RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 IGSF1Q8N6C5 1336 aa12.06□□□□□ -0.48
NPHP3-209ENST00000493732 DCTN1Q14203 1278 aa12.05□□□□□ -0.48
NPHP3-209ENST00000493732 CRB1P82279 1406 aa12.05□□□□□ -0.48
NPHP3-209ENST00000493732 USP54Q70EL1 1684 aa12.05□□□□□ -0.48
NPHP3-209ENST00000493732 RBM25P49756 843 aaKnown RBP12.05□□□□□ -0.48
NPHP3-209ENST00000493732 MFAP1P55081 439 aaKnown RBP12.05□□□□□ -0.48
NPHP3-209ENST00000493732 NLRP6P59044 892 aa12.05□□□□□ -0.48
NPHP3-209ENST00000493732 CHMP4AQ9BY43 222 aa12.05□□□□□ -0.48
NPHP3-209ENST00000493732 TBC1D2Q9BYX2 928 aa12.04□□□□□ -0.48
NPHP3-209ENST00000493732 DCTPP1Q9H773 170 aa12.04□□□□□ -0.48
NPHP3-209ENST00000493732 RTL1A6NKG5 1358 aa12.04□□□□□ -0.48
NPHP3-209ENST00000493732 CEP170BQ9Y4F5 1589 aaPredicted RBP12.04□□□□□ -0.48
NPHP3-209ENST00000493732 MCM10Q7L590 875 aa12.03□□□□□ -0.48
NPHP3-209ENST00000493732 BCL11AQ9H165 835 aa12.03□□□□□ -0.48
NPHP3-209ENST00000493732 HMMRO75330 724 aa12.03□□□□□ -0.48
NPHP3-209ENST00000493732 CCT4P50991 539 aaKnown RBP12.03□□□□□ -0.48
NPHP3-209ENST00000493732 MTHFSDQ2M296 383 aaKnown RBP12.03□□□□□ -0.48
NPHP3-209ENST00000493732 ANKLE2Q86XL3 938 aa12.03□□□□□ -0.48
NPHP3-209ENST00000493732 HSCBQ8IWL3 235 aa12.03□□□□□ -0.48
NPHP3-209ENST00000493732 ANKRD44Q8N8A2 993 aa12.03□□□□□ -0.48
NPHP3-209ENST00000493732 TSPYL4Q9UJ04 414 aa12.03□□□□□ -0.48
NPHP3-209ENST00000493732 PIK3C2AO00443 1686 aa12.02□□□□□ -0.48
NPHP3-209ENST00000493732 SIRT2Q8IXJ6 389 aa12.02□□□□□ -0.49
NPHP3-209ENST00000493732 SNX21Q969T3 373 aa12.02□□□□□ -0.49
NPHP3-209ENST00000493732 EYA1Q99502 592 aa12.02□□□□□ -0.49
NPHP3-209ENST00000493732 STK31Q9BXU1 1019 aa12.02□□□□□ -0.49
NPHP3-209ENST00000493732 KCNA6P17658 529 aa12.01□□□□□ -0.49
NPHP3-209ENST00000493732 ANTXR1Q9H6X2 564 aa12.01□□□□□ -0.49
NPHP3-209ENST00000493732 GNAT3A8MTJ3 354 aa12.01□□□□□ -0.49
NPHP3-209ENST00000493732 SOX12O15370 315 aa12.01□□□□□ -0.49
NPHP3-209ENST00000493732 FRAT2O75474 233 aaPredicted RBP12.01□□□□□ -0.49
NPHP3-209ENST00000493732 SLC4A2P04920 1241 aa12.01□□□□□ -0.49
NPHP3-209ENST00000493732 HOXC9P31274 260 aa12.01□□□□□ -0.49
NPHP3-209ENST00000493732 C1orf115Q9H7X2 142 aa12.01□□□□□ -0.49
NPHP3-209ENST00000493732 CDC45O75419 566 aa12□□□□□ -0.49
NPHP3-209ENST00000493732 ABTB2Q8N961 1025 aa12□□□□□ -0.49
NPHP3-209ENST00000493732 CHMP5Q9NZZ3 219 aa12□□□□□ -0.49
NPHP3-209ENST00000493732 RGPD8O14715 1765 aaPredicted RBP12□□□□□ -0.49
NPHP3-209ENST00000493732 CCDC30Q5VVM6 783 aa11.99□□□□□ -0.49
NPHP3-209ENST00000493732 PHF8Q9UPP1 1060 aa11.99□□□□□ -0.49
NPHP3-209ENST00000493732 RGS12O14924 1447 aa11.99□□□□□ -0.49
NPHP3-209ENST00000493732 CASC1Q6TDU7 716 aa11.99□□□□□ -0.49
NPHP3-209ENST00000493732 KCNH5Q8NCM2 988 aa11.99□□□□□ -0.49
NPHP3-209ENST00000493732 SLKQ9H2G2 1235 aaPredicted RBP11.99□□□□□ -0.49
NPHP3-209ENST00000493732 CEP85Q6P2H3 762 aa11.98□□□□□ -0.49
NPHP3-209ENST00000493732 ATP10DQ9P241 1426 aa11.98□□□□□ -0.49
NPHP3-209ENST00000493732 MAP3K5Q99683 1374 aa11.98□□□□□ -0.49
NPHP3-209ENST00000493732 CHD2O14647 1828 aaKnown RBP11.97□□□□□ -0.49
NPHP3-209ENST00000493732 ZNF142P52746 1687 aaPredicted RBP11.97□□□□□ -0.49
NPHP3-209ENST00000493732 GNAI3P08754 354 aa11.97□□□□□ -0.49
NPHP3-209ENST00000493732 TAF7Q15545 349 aaPredicted RBP11.97□□□□□ -0.49
NPHP3-209ENST00000493732 PLEKHM2Q8IWE5 1019 aa11.97□□□□□ -0.49
NPHP3-209ENST00000493732 CIZ1Q9ULV3 898 aaPredicted RBP11.97□□□□□ -0.49
NPHP3-209ENST00000493732 LRRC37A3O60309 1634 aa11.97□□□□□ -0.49
NPHP3-209ENST00000493732 KRT24Q2M2I5 525 aa11.96□□□□□ -0.49
NPHP3-209ENST00000493732 TBC1D9Q6ZT07 1266 aa11.96□□□□□ -0.49
NPHP3-209ENST00000493732 IP6K1Q92551 441 aa11.96□□□□□ -0.49
NPHP3-209ENST00000493732 CACNA1FO60840 1977 aa11.96□□□□□ -0.49
NPHP3-209ENST00000493732 MSH6P52701 1360 aa11.96□□□□□ -0.5
NPHP3-209ENST00000493732 FOXO3O43524 673 aa11.96□□□□□ -0.5
NPHP3-209ENST00000493732 TRHP20396 242 aaPredicted RBP11.96□□□□□ -0.5
NPHP3-209ENST00000493732 TTC22Q5TAA0 569 aa11.96□□□□□ -0.5
NPHP3-209ENST00000493732 GNAI2P04899 355 aa11.95□□□□□ -0.5
NPHP3-209ENST00000493732 ADGRL3Q9HAR2 1447 aa11.95□□□□□ -0.5
NPHP3-209ENST00000493732 HOXB7P09629 217 aa11.94□□□□□ -0.5
NPHP3-209ENST00000493732 PTMSP20962 102 aa11.94□□□□□ -0.5
NPHP3-209ENST00000493732 NCOA3Q9Y6Q9 1424 aa11.94□□□□□ -0.5
NPHP3-209ENST00000493732 MARF1Q9Y4F3 1742 aaKnown RBP11.94□□□□□ -0.5
NPHP3-209ENST00000493732 PXDNLA1KZ92 1463 aa11.94□□□□□ -0.5
NPHP3-209ENST00000493732 PSME1Q06323 249 aa11.94□□□□□ -0.5
NPHP3-209ENST00000493732 NWD1Q149M9 1564 aa11.94□□□□□ -0.5
NPHP3-209ENST00000493732 MEIS3Q99687 375 aa11.94□□□□□ -0.5
NPHP3-209ENST00000493732 SETD1BQ9UPS6 1966 aaKnown RBP11.93□□□□□ -0.5
NPHP3-209ENST00000493732 HSP90AB1P08238 724 aaKnown RBP11.93□□□□□ -0.5
NPHP3-209ENST00000493732 FLIIQ13045 1269 aa11.93□□□□□ -0.5
NPHP3-209ENST00000493732 SLC4A10Q6U841 1118 aa11.93□□□□□ -0.5
NPHP3-209ENST00000493732 C14orf37Q86TY3 774 aa11.93□□□□□ -0.5
NPHP3-209ENST00000493732 OSBPL3Q9H4L5 887 aa11.93□□□□□ -0.5
NPHP3-209ENST00000493732 MIS18AQ9NYP9 233 aa11.93□□□□□ -0.5
NPHP3-209ENST00000493732 DDX11L8A8MPP1 907 aa11.92□□□□□ -0.5
NPHP3-209ENST00000493732 FKBP5Q13451 457 aaPredicted RBP11.92□□□□□ -0.5
NPHP3-209ENST00000493732 PHRF1Q9P1Y6 1649 aaKnown RBP11.92□□□□□ -0.5
NPHP3-209ENST00000493732 REC8O95072 547 aa11.92□□□□□ -0.5
NPHP3-209ENST00000493732 MCM4P33991 863 aa11.92□□□□□ -0.5
NPHP3-209ENST00000493732 RABEP1Q15276 862 aa11.92□□□□□ -0.5
NPHP3-209ENST00000493732 AMOTQ4VCS5 1084 aa11.92□□□□□ -0.5
NPHP3-209ENST00000493732 IL27Q8NEV9 243 aa11.92□□□□□ -0.5
NPHP3-209ENST00000493732 IL17REQ8NFR9 667 aa11.92□□□□□ -0.5
NPHP3-209ENST00000493732 GSPT1P15170 499 aaKnown RBP11.91□□□□□ -0.5
NPHP3-209ENST00000493732 NUTM2GQ5VZR2 741 aa11.91□□□□□ -0.5
NPHP3-209ENST00000493732 CEMIPQ8WUJ3 1361 aa11.91□□□□□ -0.5
NPHP3-209ENST00000493732 K7ELQ4 463 aaPredicted RBP11.9□□□□□ -0.5
NPHP3-209ENST00000493732 HSP90AA1P07900 732 aaKnown RBP11.9□□□□□ -0.5
NPHP3-209ENST00000493732 ESCO1Q5FWF5 840 aa11.9□□□□□ -0.5
NPHP3-209ENST00000493732 L1TD1Q5T7N2 865 aaKnown RBP11.9□□□□□ -0.5
NPHP3-209ENST00000493732 G2E3Q7L622 706 aa11.9□□□□□ -0.5
NPHP3-209ENST00000493732 SRCIN1Q9C0H9 1055 aa11.9□□□□□ -0.5
NPHP3-209ENST00000493732 NFAT5O94916 1531 aa11.9□□□□□ -0.5
NPHP3-209ENST00000493732 ATP8B2P98198 1209 aa11.9□□□□□ -0.51
NPHP3-209ENST00000493732 PLEKHO1Q53GL0 409 aaPredicted RBP11.9□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms