicted RBP21.38■■□□□ 1.01
LIME1-209ENST00000494776 C1orf141Q5JVX7 400 aa21.38■■□□□ 1.01
LIME1-209ENST00000494776 HSP90AB1P08238 724 aaKnown RBP21.37■■□□□ 1.01
LIME1-209ENST00000494776 R3HDM1Q15032 1099 aaKnown RBP21.37■■□□□ 1.01
LIME1-209ENST00000494776 RALBP1Q15311 655 aa21.37■■□□□ 1.01
LIME1-209ENST00000494776 MPRIPQ6WCQ1 1025 aa21.37■■□□□ 1.01
LIME1-209ENST00000494776 COL3A1P02461 1466 aaPredicted RBP21.37■■□□□ 1.01
LIME1-209ENST00000494776 BTAF1O14981 1849 aa21.36■■□□□ 1.01
LIME1-209ENST00000494776 RGPD3A6NKT7 1758 aaPredicted RBP21.36■■□□□ 1.01
LIME1-209ENST00000494776 RGPD4Q7Z3J3 1758 aa21.36■■□□□ 1.01
LIME1-209ENST00000494776 ZNF316A6NFI3 1004 aaPredicted RBP21.36■■□□□ 1.01
LIME1-209ENST00000494776 PROM2Q8N271 834 aa21.36■■□□□ 1.01
LIME1-209ENST00000494776 RREB1Q92766 1687 aa21.36■■□□□ 1.01
LIME1-209ENST00000494776 SRCAPQ6ZRS2 3230 aa21.35■■□□□ 1.01
LIME1-209ENST00000494776 NUP188Q5SRE5 1749 aa21.33■■□□□ 1.01
LIME1-209ENST00000494776 TMOD3Q9NYL9 352 aa21.33■■□□□ 1.01
LIME1-209ENST00000494776 U2AF1L5P0DN76 240 aaPredicted RBP21.32■■□□□ 1
LIME1-209ENST00000494776 U2AF1Q01081 240 aaKnown RBP eCLIP21.32■■□□□ 1
LIME1-209ENST00000494776 DCAF5Q96JK2 942 aa21.32■■□□□ 1
LIME1-209ENST00000494776 SLC27A3Q5K4L6 730 aa21.3■■□□□ 1
LIME1-209ENST00000494776 PIGBQ92521 554 aa21.3■■□□□ 1
LIME1-209ENST00000494776 STK32BQ9NY57 414 aa21.3■■□□□ 1
LIME1-209ENST00000494776 ERVV-2B6SEH9 535 aa21.29■■□□□ 1
LIME1-209ENST00000494776 CABP4P57796 275 aa21.29■■□□□ 1
LIME1-209ENST00000494776 AKAP4Q5JQC9 854 aa21.29■■□□□ 1
LIME1-209ENST00000494776 SMARCC1Q92922 1105 aaPredicted RBP21.29■■□□□ 1
LIME1-209ENST00000494776 MTHFSDQ2M296 383 aaKnown RBP21.28■■□□□ 1
LIME1-209ENST00000494776 CCNL1Q9UK58 526 aaPredicted RBP21.28■■□□□ 1
LIME1-209ENST00000494776 TOGARAM1Q9Y4F4 1720 aa21.28■■□□□ 1
LIME1-209ENST00000494776 MYBBP1AQ9BQG0 1328 aaKnown RBP21.28■■□□□ 1
LIME1-209ENST00000494776 PRKAR2BP31323 418 aa21.27■■□□□ 1
LIME1-209ENST00000494776 ANO8Q9HCE9 1232 aaPredicted RBP21.27■■□□□ 1
LIME1-209ENST00000494776 LRRC4BQ9NT99 713 aa21.27■■□□□ 1
LIME1-209ENST00000494776 PALLDQ8WX93 1383 aa21.26■□□□□ 0.99
LIME1-209ENST00000494776 KCNQ4P56696 695 aa21.26■□□□□ 0.99
LIME1-209ENST00000494776 RSPH6AQ9H0K4 717 aa21.26■□□□□ 0.99
LIME1-209ENST00000494776 ITGB4P16144 1822 aa21.25■□□□□ 0.99
LIME1-209ENST00000494776 FCHSD2O94868 740 aa21.25■□□□□ 0.99
LIME1-209ENST00000494776 SLC15A2Q16348 729 aa21.25■□□□□ 0.99
LIME1-209ENST00000494776 GAS2L2Q8NHY3 880 aa21.25■□□□□ 0.99
LIME1-209ENST00000494776 KDM6AO15550 1401 aaPredicted RBP21.24■□□□□ 0.99
LIME1-209ENST00000494776 NEFMP07197 916 aa21.23■□□□□ 0.99
LIME1-209ENST00000494776 HMGB2P26583 209 aaKnown RBP21.23■□□□□ 0.99
LIME1-209ENST00000494776 PRKRIP1Q9H875 184 aaPredicted RBP21.23■□□□□ 0.99
LIME1-209ENST00000494776 ASAP1Q9ULH1 1129 aa21.22■□□□□ 0.99
LIME1-209ENST00000494776 RNMTO43148 476 aaKnown RBP21.21■□□□□ 0.99
LIME1-209ENST00000494776 NFATC2IPQ8NCF5 419 aa21.21■□□□□ 0.99
LIME1-209ENST00000494776 PHACTR3Q96KR7 559 aa21.21■□□□□ 0.99
LIME1-209ENST00000494776 LGR6Q9HBX8 967 aa21.21■□□□□ 0.99
LIME1-209ENST00000494776 LY75O60449 1722 aa21.21■□□□□ 0.99
LIME1-209ENST00000494776 LRP5O75197 1615 aa21.2■□□□□ 0.98
LIME1-209ENST00000494776 GNAT3A8MTJ3 354 aa21.2■□□□□ 0.98
LIME1-209ENST00000494776 ATG3Q9NT62 314 aa21.2■□□□□ 0.98
LIME1-209ENST00000494776 ZNF827Q17R98 1081 aa21.19■□□□□ 0.98
LIME1-209ENST00000494776 PNNQ9H307 717 aaKnown RBP21.19■□□□□ 0.98
LIME1-209ENST00000494776 LOC102724428A0A0B4J2F2 783 aa21.18■□□□□ 0.98
LIME1-209ENST00000494776 SIK1P57059 783 aa21.18■□□□□ 0.98
LIME1-209ENST00000494776 RBM42Q9BTD8 480 aaKnown RBP21.18■□□□□ 0.98
LIME1-209ENST00000494776 SLC52A2Q9HAB3 445 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms